ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags6l05 |
|---|---|
| Clone Library Name | barley_pub |
>CLCC_ARATH (Q96282) Chloride channel protein CLC-c (AtCLC-c)| Length = 779 Score = 200 bits (509), Expect(2) = 1e-53 Identities = 105/159 (66%), Positives = 119/159 (74%) Frame = +1 Query: 67 HAEPYMRHLVASDVVSGPLISFSGVEKVGNIVHALRITGHNGFPVVDEPPVSEAPEXXXX 246 HAEPYMR+LVA DVVSG LISFS VEKVG I AL++T HNGFPV+DEPP +EA E Sbjct: 589 HAEPYMRNLVAKDVVSGALISFSRVEKVGVIWQALKMTRHNGFPVIDEPPFTEASELCGI 648 Query: 247 XXXXXXXXXXNGRNFMKEKVKTSGSFVLRRFGAFDFAKPGSGKGMKIEDLDFTEEEMEMY 426 G+ F K++ T GS +LR A DF K G GKG+KIEDLD +EEEMEMY Sbjct: 649 ALRSHLLVLLQGKKFSKQRT-TFGSQILRSCKARDFGKAGLGKGLKIEDLDLSEEEMEMY 707 Query: 427 VDLHPITNTSPYTVVETMSLAKAAVLFRALGLRHLLVVP 543 VDLHPITNTSPYTV+ET+SLAKAA+LFR LGLRHL VVP Sbjct: 708 VDLHPITNTSPYTVLETLSLAKAAILFRQLGLRHLCVVP 746 Score = 28.9 bits (63), Expect(2) = 1e-53 Identities = 12/19 (63%), Positives = 13/19 (68%) Frame = +3 Query: 3 CFNXGCMIXIVVMKGLPFM 59 CFN G IV MKGLP+M Sbjct: 568 CFNRGVYDQIVTMKGLPYM 586
>CLCG_ARATH (P60300) Putative chloride channel-like protein CLC-g| Length = 763 Score = 173 bits (438), Expect = 3e-43 Identities = 87/160 (54%), Positives = 109/160 (68%) Frame = +1 Query: 64 AHAEPYMRHLVASDVVSGPLISFSGVEKVGNIVHALRITGHNGFPVVDEPPVSEAPEXXX 243 +HAEPYMR L+ DVV+GPL F+G+EKV IVH L+ T HNGFPVVD PP++ AP Sbjct: 560 SHAEPYMRQLLVGDVVTGPLQVFNGIEKVETIVHVLKTTNHNGFPVVDGPPLAAAPVLHG 619 Query: 244 XXXXXXXXXXXNGRNFMKEKVKTSGSFVLRRFGAFDFAKPGSGKGMKIEDLDFTEEEMEM 423 R FM V + L +F A +FAK GSG+ KIED++ +EEE+ M Sbjct: 620 LILRAHILTLLKKRVFMPSPVACDSN-TLSQFKAEEFAKKGSGRSDKIEDVELSEEELNM 678 Query: 424 YVDLHPITNTSPYTVVETMSLAKAAVLFRALGLRHLLVVP 543 Y+DLHP +N SPYTVVETMSLAKA +LFR +G+RHLLV+P Sbjct: 679 YLDLHPFSNASPYTVVETMSLAKALILFREVGIRHLLVIP 718
>CLCA_ARATH (P92941) Chloride channel protein CLC-a (AtCLC-a)| Length = 775 Score = 124 bits (311), Expect = 2e-28 Identities = 69/162 (42%), Positives = 97/162 (59%), Gaps = 2/162 (1%) Frame = +1 Query: 64 AHAEPYMRHLVASDV--VSGPLISFSGVEKVGNIVHALRITGHNGFPVVDEPPVSEAPEX 237 A+ EP+MR+L ++ P+++ +GVEKV NIV LR T HN FPV+D + E Sbjct: 578 ANPEPWMRNLTVGELNDAKPPVVTLNGVEKVANIVDVLRNTTHNAFPVLDGADQNTGTEL 637 Query: 238 XXXXXXXXXXXXXNGRNFMKEKVKTSGSFVLRRFGAFDFAKPGSGKGMKIEDLDFTEEEM 417 R F+ EK +T V +F + A+ + +D+ T EM Sbjct: 638 HGLILRAHLVKVLKKRWFLNEKRRTEEWEVREKFTPVELAE----REDNFDDVAITSSEM 693 Query: 418 EMYVDLHPITNTSPYTVVETMSLAKAAVLFRALGLRHLLVVP 543 ++YVDLHP+TNT+PYTVV++MS+AKA VLFR++GLRHLLVVP Sbjct: 694 QLYVDLHPLTNTTPYTVVQSMSVAKALVLFRSVGLRHLLVVP 735
>CLCB_ARATH (P92942) Chloride channel protein CLC-b (AtCLC-b)| Length = 780 Score = 121 bits (304), Expect = 1e-27 Identities = 72/168 (42%), Positives = 97/168 (57%), Gaps = 8/168 (4%) Frame = +1 Query: 64 AHAEPYMRHLVASDV--VSGPLISFSGVEKVGNIVHALRITGHNGFPVVDEPPVSE---- 225 A+ EP+MR+L ++ P+++ GVEKV NIV L+ T HN FPV+DE V + Sbjct: 577 ANPEPWMRNLTVGELGDAKPPVVTLQGVEKVSNIVDVLKNTTHNAFPVLDEAEVPQVGLA 636 Query: 226 --APEXXXXXXXXXXXXXXNGRNFMKEKVKTSGSFVLRRFGAFDFAKPGSGKGMKIEDLD 399 A E R F+ EK +T V +F + A+ + +D+ Sbjct: 637 TGATELHGLILRAHLVKVLKKRWFLTEKRRTEEWEVREKFPWDELAE----REDNFDDVA 692 Query: 400 FTEEEMEMYVDLHPITNTSPYTVVETMSLAKAAVLFRALGLRHLLVVP 543 T EMEMYVDLHP+TNT+PYTV+E MS+AKA VLFR +GLRHLL+VP Sbjct: 693 ITSAEMEMYVDLHPLTNTTPYTVMENMSVAKALVLFRQVGLRHLLIVP 740
>CLCD_ARATH (P92943) Chloride channel protein CLC-d (AtCLC-d)| Length = 792 Score = 97.4 bits (241), Expect = 2e-20 Identities = 59/156 (37%), Positives = 78/156 (50%), Gaps = 1/156 (0%) Frame = +1 Query: 79 YMRHLVASDVV-SGPLISFSGVEKVGNIVHALRITGHNGFPVVDEPPVSEAPEXXXXXXX 255 +MR ++A + S +IS V +V ++ L HNGFPV+D E Sbjct: 581 HMRQMIAKEACQSQKVISLPRVIRVADVASILGSNKHNGFPVIDHTRSGETLVIGLVLRS 640 Query: 256 XXXXXXXNGRNFMKEKVKTSGSFVLRRFGAFDFAKPGSGKGMKIEDLDFTEEEMEMYVDL 435 + +F + S R +FAKP S KG+ IED+ T +++EMY+DL Sbjct: 641 HLLVLLQSKVDFQHSPLPCDPSARNIRHSFSEFAKPVSSKGLCIEDIHLTSDDLEMYIDL 700 Query: 436 HPITNTSPYTVVETMSLAKAAVLFRALGLRHLLVVP 543 P N SPY V E MSL K LFR LGLRHL VVP Sbjct: 701 APFLNPSPYVVPEDMSLTKVYNLFRQLGLRHLFVVP 736
>CLCN7_RAT (P51799) Chloride channel protein 7 (ClC-7)| Length = 803 Score = 69.3 bits (168), Expect = 6e-12 Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 2/152 (1%) Frame = +1 Query: 91 LVASDVVSGPLISFSGVEKVGNIVHALRITG--HNGFPVVDEPPVSEAPEXXXXXXXXXX 264 L A +V+S P+ EKVG IV L T HNGFPVV++ ++ Sbjct: 623 LTAREVMSTPVTCLRRREKVGIIVDVLSDTASNHNGFPVVEDVGDTQPARLQGLILRSQL 682 Query: 265 XXXXNGRNFMKEKVKTSGSFVLRRFGAFDFAKPGSGKGMKIEDLDFTEEEMEMYVDLHPI 444 + F++ +++ V RR DF + + I+ + +++E E +DL Sbjct: 683 IVLLKHKVFVE---RSNMGLVQRRLRLKDF-RDAYPRFPPIQSIHVSQDERECTMDLSEF 738 Query: 445 TNTSPYTVVETMSLAKAAVLFRALGLRHLLVV 540 N SPYTV + SL + LFRALGLRHL+VV Sbjct: 739 MNPSPYTVPQEASLPRVFKLFRALGLRHLVVV 770
>CLCN7_MOUSE (O70496) Chloride channel protein 7 (ClC-7)| Length = 803 Score = 69.3 bits (168), Expect = 6e-12 Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 2/152 (1%) Frame = +1 Query: 91 LVASDVVSGPLISFSGVEKVGNIVHALRITG--HNGFPVVDEPPVSEAPEXXXXXXXXXX 264 L A +V+S P+ EKVG IV L T HNGFPVV++ ++ Sbjct: 623 LTAREVMSTPVTCLRRREKVGIIVDVLSDTASNHNGFPVVEDVGDTQPARLQGLILRSQL 682 Query: 265 XXXXNGRNFMKEKVKTSGSFVLRRFGAFDFAKPGSGKGMKIEDLDFTEEEMEMYVDLHPI 444 + F++ +++ V RR DF + + I+ + +++E E +DL Sbjct: 683 IVLLKHKVFVE---RSNMGLVQRRLRLKDF-RDAYPRFPPIQSIHVSQDERECTMDLSEF 738 Query: 445 TNTSPYTVVETMSLAKAAVLFRALGLRHLLVV 540 N SPYTV + SL + LFRALGLRHL+VV Sbjct: 739 MNPSPYTVPQEASLPRVFKLFRALGLRHLVVV 770
>CLCN7_HUMAN (P51798) Chloride channel protein 7 (ClC-7)| Length = 805 Score = 68.9 bits (167), Expect = 8e-12 Identities = 51/152 (33%), Positives = 74/152 (48%), Gaps = 2/152 (1%) Frame = +1 Query: 91 LVASDVVSGPLISFSGVEKVGNIVHALRITG--HNGFPVVDEPPVSEAPEXXXXXXXXXX 264 L A +V+S P+ EKVG IV L T HNGFPVV+ ++ Sbjct: 625 LTAREVMSTPVTCLRRREKVGVIVDVLSDTASNHNGFPVVEHADDTQPARLQGLILRSQL 684 Query: 265 XXXXNGRNFMKEKVKTSGSFVLRRFGAFDFAKPGSGKGMKIEDLDFTEEEMEMYVDLHPI 444 + F++ +++ V RR DF + + I+ + +++E E +DL Sbjct: 685 IVLLKHKVFVE---RSNLGLVQRRLRLKDF-RDAYPRFPPIQSIHVSQDERECTMDLSEF 740 Query: 445 TNTSPYTVVETMSLAKAAVLFRALGLRHLLVV 540 N SPYTV + SL + LFRALGLRHL+VV Sbjct: 741 MNPSPYTVPQEASLPRVFKLFRALGLRHLVVV 772
>CLCN6_RABIT (Q9TT16) Chloride channel protein 6 (ClC-6)| Length = 869 Score = 45.1 bits (105), Expect = 1e-04 Identities = 24/52 (46%), Positives = 30/52 (57%) Frame = +1 Query: 385 IEDLDFTEEEMEMYVDLHPITNTSPYTVVETMSLAKAAVLFRALGLRHLLVV 540 I DLD T M VD+ P N SP+TV +++ LFR +GLRHL VV Sbjct: 787 IHDLDLTLLNPRMIVDVTPYMNPSPFTVSPNTHVSQVFNLFRTMGLRHLPVV 838
>CLCN6_HUMAN (P51797) Chloride channel protein 6 (ClC-6)| Length = 869 Score = 45.1 bits (105), Expect = 1e-04 Identities = 24/52 (46%), Positives = 30/52 (57%) Frame = +1 Query: 385 IEDLDFTEEEMEMYVDLHPITNTSPYTVVETMSLAKAAVLFRALGLRHLLVV 540 I DLD T M VD+ P N SP+TV +++ LFR +GLRHL VV Sbjct: 787 IHDLDLTLLNPRMIVDVTPYMNPSPFTVSPNTHVSQVFNLFRTMGLRHLPVV 838
>CLCN6_MOUSE (O35454) Chloride channel protein 6 (ClC-6)| Length = 870 Score = 45.1 bits (105), Expect = 1e-04 Identities = 24/52 (46%), Positives = 30/52 (57%) Frame = +1 Query: 385 IEDLDFTEEEMEMYVDLHPITNTSPYTVVETMSLAKAAVLFRALGLRHLLVV 540 I DLD T M VD+ P N SP+TV +++ LFR +GLRHL VV Sbjct: 788 IHDLDLTLLNPRMIVDVTPYMNPSPFTVSPNTHVSQVFNLFRTMGLRHLPVV 839
>CLCN4_RAT (P51794) Chloride channel protein 4 (ClC-4)| Length = 747 Score = 32.3 bits (72), Expect = 0.88 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 6/52 (11%) Frame = +1 Query: 400 FTEEEMEMYVDL-HP-----ITNTSPYTVVETMSLAKAAVLFRALGLRHLLV 537 FTEE E+ + HP I N SP+TV + + +FR LGLR LV Sbjct: 663 FTEEPPELPANSPHPLKLRRILNLSPFTVTDHTPMETVVDIFRKLGLRQCLV 714
>CLCN4_HUMAN (P51793) Chloride channel protein 4 (ClC-4)| Length = 760 Score = 32.3 bits (72), Expect = 0.88 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 6/52 (11%) Frame = +1 Query: 400 FTEEEMEMYVDL-HP-----ITNTSPYTVVETMSLAKAAVLFRALGLRHLLV 537 FTEE E+ + HP I N SP+TV + + +FR LGLR LV Sbjct: 676 FTEEPPELPANSPHPLKLRRILNLSPFTVTDHTPMETVVDIFRKLGLRQCLV 727
>CLCN4_MOUSE (Q61418) Chloride channel protein 4 (ClC-4)| Length = 747 Score = 32.0 bits (71), Expect = 1.1 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 6/52 (11%) Frame = +1 Query: 400 FTEEEMEMYVDL-HP-----ITNTSPYTVVETMSLAKAAVLFRALGLRHLLV 537 FTEE E+ + HP I N SP+TV + + +FR LGLR LV Sbjct: 663 FTEEPPELPANSPHPLKLRRIFNLSPFTVTDHTPMETVVDIFRKLGLRQCLV 714
>Y188_METJA (Q57647) Hypothetical protein MJ0188| Length = 265 Score = 29.3 bits (64), Expect = 7.5 Identities = 12/36 (33%), Positives = 23/36 (63%) Frame = +1 Query: 100 SDVVSGPLISFSGVEKVGNIVHALRITGHNGFPVVD 207 S+ ++ +++ S V +++ L+ TGHN FPVV+ Sbjct: 6 SEYMTKKVVTVSKDNTVKDVIKLLKETGHNSFPVVE 41
>URED_BORPE (P0A4R4) Urease accessory protein ureD| Length = 284 Score = 28.9 bits (63), Expect = 9.7 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = +3 Query: 144 EGGQHCSCVKDHGPQRVSSGR*AACIRSSGAGWARA*ITSVGSSEW 281 EG Q C H P ++ G A IR AG ARA +T+ G++ W Sbjct: 44 EGPQVCHVAILHPPSGIAGGD-ALEIRVDVAGGARAALTTPGATRW 88
>URED_BORPA (P0A4R6) Urease accessory protein ureD| Length = 284 Score = 28.9 bits (63), Expect = 9.7 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = +3 Query: 144 EGGQHCSCVKDHGPQRVSSGR*AACIRSSGAGWARA*ITSVGSSEW 281 EG Q C H P ++ G A IR AG ARA +T+ G++ W Sbjct: 44 EGPQVCHVAILHPPSGIAGGD-ALEIRVDVAGGARAALTTPGATRW 88
>URED_BORBR (P0A4R5) Urease accessory protein ureD| Length = 284 Score = 28.9 bits (63), Expect = 9.7 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = +3 Query: 144 EGGQHCSCVKDHGPQRVSSGR*AACIRSSGAGWARA*ITSVGSSEW 281 EG Q C H P ++ G A IR AG ARA +T+ G++ W Sbjct: 44 EGPQVCHVAILHPPSGIAGGD-ALEIRVDVAGGARAALTTPGATRW 88 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,146,277 Number of Sequences: 219361 Number of extensions: 1695147 Number of successful extensions: 3861 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3753 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3851 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4315578075 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
