ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags6k24 |
|---|---|
| Clone Library Name | barley_pub |
>ZFNL2_ORYSA (Q5JLB5) Zinc finger CCCH type domain-containing protein ZFN-like 2| Length = 439 Score = 58.5 bits (140), Expect = 9e-09 Identities = 21/30 (70%), Positives = 25/30 (83%) Frame = +2 Query: 230 FPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 +P+R EPDCTYYL+ G CRFGM C+FNHP Sbjct: 77 YPERSGEPDCTYYLRTGLCRFGMSCRFNHP 106 Score = 53.1 bits (126), Expect = 4e-07 Identities = 19/39 (48%), Positives = 28/39 (71%) Frame = +2 Query: 203 VETADSRPRFPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 + +A + +P+R +P+C YYLK GTC+FG CKF+HP Sbjct: 113 IASARMKGEYPERMGQPECQYYLKTGTCKFGPTCKFHHP 151 Score = 48.9 bits (115), Expect = 7e-06 Identities = 17/30 (56%), Positives = 23/30 (76%) Frame = +2 Query: 230 FPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 FP+R +P+C YY+K G C+FG CKF+HP Sbjct: 329 FPERPDQPECQYYMKTGDCKFGAVCKFHHP 358 Score = 45.4 bits (106), Expect = 8e-05 Identities = 16/30 (53%), Positives = 22/30 (73%) Frame = +2 Query: 230 FPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 +P R +E +C YYLK G C++G CKF+HP Sbjct: 168 YPLRPSEKECAYYLKTGQCKYGNTCKFHHP 197 Score = 40.0 bits (92), Expect = 0.003 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = +2 Query: 233 PQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 P R E C +Y ++G C+FG CKF+HP Sbjct: 376 PLRPGEELCKFYSRYGICKFGANCKFDHP 404
>ZFN1_ARATH (Q8GXX7) Zinc finger CCCH type domain-containing protein ZFN1| Length = 397 Score = 56.6 bits (135), Expect = 4e-08 Identities = 21/39 (53%), Positives = 29/39 (74%) Frame = +2 Query: 203 VETADSRPRFPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 + TA R +P+R +P+C YYLK GTC+FG+ CKF+HP Sbjct: 73 IATARMRGEYPERIGQPECEYYLKTGTCKFGVTCKFHHP 111 Score = 53.1 bits (126), Expect = 4e-07 Identities = 18/30 (60%), Positives = 24/30 (80%) Frame = +2 Query: 230 FPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 +P+R EPDC+YY++ G CRFG C+FNHP Sbjct: 37 YPERPGEPDCSYYIRTGLCRFGSTCRFNHP 66 Score = 48.9 bits (115), Expect = 7e-06 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 6/63 (9%) Frame = +2 Query: 149 IAGSDETTGEITG---GKVQPVETADSRPR---FPQRHAEPDCTYYLKFGTCRFGMKCKF 310 I ++ G +G G P+ + PR FP+R +P+C +Y+K G C+FG CKF Sbjct: 238 IESGSQSQGSFSGYNPGSSVPLGGYYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKF 297 Query: 311 NHP 319 +HP Sbjct: 298 HHP 300 Score = 45.4 bits (106), Expect = 8e-05 Identities = 17/30 (56%), Positives = 21/30 (70%) Frame = +2 Query: 230 FPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 +P R E DC Y+L+ G C+FG CKFNHP Sbjct: 128 YPLRSNEVDCAYFLRTGHCKFGGTCKFNHP 157 Score = 45.1 bits (105), Expect = 1e-04 Identities = 16/31 (51%), Positives = 21/31 (67%) Frame = +2 Query: 233 PQRHAEPDCTYYLKFGTCRFGMKCKFNHPAR 325 P R EP C +Y ++G C+FG CKF+HP R Sbjct: 318 PLRPGEPLCVFYTRYGICKFGPSCKFDHPMR 348
>ZFN3_ARATH (Q8L7N8) Zinc finger CCCH type domain-containing protein ZFN3| Length = 375 Score = 56.6 bits (135), Expect = 4e-08 Identities = 19/30 (63%), Positives = 24/30 (80%) Frame = +2 Query: 230 FPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 +P+RH EPDC YY++ G CRFG C+FNHP Sbjct: 39 YPERHGEPDCAYYIRTGLCRFGSTCRFNHP 68 Score = 53.5 bits (127), Expect = 3e-07 Identities = 19/39 (48%), Positives = 29/39 (74%) Frame = +2 Query: 203 VETADSRPRFPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 + TA + +P+R +P+C +YLK GTC+FG+ CKF+HP Sbjct: 75 IATARIKGEYPERIGQPECEFYLKTGTCKFGVTCKFHHP 113 Score = 48.1 bits (113), Expect = 1e-05 Identities = 16/30 (53%), Positives = 23/30 (76%) Frame = +2 Query: 230 FPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 FP+R +P+C +Y+K G C+FG CKF+HP Sbjct: 240 FPERPGQPECQFYMKTGDCKFGTVCKFHHP 269 Score = 47.0 bits (110), Expect = 3e-05 Identities = 17/30 (56%), Positives = 22/30 (73%) Frame = +2 Query: 230 FPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 +P R E DC+Y+L+ G C+FG CKFNHP Sbjct: 130 YPLRPNEDDCSYFLRIGQCKFGGTCKFNHP 159 Score = 45.1 bits (105), Expect = 1e-04 Identities = 18/42 (42%), Positives = 24/42 (57%) Frame = +2 Query: 200 PVETADSRPRFPQRHAEPDCTYYLKFGTCRFGMKCKFNHPAR 325 P + S P R EP C +Y ++G C+FG CKF+HP R Sbjct: 276 PPDCVLSSVGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMR 317
>ZFNL_PEA (Q9SWF9) Zinc finger CCCH type domain-containing protein ZFN-like| Length = 417 Score = 54.7 bits (130), Expect = 1e-07 Identities = 20/39 (51%), Positives = 28/39 (71%) Frame = +2 Query: 203 VETADSRPRFPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 + TA + FP+R +P+C YYLK GTC+FG C+F+HP Sbjct: 63 IATARMKGEFPERLGQPECQYYLKTGTCKFGATCRFHHP 101 Score = 54.3 bits (129), Expect = 2e-07 Identities = 21/38 (55%), Positives = 28/38 (73%) Frame = +2 Query: 206 ETADSRPRFPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 ET +S P +P+ EPDC+YY++ G CRFG C+FNHP Sbjct: 20 ETMESGP-YPEHPGEPDCSYYIRTGLCRFGATCRFNHP 56 Score = 46.2 bits (108), Expect = 5e-05 Identities = 15/30 (50%), Positives = 23/30 (76%) Frame = +2 Query: 230 FPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 FP+R +P+C +Y+K G C+FG C+F+HP Sbjct: 275 FPERPDQPECQFYMKTGDCKFGAVCRFHHP 304 Score = 43.1 bits (100), Expect = 4e-04 Identities = 15/29 (51%), Positives = 20/29 (68%) Frame = +2 Query: 233 PQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 P R EP C +Y ++G C+FG CKF+HP Sbjct: 322 PLRPGEPLCVFYSRYGICKFGPSCKFDHP 350 Score = 39.7 bits (91), Expect = 0.004 Identities = 15/30 (50%), Positives = 20/30 (66%) Frame = +2 Query: 230 FPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 +P R E + YYL+ G C+FG CKF+HP Sbjct: 118 YPLRPNESERAYYLRTGQCKFGNTCKFHHP 147
>ZFNL3_ORYSA (Q5NAV3) Zinc finger CCCH type domain-containing protein ZFN-like 3| Length = 466 Score = 53.9 bits (128), Expect = 2e-07 Identities = 19/40 (47%), Positives = 27/40 (67%) Frame = +2 Query: 200 PVETADSRPRFPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 P ++ P FP R +P+C YYLK G+C+FG CK++HP Sbjct: 286 PSSSSKQEPAFPARPGQPECQYYLKTGSCKFGSACKYHHP 325 Score = 49.7 bits (117), Expect = 4e-06 Identities = 23/44 (52%), Positives = 27/44 (61%) Frame = +2 Query: 188 GKVQPVETADSRPRFPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 G VQ V S +P R E DCTYY+K G C+FG CKF+HP Sbjct: 130 GSVQAVMLNSSG--YPLRSGEKDCTYYVKTGHCKFGSTCKFHHP 171 Score = 48.1 bits (113), Expect = 1e-05 Identities = 16/30 (53%), Positives = 23/30 (76%) Frame = +2 Query: 230 FPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 +P+R +P C YY+K GTC+FG CK++HP Sbjct: 98 YPERPGQPVCEYYMKNGTCKFGSNCKYDHP 127 Score = 46.6 bits (109), Expect = 4e-05 Identities = 16/31 (51%), Positives = 21/31 (67%) Frame = +2 Query: 227 RFPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 R P+R E DC YYL+ G C +G C++NHP Sbjct: 47 RLPERPGEADCVYYLRTGACGYGENCRYNHP 77 Score = 38.5 bits (88), Expect = 0.010 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = +2 Query: 233 PQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 P R C YY + G C+FG CKF+HP Sbjct: 343 PLRPGSQPCAYYTQHGFCKFGPTCKFDHP 371
>ZFNL1_ARATH (Q84W91) Zinc finger CCCH type domain-containing protein ZFN-like 1| Length = 468 Score = 53.5 bits (127), Expect = 3e-07 Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Frame = +2 Query: 146 GIAGSDETTGEITG---GKVQPVETADSRPRFPQRHAEPDCTYYLKFGTCRFGMKCKFNH 316 G+ TT + G P FP+R EP+C YYLK G C+FG CKF+H Sbjct: 255 GVTQLTSTTPSLPGVYPSLSSPTGVIQKEQAFPERPGEPECQYYLKTGDCKFGTSCKFHH 314 Query: 317 P 319 P Sbjct: 315 P 315 Score = 52.0 bits (123), Expect = 9e-07 Identities = 19/37 (51%), Positives = 26/37 (70%) Frame = +2 Query: 209 TADSRPRFPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 T + ++P+R EP C +YLK GTC+FG CKF+HP Sbjct: 80 TVRATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHP 116 Score = 47.0 bits (110), Expect = 3e-05 Identities = 16/30 (53%), Positives = 23/30 (76%) Frame = +2 Query: 230 FPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 +P R + +C+YYLK G C+FG+ CKF+HP Sbjct: 133 YPVREGDNECSYYLKTGQCKFGITCKFHHP 162 Score = 46.6 bits (109), Expect = 4e-05 Identities = 14/30 (46%), Positives = 22/30 (73%) Frame = +2 Query: 230 FPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 +P+R PDC YY++ G C +G +C++NHP Sbjct: 42 YPERPGAPDCAYYMRTGVCGYGNRCRYNHP 71 Score = 38.1 bits (87), Expect = 0.013 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = +2 Query: 233 PQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 P R CT+Y++ G C+FG CKF+HP Sbjct: 333 PLRPGVQRCTFYVQNGFCKFGSTCKFDHP 361
>ZFNL3_ARATH (Q6NPN3) Zinc finger CCCH type domain-containing protein ZFN-like 3| Length = 465 Score = 51.2 bits (121), Expect = 1e-06 Identities = 18/30 (60%), Positives = 23/30 (76%) Frame = +2 Query: 230 FPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 FP+R EPDC YYL+ G C +G +C+FNHP Sbjct: 48 FPERPDEPDCIYYLRTGVCGYGSRCRFNHP 77 Score = 47.4 bits (111), Expect = 2e-05 Identities = 15/30 (50%), Positives = 23/30 (76%) Frame = +2 Query: 230 FPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 FPQR +P+C Y+++ G C+FG C+F+HP Sbjct: 297 FPQRPEQPECQYFMRTGDCKFGTSCRFHHP 326 Score = 45.1 bits (105), Expect = 1e-04 Identities = 14/30 (46%), Positives = 23/30 (76%) Frame = +2 Query: 230 FPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 FP+R +P C ++++ GTC+FG CK++HP Sbjct: 94 FPERMGQPVCQHFMRTGTCKFGASCKYHHP 123 Score = 42.4 bits (98), Expect = 7e-04 Identities = 13/30 (43%), Positives = 22/30 (73%) Frame = +2 Query: 230 FPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 FP R E +C+Y+++ G C+FG C+++HP Sbjct: 142 FPLRPGEKECSYFMRTGQCKFGSTCRYHHP 171 Score = 33.9 bits (76), Expect = 0.24 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +2 Query: 233 PQRHAEPDCTYYLKFGTCRFGMKCKFNH 316 P R CT++ + G C+FG CKF+H Sbjct: 343 PLRPGAVPCTHFAQHGICKFGPACKFDH 370
>ZFNL2_ARATH (Q9SQU4) Zinc finger CCCH type domain-containing protein ZFN-like 2| Length = 437 Score = 51.2 bits (121), Expect = 1e-06 Identities = 22/45 (48%), Positives = 29/45 (64%) Frame = +2 Query: 185 GGKVQPVETADSRPRFPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 GG V PV S +P R E +C+YYL+ G C+FG+ C+FNHP Sbjct: 107 GGSVAPVSL--SYLGYPLRPGEKECSYYLRTGQCKFGLTCRFNHP 149 Score = 50.1 bits (118), Expect = 3e-06 Identities = 17/30 (56%), Positives = 23/30 (76%) Frame = +2 Query: 230 FPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 +P+R EPDC YYL+ G C +G +C+FNHP Sbjct: 26 YPERPDEPDCIYYLRTGVCGYGSRCRFNHP 55 Score = 48.1 bits (113), Expect = 1e-05 Identities = 18/45 (40%), Positives = 31/45 (68%), Gaps = 1/45 (2%) Frame = +2 Query: 188 GKVQPVETADSRPR-FPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 G Q V +++S + FPQR +P+C Y+++ G C+FG C+++HP Sbjct: 264 GTYQSVPSSNSTSKEFPQRPDQPECQYFMRTGDCKFGSSCRYHHP 308 Score = 42.0 bits (97), Expect = 9e-04 Identities = 13/29 (44%), Positives = 21/29 (72%) Frame = +2 Query: 233 PQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 P+R P C ++++ GTC+FG CK++HP Sbjct: 73 PERMGHPVCQHFMRTGTCKFGASCKYHHP 101 Score = 34.3 bits (77), Expect = 0.19 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +2 Query: 233 PQRHAEPDCTYYLKFGTCRFGMKCKFNH 316 P R CT++ + G C+FG CKF+H Sbjct: 326 PLRPGVAQCTHFAQHGICKFGPACKFDH 353
>ZFNL5_ARATH (Q5RJC5) Zinc finger CCCH type domain-containing protein ZFN-like 5| Length = 435 Score = 50.4 bits (119), Expect = 3e-06 Identities = 18/30 (60%), Positives = 24/30 (80%) Frame = +2 Query: 230 FPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 FP+R +P+CTYYLK G C+F KCK++HP Sbjct: 331 FPERPDQPECTYYLKTGDCKFKYKCKYHHP 360 Score = 49.3 bits (116), Expect = 6e-06 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 4/61 (6%) Frame = +2 Query: 155 GSDETTGEITGGKVQPVETADSRPR----FPQRHAEPDCTYYLKFGTCRFGMKCKFNHPA 322 G+ ET G Q E S R +P R DC++Y++ G+C++G CKFNHP Sbjct: 69 GNVETDSRALFGSDQKEEEEGSEKRMMMVYPVRPDSEDCSFYMRTGSCKYGSSCKFNHPV 128 Query: 323 R 325 R Sbjct: 129 R 129 Score = 43.5 bits (101), Expect = 3e-04 Identities = 15/29 (51%), Positives = 21/29 (72%) Frame = +2 Query: 233 PQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 P R E +C +Y++ G+C+FG CKFNHP Sbjct: 192 PIRPGEKECPFYMRNGSCKFGSDCKFNHP 220 Score = 35.8 bits (81), Expect = 0.064 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +2 Query: 233 PQRHAEPDCTYYLKFGTCRFGMKCKFNH 316 P R + CT+Y ++G C+FG C+F+H Sbjct: 378 PLRPDQSMCTHYSRYGICKFGPACRFDH 405 Score = 32.3 bits (72), Expect = 0.71 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = +2 Query: 254 DCTYYLKFGTCRFGMKCKFNH 316 +C YY + G C++G C+F+H Sbjct: 153 ECKYYFRTGGCKYGESCRFSH 173
>ZFNL1_ORYSA (Q5NAW2) Zinc finger CCCH type domain-containing protein ZFN-like 1| Length = 476 Score = 50.1 bits (118), Expect = 3e-06 Identities = 23/59 (38%), Positives = 31/59 (52%) Frame = +2 Query: 143 LGIAGSDETTGEITGGKVQPVETADSRPRFPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 +G+ G G GG D+ R P+R E DC YYL+ G C FG +C++NHP Sbjct: 33 MGLGGGGGGGGGGGGGD------GDAAGRLPERPGEEDCVYYLRTGACGFGDRCRYNHP 85 Score = 49.3 bits (116), Expect = 6e-06 Identities = 16/30 (53%), Positives = 23/30 (76%) Frame = +2 Query: 230 FPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 FP+R +PDC YY++ G C+FG CK++HP Sbjct: 304 FPERPGQPDCQYYMRTGDCKFGATCKYHHP 333 Score = 48.5 bits (114), Expect = 1e-05 Identities = 16/30 (53%), Positives = 23/30 (76%) Frame = +2 Query: 230 FPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 +P+R +P C YY+K GTC+FG CK++HP Sbjct: 105 YPERAGQPICEYYMKTGTCKFGTNCKYHHP 134 Score = 47.8 bits (112), Expect = 2e-05 Identities = 22/44 (50%), Positives = 28/44 (63%) Frame = +2 Query: 188 GKVQPVETADSRPRFPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 G V PV +S FP R E +C+YY+K G C+FG CKF+HP Sbjct: 138 GAVLPVMLNNSG--FPIRLGEKECSYYMKTGQCKFGTTCKFHHP 179 Score = 37.4 bits (85), Expect = 0.022 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +2 Query: 233 PQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 P R C YY + G CR+G+ CK++HP Sbjct: 351 PLRPGAQPCAYYAQNGYCRYGVACKYDHP 379
>ZFNL4_ARATH (Q94AD9) Zinc finger CCCH type domain-containing protein ZFN-like 4| Length = 404 Score = 48.5 bits (114), Expect = 1e-05 Identities = 17/40 (42%), Positives = 26/40 (65%) Frame = +2 Query: 200 PVETADSRPRFPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 P + A + P+R +PDC Y+LK G C++G CK++HP Sbjct: 77 PQDVAYYKEELPERIGQPDCEYFLKTGACKYGPTCKYHHP 116 Score = 47.4 bits (111), Expect = 2e-05 Identities = 18/29 (62%), Positives = 21/29 (72%) Frame = +2 Query: 233 PQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 P R E C YYL+ GTCRFG+ CKF+HP Sbjct: 133 PMRLGEKPCPYYLRTGTCRFGVACKFHHP 161 Score = 45.1 bits (105), Expect = 1e-04 Identities = 20/60 (33%), Positives = 30/60 (50%) Frame = +2 Query: 140 VLGIAGSDETTGEITGGKVQPVETADSRPRFPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 ++ I SD+ KV + P +P R E DC +YL+ G C +G C++NHP Sbjct: 15 LVSIRSSDKIEDAFRKMKVNETGVEELNP-YPDRPGERDCQFYLRTGLCGYGSSCRYNHP 73 Score = 37.7 bits (86), Expect = 0.017 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +2 Query: 233 PQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 P R +P C + +G C+FG CKF+HP Sbjct: 305 PARPGQPACGNFRSYGFCKFGPNCKFDHP 333 Score = 37.4 bits (85), Expect = 0.022 Identities = 10/24 (41%), Positives = 19/24 (79%) Frame = +2 Query: 248 EPDCTYYLKFGTCRFGMKCKFNHP 319 +P+C +++ GTC++G CK++HP Sbjct: 264 QPECRFFMNTGTCKYGDDCKYSHP 287
>ZFNL6_ARATH (Q9STM4) Putative zinc finger CCCH type domain-containing protein| ZFN-like 6 Length = 448 Score = 46.6 bits (109), Expect = 4e-05 Identities = 15/30 (50%), Positives = 23/30 (76%) Frame = +2 Query: 230 FPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 FP+R +P+C+YY+K G C+F CK++HP Sbjct: 343 FPERPDQPECSYYMKTGDCKFKFNCKYHHP 372 Score = 46.2 bits (108), Expect = 5e-05 Identities = 16/35 (45%), Positives = 24/35 (68%) Frame = +2 Query: 215 DSRPRFPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 +S +P R DC++Y++ G+C+FG CKFNHP Sbjct: 102 ESENVYPVRPGAEDCSFYMRTGSCKFGSSCKFNHP 136 Score = 44.7 bits (104), Expect = 1e-04 Identities = 15/29 (51%), Positives = 22/29 (75%) Frame = +2 Query: 233 PQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 P R E +C YY++ G+C++G +CKFNHP Sbjct: 202 PLRPGEVECPYYMRNGSCKYGAECKFNHP 230 Score = 37.4 bits (85), Expect = 0.022 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = +2 Query: 233 PQRHAEPDCTYYLKFGTCRFGMKCKFNH 316 P R + CTYY ++G C+FG C+F+H Sbjct: 390 PLRPDQNICTYYSRYGICKFGPACRFDH 417 Score = 35.4 bits (80), Expect = 0.084 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +2 Query: 254 DCTYYLKFGTCRFGMKCKFNH 316 DC YY + G C++G C+FNH Sbjct: 163 DCKYYFRTGGCKYGETCRFNH 183
>ZFN2_ARATH (O48772) Zinc finger CCCH type domain-containing protein ZFN2| Length = 453 Score = 45.1 bits (105), Expect = 1e-04 Identities = 16/29 (55%), Positives = 20/29 (68%) Frame = +2 Query: 233 PQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 P R E C YY++ G CRFG+ CKF+HP Sbjct: 127 PMRQGEKPCPYYMQTGLCRFGVACKFHHP 155 Score = 41.2 bits (95), Expect = 0.002 Identities = 17/43 (39%), Positives = 24/43 (55%) Frame = +2 Query: 191 KVQPVETADSRPRFPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 KV S P +P R E DC ++L+ G C +G C++NHP Sbjct: 29 KVNEDNMEQSSP-YPDRPGERDCQFFLRTGQCGYGNSCRYNHP 70 Score = 35.4 bits (80), Expect = 0.084 Identities = 13/33 (39%), Positives = 21/33 (63%) Frame = +2 Query: 221 RPRFPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 R + P+R +PDC + G C++G CK++HP Sbjct: 82 RDQLPERVGQPDC----ETGACKYGPTCKYHHP 110 Score = 35.0 bits (79), Expect = 0.11 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +2 Query: 233 PQRHAEPDCTYYLKFGTCRFGMKCKFNH 316 P R +P C + +G C+FG CKF+H Sbjct: 305 PARPGQPACGNFKAYGFCKFGANCKFDH 332 Score = 33.9 bits (76), Expect = 0.24 Identities = 9/22 (40%), Positives = 17/22 (77%) Frame = +2 Query: 254 DCTYYLKFGTCRFGMKCKFNHP 319 +C +++ GTC++G CK++HP Sbjct: 266 ECRFFMNTGTCKYGDDCKYSHP 287
>DHX57_MOUSE (Q6P5D3) Putative ATP-dependent RNA helicase DHX57 (EC 3.6.1.-)| (DEAH box protein 57) Length = 1388 Score = 34.3 bits (77), Expect = 0.19 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%) Frame = +2 Query: 239 RHAEPD-CTYYLKFGTCRFGMKCKFNH 316 R P+ C +YLK G C+FG KCKF H Sbjct: 298 RDTSPETCKFYLK-GNCKFGSKCKFKH 323
>DHX57_HUMAN (Q6P158) Putative ATP-dependent RNA helicase DHX57 (EC 3.6.1.-)| (DEAH box protein 57) Length = 1386 Score = 32.7 bits (73), Expect = 0.54 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = +2 Query: 257 CTYYLKFGTCRFGMKCKFNH 316 C +YLK G C+FG KC+F H Sbjct: 305 CKFYLK-GNCKFGSKCRFKH 323
>PRR3_RAT (Q6MG07) Proline-rich protein 3 (MHC class I region proline-rich| protein CAT56) Length = 186 Score = 32.0 bits (71), Expect = 0.92 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = +2 Query: 215 DSRPRFPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 DS P + P C ++ K G CR+ C F HP Sbjct: 145 DSPPMMEDKSDRPVCRHFSKKGHCRYEDHCAFYHP 179
>U2AFL_MOUSE (Q64707) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa| subunit-related protein 1 (U2(RNU2) small nuclear RNA auxillary factor 1-like 1) (SP2) Length = 428 Score = 32.0 bits (71), Expect = 0.92 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +2 Query: 251 PDCTYYLKFGTCRFGMKCKFNH 316 P C +Y K G CRFG +C H Sbjct: 161 PSCPFYNKTGACRFGNRCSRKH 182
>TTP_RAT (P47973) Tristetraproline (TTP) (Zinc finger protein 36) (Zfp-36)| (TIS11A protein) (TIS11) Length = 320 Score = 31.6 bits (70), Expect = 1.2 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = +2 Query: 185 GGKVQPVETADSR-PRFPQRHAEPDCTYYLKFGTCRFGMKCKFNH 316 G ++ P T+ + P R+ C Y + G CR+G KC+F H Sbjct: 77 GPELSPSPTSPTATPTTSSRYKTELCRTYSESGRCRYGAKCQFAH 121
>TTP_MOUSE (P22893) Tristetraproline (TTP) (Zinc finger protein 36) (Zfp-36)| (TIS11A protein) (TIS11) (Growth factor-inducible nuclear protein NUP475) (TPA-induced sequence 11) Length = 319 Score = 31.6 bits (70), Expect = 1.2 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = +2 Query: 185 GGKVQPVETADSR-PRFPQRHAEPDCTYYLKFGTCRFGMKCKFNH 316 G ++ P T+ + P R+ C Y + G CR+G KC+F H Sbjct: 76 GPELSPSPTSPTATPTTSSRYKTELCRTYSESGRCRYGAKCQFAH 120
>CEP57_MOUSE (Q8CEE0) Centrosomal protein of 57 kDa (Cep57 protein)| (Testis-specific protein 57) (Translokin) Length = 500 Score = 31.6 bits (70), Expect = 1.2 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +3 Query: 69 SRASSQTLQSLTSYPSRRDGTMMTSSESPEAMRPPER 179 S AS S+ + PSR +G M+ S SP + PP++ Sbjct: 7 SAASDSQFSSVLAEPSRSNGNMVRHSSSPYVLYPPDK 43
>TTP_HUMAN (P26651) Tristetraproline (TTP) (Zinc finger protein 36 homolog)| (Zfp-36) (TIS11A protein) (TIS11) (Growth factor-inducible nuclear protein NUP475) (G0/G1 switch regulatory protein 24) Length = 326 Score = 31.2 bits (69), Expect = 1.6 Identities = 14/47 (29%), Positives = 23/47 (48%) Frame = +2 Query: 176 EITGGKVQPVETADSRPRFPQRHAEPDCTYYLKFGTCRFGMKCKFNH 316 E++ P T+ + P R+ C + + G CR+G KC+F H Sbjct: 86 ELSPSPTSPTATSTT----PSRYKTELCRTFSESGRCRYGAKCQFAH 128
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 31.2 bits (69), Expect = 1.6 Identities = 18/52 (34%), Positives = 27/52 (51%) Frame = +3 Query: 66 RSRASSQTLQSLTSYPSRRDGTMMTSSESPEAMRPPERSLVEKCSRSRQRIR 221 RSR++S++ S RR + +S + PP+RS E S+SR R R Sbjct: 207 RSRSNSRSRSRSRSRDRRRSRSRSSSRSKSRSRSPPKRSRRESKSKSRSRSR 258
>CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22| Length = 907 Score = 31.2 bits (69), Expect = 1.6 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 3/66 (4%) Frame = +3 Query: 66 RSRASSQTLQSLTSYPSRRDGTMMTSSESPEAMRPPERSLVEKCSRSRQ--RIRGLGF-R 236 RSR+ S +S + SR T+S R P RS+ SRSR IRG + R Sbjct: 670 RSRSPSPRRRSYSRSRSRSVTPRRTNSNGRNNARSPSRSVSRSISRSRSPAPIRGRSYSR 729 Query: 237 NVTRSR 254 +V+RSR Sbjct: 730 SVSRSR 735
>B3AT_MOUSE (P04919) Band 3 anion transport protein (Anion exchange protein 1)| (AE 1) (Solute carrier family 4 member 1) (MEB3) (CD233 antigen) Length = 929 Score = 30.8 bits (68), Expect = 2.1 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%) Frame = -3 Query: 307 LALHPEAASSELQVVSTIRLRVTLRKPR--PRIRCLDRLHFSTSDLSGGLIASGDSEDVI 134 L L P A SE +++ + ++ L + R P D ++T DL+GG GD +D + Sbjct: 332 LVLPPTDAPSEKALLNLVPVQKELLRRRYLPSPAKPDPNLYNTLDLNGGKGGPGDEDDPL 391 Query: 133 IVPSRRLG*LVRDCK 89 R G L+RD + Sbjct: 392 RRTGRIFGGLIRDIR 406
>YQC1_SCHPO (O74463) Hypothetical protein C1739.01 in chromosome III| Length = 547 Score = 30.8 bits (68), Expect = 2.1 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = +2 Query: 251 PDCTYYLKFGTCRFGMKCKFNH 316 P C Y+LK G C+FG KC +H Sbjct: 72 PICKYFLK-GNCKFGPKCALSH 92
>DTX2_HUMAN (Q86UW9) Protein deltex-2 (Deltex-2) (Deltex2) (hDTX2)| Length = 622 Score = 30.0 bits (66), Expect = 3.5 Identities = 19/63 (30%), Positives = 28/63 (44%) Frame = +3 Query: 57 MPRRSRASSQTLQSLTSYPSRRDGTMMTSSESPEAMRPPERSLVEKCSRSRQRIRGLGFR 236 MP+ SR Q L +TS G + S +P+ PP L K S +R+R + + Sbjct: 325 MPKPSRVQ-QALAGMTSVLMSAIGLPVCLSRAPQPTSPPASRLASKSHGSVKRLRKMSVK 383 Query: 237 NVT 245 T Sbjct: 384 GAT 386
>U2AFM_HUMAN (Q15696) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa| subunit related-protein 2 (U2(RNU2) small nuclear RNA auxillary factor 1-like 2) (NY-REN-20 antigen) Length = 482 Score = 29.6 bits (65), Expect = 4.6 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +2 Query: 254 DCTYYLKFGTCRFGMKCKFNH 316 +C +Y K G CRFG +C H Sbjct: 171 NCPFYSKTGACRFGDRCSRKH 191
>U2AFL_HUMAN (Q15695) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa| subunit-related protein 1 (U2(RNU2) small nuclear RNA auxillary factor 1-like 1) Length = 479 Score = 29.6 bits (65), Expect = 4.6 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +2 Query: 254 DCTYYLKFGTCRFGMKCKFNH 316 +C +Y K G CRFG +C H Sbjct: 176 NCPFYSKTGACRFGDRCSRKH 196
>TTP_SHEEP (Q6S9E0) Tristetraproline (TTP) (Zinc finger protein 36 homolog)| (Zfp-36) Length = 325 Score = 29.6 bits (65), Expect = 4.6 Identities = 14/49 (28%), Positives = 22/49 (44%) Frame = +2 Query: 170 TGEITGGKVQPVETADSRPRFPQRHAEPDCTYYLKFGTCRFGMKCKFNH 316 + E++ P T P R+ C + + G CR+G KC+F H Sbjct: 82 SSELSPSPTSPTAT----PTTSSRYKTELCRTFSESGRCRYGAKCQFAH 126
>NUOG_MYCTU (P95175) NADH-quinone oxidoreductase chain G (EC 1.6.99.5) (NADH| dehydrogenase I, chain G) (NDH-1, chain G) Length = 806 Score = 29.6 bits (65), Expect = 4.6 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = +2 Query: 104 ELPKPSGWDDDDVLGIAGSDETTGEITGGKVQPVETAD 217 ELP +G D D +L A +DET + G ++P + AD Sbjct: 545 ELPAAAGRDADGILA-AAADETLAALLVGGIEPADFAD 581
>NUOG_MYCBO (P59962) NADH-quinone oxidoreductase chain G (EC 1.6.99.5) (NADH| dehydrogenase I, chain G) (NDH-1, chain G) Length = 806 Score = 29.6 bits (65), Expect = 4.6 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = +2 Query: 104 ELPKPSGWDDDDVLGIAGSDETTGEITGGKVQPVETAD 217 ELP +G D D +L A +DET + G ++P + AD Sbjct: 545 ELPAAAGRDADGILA-AAADETLAALLVGGIEPADFAD 581
>U2AFM_MOUSE (Q62377) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa| subunit related-protein 2 (U2(RNU2) small nuclear RNA auxillary factor 1-like 2) Length = 462 Score = 29.6 bits (65), Expect = 4.6 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +2 Query: 254 DCTYYLKFGTCRFGMKCKFNH 316 +C +Y K G CRFG +C H Sbjct: 175 NCPFYSKTGACRFGDRCSRKH 195
>U2AF1_SCHPO (Q09176) Splicing factor U2AF 23 kDa subunit (U2 auxiliary factor| 23 kDa subunit) (U2 snRNP auxiliary factor small subunit) (U2AF23) Length = 216 Score = 29.3 bits (64), Expect = 6.0 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +2 Query: 254 DCTYYLKFGTCRFGMKCKFNH 316 +C++Y K G CR G +C H Sbjct: 17 NCSFYYKIGACRHGERCSRKH 37
>K0853_HUMAN (Q5T200) Protein KIAA0853| Length = 1668 Score = 29.3 bits (64), Expect = 6.0 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +2 Query: 245 AEPDCTYYLKFGTCRFGMKCKFNH 316 AE C +LK G C +G C+F H Sbjct: 38 AETQCRNWLKTGNCLYGNTCRFVH 61
>Y487_TREPA (O83500) Hypothetical protein TP0487| Length = 525 Score = 29.3 bits (64), Expect = 6.0 Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 2/27 (7%) Frame = +1 Query: 46 RCWEC--RGDREPVHRPCNL*RATQAV 120 RC C RG+R VHR CN R T AV Sbjct: 22 RCKACGERGERGAVHRACNFKRRTAAV 48
>Y253_BUCAI (P57341) UPF0125 protein BU253| Length = 99 Score = 29.3 bits (64), Expect = 6.0 Identities = 12/27 (44%), Positives = 20/27 (74%) Frame = +3 Query: 387 IKLFRRTTIRREEWRQHNLRLLMRLKK 467 I+++R TI +EWR++N+ L +LKK Sbjct: 71 IEIYRNLTIDPKEWRRNNVFLSKKLKK 97
>CWC24_DEBHA (Q6BYU0) Pre-mRNA-splicing factor CWC24| Length = 232 Score = 28.9 bits (63), Expect = 7.8 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Frame = +2 Query: 152 AGSDETTGEITGGKVQPVETADSRPRFPQRHAEPD-CTYYLKFGTCRFGMKCKFNH 316 A +D++ GE + G ++P + +PD C +L+ G C +G CKF H Sbjct: 84 ATTDKSAGEKSVGPIKPPPISIKTTTITD--FQPDVCKDFLQTGYCGYGDTCKFLH 137
>PP1RA_XENLA (Q6GLQ4) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 Length = 819 Score = 28.9 bits (63), Expect = 7.8 Identities = 9/23 (39%), Positives = 13/23 (56%) Frame = +2 Query: 251 PDCTYYLKFGTCRFGMKCKFNHP 319 P C +++ G CR+ C F HP Sbjct: 789 PTCRHFMMKGNCRYENNCAFYHP 811
>TTP_BOVIN (P53781) Tristetraproline (TTP) (Zinc finger protein 36 homolog)| (Zfp-36) (TIS11A protein) (TIS11) Length = 324 Score = 28.9 bits (63), Expect = 7.8 Identities = 11/31 (35%), Positives = 16/31 (51%) Frame = +2 Query: 224 PRFPQRHAEPDCTYYLKFGTCRFGMKCKFNH 316 P R+ C + + G CR+G KC+F H Sbjct: 96 PTTSSRYKTELCRTFSESGRCRYGAKCQFAH 126
>PRR3_MOUSE (Q811B5) Proline-rich protein 3 (MHC class I region proline-rich| protein CAT56) Length = 190 Score = 28.9 bits (63), Expect = 7.8 Identities = 12/35 (34%), Positives = 16/35 (45%) Frame = +2 Query: 215 DSRPRFPQRHAEPDCTYYLKFGTCRFGMKCKFNHP 319 DS + P C ++ K G CR+ C F HP Sbjct: 149 DSPQMMEDKSDRPVCRHFSKKGHCRYEDHCAFYHP 183
>CEP57_BOVIN (Q865V0) Centrosomal protein of 57 kDa (Cep57 protein)| (Testis-specific protein 57) (Translokin) Length = 499 Score = 28.9 bits (63), Expect = 7.8 Identities = 11/37 (29%), Positives = 22/37 (59%) Frame = +3 Query: 69 SRASSQTLQSLTSYPSRRDGTMMTSSESPEAMRPPER 179 S S+ ++ + PS+ +G+M+ S SP + PP++ Sbjct: 7 SETSASQFSNILAEPSKSNGSMVRHSSSPYVVYPPDK 43 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,150,925 Number of Sequences: 219361 Number of extensions: 855917 Number of successful extensions: 3128 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 2957 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3124 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
