>FOS_TETFL (Q91496) Proto-oncogene protein c-fos (Cellular oncogene fos)|
          Length = 374

 Score = 33.5 bits (75), Expect = 0.37
 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
 Frame = -3

Query: 383 SFLSTPASIIPSTAFKFPTFISDARVVNTISCHSSFSGDNSSAILSMGMLAKISSAVFAL 204
           ++LST AS  P T+    T ++ +    T + +S F G NS ++LS    A +S +V  +
Sbjct: 207 AYLSTAASTQPQTSVPEATTVTSSHSTFTSTSNSIF-GSNSDSLLS---TATVSDSVVKM 262

Query: 203 TC--SDTLARTAETLARDDESSYPRRTQINLSTEPAVSIDW 87
           T   S  L  + + LA+ +  +      +NLS+    + DW
Sbjct: 263 TDLESSVLEESLDLLAKTEVETV-EVPDVNLSSSLYTAQDW 302

>PSAF_HORVU (P13192) Photosystem I reaction center subunit III, chloroplast|
           precursor (Light-harvesting complex I 17 kDa protein)
           (PSI-F)
          Length = 235

 Score = 32.3 bits (72), Expect = 0.83
 Identities = 23/66 (34%), Positives = 34/66 (51%)
 Frame = -3

Query: 365 ASIIPSTAFKFPTFISDARVVNTISCHSSFSGDNSSAILSMGMLAKISSAVFALTCSDTL 186
           ASI  STAF     +S      ++SC +S SGDN+++  +  + A I +   AL  S  L
Sbjct: 6   ASIATSTAFAAKPRLSRPPARLSVSCSAS-SGDNNNSTATPSLSASIKTFSAALALSSVL 64

Query: 185 ARTAET 168
             +A T
Sbjct: 65  LSSAAT 70

>FINC_CHICK (P11722) Fibronectin (FN) (Fragments)|
          Length = 1256

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = -3

Query: 281 SFSGDNSSAILSMGMLA-KISSAVFALTCSDTLARTAETLARDDESSYPRRTQINLSTEP 105
           + S D++SA++S  M+A K   +V+AL  S T       +   +  S PRR ++  +TE 
Sbjct: 738 NLSPDSTSAVVSGLMVATKYEVSVYALKDSLTSRPAQGVVTTLENVSPPRRARVTDATET 797

Query: 104 AVSIDW 87
            ++I W
Sbjct: 798 TITITW 803

>FINC_MOUSE (P11276) Fibronectin precursor (FN)|
          Length = 2477

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = -3

Query: 281  SFSGDNSSAILSMGMLA-KISSAVFALTCSDTLARTAETLARDDESSYPRRTQINLSTEP 105
            + S D+SS I+S  M+A K   +V+AL  + T       +   +  S PRR ++  +TE 
Sbjct: 1859 NLSPDSSSVIVSGLMVATKYEVSVYALKDTLTSRPAQGVITTLENVSPPRRARVTDATET 1918

Query: 104  AVSIDW 87
             ++I W
Sbjct: 1919 TITISW 1924

>FINC_PLEWA (Q91289) Fibronectin (FN) (Fragment)|
          Length = 1328

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = -3

Query: 281 SFSGDNSSAILSMGMLA-KISSAVFALTCSDTLARTAETLARDDESSYPRRTQINLSTEP 105
           + S D++SA+++  M+A K   +V+AL  S T       +   +  S PRR +I   TE 
Sbjct: 706 NLSPDSTSAVVTGLMVATKYEVSVYALKDSLTSRPAQGIVTTQENVSPPRRRRITDVTET 765

Query: 104 AVSIDW 87
            V+I W
Sbjct: 766 TVTITW 771

>TFA_BPMU (Q9T1U9) Probable tail fiber assembly protein (gpU)|
          Length = 175

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -1

Query: 187 WQEQQKRWLEMMNPHIHEEHKLIYQQNLLFQ*IGRDLHSLPWKKTTVIAL--VTATIRAC 14
           W E  K W E +N    +  K++Y +N +   I +D  +L  +  +V+ +  +TA  RA 
Sbjct: 30  WSEDGKNWYEEVNNFQDDTIKIVYDENNIIVAITKDASTLNPEGFSVVEIPDITANRRAD 89

Query: 13  D 11
           D
Sbjct: 90  D 90

>FOS_FUGRU (P53450) Proto-oncogene protein c-fos (Cellular oncogene fos)|
          Length = 376

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
 Frame = -3

Query: 377 LSTPASIIPSTAFKFPTFISDARVVNTISCHSSFSGDNSSAILSMGMLAKISSAVFALTC 198
           LST  S    T+    T ++ +    T + +S FSG + S + +    A +S++V  +T 
Sbjct: 210 LSTTVSTQLQTSIPEATTVTSSHSTFTSTSNSIFSGSSDSLLST----ATVSNSVVKMTD 265

Query: 197 SDT--LARTAETLARDDESSYPRRTQINLSTEPAVSIDW 87
            D+  L  + + LA+ +  +      +NLS     + DW
Sbjct: 266 LDSSVLEESLDLLAKTEAETARSVPDVNLSNSLFAAQDW 304

>FINC_RAT (P04937) Fibronectin precursor (FN)|
          Length = 2477

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
 Frame = -3

Query: 281  SFSGDNSSAILSMGMLA-KISSAVFALTCSDTL-ARTAETLARDDES-SYPRRTQINLST 111
            + S D++S I+S  M+A K   +V+AL   DTL +R A+ +    E+ S PRR ++  +T
Sbjct: 1859 NLSPDSTSVIVSGLMVATKYEVSVYAL--KDTLTSRPAQGVVTTLENVSPPRRARVTDAT 1916

Query: 110  EPAVSIDW 87
            E  ++I W
Sbjct: 1917 ETTITISW 1924

>FINC_HUMAN (P02751) Fibronectin precursor (FN) (Cold-insoluble globulin) (CIG)|
          Length = 2386

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
 Frame = -3

Query: 269  DNSSAILSMGMLA-KISSAVFALTCSDTL-ARTAETLARDDES-SYPRRTQINLSTEPAV 99
            D+SS ++S  M+A K   +V+AL   DTL +R A+ +    E+ S PRR ++  +TE  +
Sbjct: 1773 DSSSVVVSGLMVATKYEVSVYAL--KDTLTSRPAQGVVTTLENVSPPRRARVTDATETTI 1830

Query: 98   SIDW 87
            +I W
Sbjct: 1831 TISW 1834

>FINC_BOVIN (P07589) Fibronectin (FN)|
          Length = 2265

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
 Frame = -3

Query: 269  DNSSAILSMGMLA-KISSAVFALTCSDTL-ARTAETLARDDES-SYPRRTQINLSTEPAV 99
            D+SS ++S  M+A K   +V+AL   DTL +R A+ +    E+ S PRR ++  +TE  +
Sbjct: 1652 DSSSVVVSGLMVATKYEVSVYAL--KDTLTSRPAQGVVTTLENVSPPRRARVTDATETTI 1709

Query: 98   SIDW 87
            +I W
Sbjct: 1710 TISW 1713

>YAGE_ECOLI (P75682) Hypothetical protein yagE|
          Length = 309

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +1

Query: 298 VFTTLASLIKVGNLKAVEGMIEAGVDKKLLVLLGCGSEISQ 420
           +FT    L K G    ++ +I+AGVD   L  LG G E SQ
Sbjct: 24  IFTADGQLDKPGTAALIDDLIKAGVDG--LFFLGSGGEFSQ 62

>CTH1_YEAST (P47976) Zinc finger protein CTH1|
          Length = 325

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = -3

Query: 413 ISEPQPKSTRSFLSTPASIIPSTAFKFPTFISDARVVNTISCHSSFSGDNSSAILS 246
           +SE  P+ +    S P    P   FK    ISD+R  NT+  ++ F+G+N+ + L+
Sbjct: 74  LSEYSPRPSPWLPSKPNCYHPLGDFK-DLIISDSRPTNTLPINNPFAGNNNISTLA 128

>TTC12_HUMAN (Q9H892) Tetratricopeptide repeat protein 12 (TPR repeat protein|
           12)
          Length = 705

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 334 NLKAVEGMIEAGVDKKLLVLLGCGSEISQHHAIIML 441
           +LK VE  + AGV KK++  L  G E +  +AI +L
Sbjct: 551 SLKIVEEALRAGVVKKMMKFLKTGGETASRYAIKIL 586

>SP96_DICDI (P14328) Spore coat protein SP96|
          Length = 600

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 28/127 (22%), Positives = 52/127 (40%)
 Frame = -3

Query: 476 SLSGAPSSQKVLSMIIA*CCEISEPQPKSTRSFLSTPASIIPSTAFKFPTFISDARVVNT 297
           S S A SS    +   +     +   P S+ S  S+P+S   S++       + +   ++
Sbjct: 461 SSSAASSSPSSSAASSSPSSSAASSSPSSSASSSSSPSSSASSSS-------APSSSASS 513

Query: 296 ISCHSSFSGDNSSAILSMGMLAKISSAVFALTCSDTLARTAETLARDDESSYPRRTQINL 117
            S  SS +  +S++  S    A  ++   A T + T A T  T A    ++    T   +
Sbjct: 514 SSAPSSSASSSSASSSSASSAATTAATTIATTAATTTATTTATTATTTATTTATTTAATI 573

Query: 116 STEPAVS 96
           +T  A +
Sbjct: 574 ATTTAAT 580


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,939,938
Number of Sequences: 219361
Number of extensions: 1329753
Number of successful extensions: 4186
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4185
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)