ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags6k23 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_464543.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3123 Score = 391 bits (197), Expect = e-105 Identities = 441/521 (84%), Gaps = 1/521 (0%) Strand = Plus / Plus Query: 1 tttctgttgggtcacaagctcttattgttgctgtcaccaaagctattacagtcgtctttt 60 ||||||| |||||| | |||| |||||| ||||||||||| |||||||||| |||||| Sbjct: 1766 tttctgtggggtcaacatctctcattgttactgtcaccaaatctattacagtaatctttt 1825 Query: 61 tccaaggnagactatgcaaatctcgcccaatctattgaaacagcaggttctgttgataaa 120 ||||||| ||| ||||| || || || || ||| ||||||||||||||||||| |||||| Sbjct: 1826 tccaagg-agattatgctaagcttgctcagtctcttgaaacagcaggttctgtggataaa 1884 Query: 121 ttaatttgtgttcttcgtggatatgaggattcatcatctctagccaacgtttctgctgtt 180 |||||| |||||||||||| | ||| ||||| || |||||||||| |||||| ||||| Sbjct: 1885 ttaattcatgttcttcgtggctgtgaagattcttctactctagccaatgtttctactgtt 1944 Query: 181 cttgccaaggtatctgagcatgttagtgcgaaaactgccgacgaaattttggcaagcatt 240 ||||||||| |||||||||||||| ||| | |||||| || ||||||||||||| |||| Sbjct: 1945 cttgccaagatatctgagcatgttgatgctacaactgctgatgaaattttggcaaccatt 2004 Query: 241 cccatggacaaaattgcagaactattgtctccagaaaatgaggagtggcatgaaattgtg 300 || |||||| ||||||| || || | ||||| || ||||| || ||||||||||||||| Sbjct: 2005 cctatggaccaaattgcgaaattactctctcctgagaatgaagaatggcatgaaattgtg 2064 Query: 301 ttcacaactctagcatcactgataaaagtgggaaatttaaaagctgtcgagggaatgatc 360 || |||||||||||||| ||||||| |||||||| |||| ||||| ||| ||||||| Sbjct: 2065 tttacaactctagcatctttgataaaggtgggaaagttaagggctgttgagacaatgatc 2124 Query: 361 gaagcaggagttgacaaaaagctccttgtacttttaggttgcggttctgagatctcacag 420 ||| ||||| ||||||| ||||| ||||| ||| |||| | |||||||||||||||||| Sbjct: 2125 gaatcaggaattgacaagaagcttcttgttcttctaggcagtggttctgagatctcacag 2184 Query: 421 catcatgcaattatcatgctcaaaactttctgtgagcttggtgctccacttaaagagtgc 480 |||||||| ||||||||||| ||||| |||||||| |||||||| |||||| | | |||| Sbjct: 2185 catcatgcgattatcatgctaaaaacattctgtgaacttggtgcgccacttcaggggtgc 2244 Query: 481 atggggcctggattgttgatacatttgccatggcatgctcg 521 ||||| |||||| ||||| |||||||| ||||||||||| Sbjct: 2245 atgggacctggagcgttgactcatttgccttggcatgctcg 2285
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 391 bits (197), Expect = e-105 Identities = 441/521 (84%), Gaps = 1/521 (0%) Strand = Plus / Minus Query: 1 tttctgttgggtcacaagctcttattgttgctgtcaccaaagctattacagtcgtctttt 60 ||||||| |||||| | |||| |||||| ||||||||||| |||||||||| |||||| Sbjct: 5786652 tttctgtggggtcaacatctctcattgttactgtcaccaaatctattacagtaatctttt 5786593 Query: 61 tccaaggnagactatgcaaatctcgcccaatctattgaaacagcaggttctgttgataaa 120 ||||||| ||| ||||| || || || || ||| ||||||||||||||||||| |||||| Sbjct: 5786592 tccaagg-agattatgctaagcttgctcagtctcttgaaacagcaggttctgtggataaa 5786534 Query: 121 ttaatttgtgttcttcgtggatatgaggattcatcatctctagccaacgtttctgctgtt 180 |||||| |||||||||||| | ||| ||||| || |||||||||| |||||| ||||| Sbjct: 5786533 ttaattcatgttcttcgtggctgtgaagattcttctactctagccaatgtttctactgtt 5786474 Query: 181 cttgccaaggtatctgagcatgttagtgcgaaaactgccgacgaaattttggcaagcatt 240 ||||||||| |||||||||||||| ||| | |||||| || ||||||||||||| |||| Sbjct: 5786473 cttgccaagatatctgagcatgttgatgctacaactgctgatgaaattttggcaaccatt 5786414 Query: 241 cccatggacaaaattgcagaactattgtctccagaaaatgaggagtggcatgaaattgtg 300 || |||||| ||||||| || || | ||||| || ||||| || ||||||||||||||| Sbjct: 5786413 cctatggaccaaattgcgaaattactctctcctgagaatgaagaatggcatgaaattgtg 5786354 Query: 301 ttcacaactctagcatcactgataaaagtgggaaatttaaaagctgtcgagggaatgatc 360 || |||||||||||||| ||||||| |||||||| |||| ||||| ||| ||||||| Sbjct: 5786353 tttacaactctagcatctttgataaaggtgggaaagttaagggctgttgagacaatgatc 5786294 Query: 361 gaagcaggagttgacaaaaagctccttgtacttttaggttgcggttctgagatctcacag 420 ||| ||||| ||||||| ||||| ||||| ||| |||| | |||||||||||||||||| Sbjct: 5786293 gaatcaggaattgacaagaagcttcttgttcttctaggcagtggttctgagatctcacag 5786234 Query: 421 catcatgcaattatcatgctcaaaactttctgtgagcttggtgctccacttaaagagtgc 480 |||||||| ||||||||||| ||||| |||||||| |||||||| |||||| | | |||| Sbjct: 5786233 catcatgcgattatcatgctaaaaacattctgtgaacttggtgcgccacttcaggggtgc 5786174 Query: 481 atggggcctggattgttgatacatttgccatggcatgctcg 521 ||||| |||||| ||||| |||||||| ||||||||||| Sbjct: 5786173 atgggacctggagcgttgactcatttgccttggcatgctcg 5786133
>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0544H11 Length = 178376 Score = 391 bits (197), Expect = e-105 Identities = 441/521 (84%), Gaps = 1/521 (0%) Strand = Plus / Minus Query: 1 tttctgttgggtcacaagctcttattgttgctgtcaccaaagctattacagtcgtctttt 60 ||||||| |||||| | |||| |||||| ||||||||||| |||||||||| |||||| Sbjct: 16454 tttctgtggggtcaacatctctcattgttactgtcaccaaatctattacagtaatctttt 16395 Query: 61 tccaaggnagactatgcaaatctcgcccaatctattgaaacagcaggttctgttgataaa 120 ||||||| ||| ||||| || || || || ||| ||||||||||||||||||| |||||| Sbjct: 16394 tccaagg-agattatgctaagcttgctcagtctcttgaaacagcaggttctgtggataaa 16336 Query: 121 ttaatttgtgttcttcgtggatatgaggattcatcatctctagccaacgtttctgctgtt 180 |||||| |||||||||||| | ||| ||||| || |||||||||| |||||| ||||| Sbjct: 16335 ttaattcatgttcttcgtggctgtgaagattcttctactctagccaatgtttctactgtt 16276 Query: 181 cttgccaaggtatctgagcatgttagtgcgaaaactgccgacgaaattttggcaagcatt 240 ||||||||| |||||||||||||| ||| | |||||| || ||||||||||||| |||| Sbjct: 16275 cttgccaagatatctgagcatgttgatgctacaactgctgatgaaattttggcaaccatt 16216 Query: 241 cccatggacaaaattgcagaactattgtctccagaaaatgaggagtggcatgaaattgtg 300 || |||||| ||||||| || || | ||||| || ||||| || ||||||||||||||| Sbjct: 16215 cctatggaccaaattgcgaaattactctctcctgagaatgaagaatggcatgaaattgtg 16156 Query: 301 ttcacaactctagcatcactgataaaagtgggaaatttaaaagctgtcgagggaatgatc 360 || |||||||||||||| ||||||| |||||||| |||| ||||| ||| ||||||| Sbjct: 16155 tttacaactctagcatctttgataaaggtgggaaagttaagggctgttgagacaatgatc 16096 Query: 361 gaagcaggagttgacaaaaagctccttgtacttttaggttgcggttctgagatctcacag 420 ||| ||||| ||||||| ||||| ||||| ||| |||| | |||||||||||||||||| Sbjct: 16095 gaatcaggaattgacaagaagcttcttgttcttctaggcagtggttctgagatctcacag 16036 Query: 421 catcatgcaattatcatgctcaaaactttctgtgagcttggtgctccacttaaagagtgc 480 |||||||| ||||||||||| ||||| |||||||| |||||||| |||||| | | |||| Sbjct: 16035 catcatgcgattatcatgctaaaaacattctgtgaacttggtgcgccacttcaggggtgc 15976 Query: 481 atggggcctggattgttgatacatttgccatggcatgctcg 521 ||||| |||||| ||||| |||||||| ||||||||||| Sbjct: 15975 atgggacctggagcgttgactcatttgccttggcatgctcg 15935
>dbj|AP004045.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1135_F06 Length = 102230 Score = 391 bits (197), Expect = e-105 Identities = 441/521 (84%), Gaps = 1/521 (0%) Strand = Plus / Minus Query: 1 tttctgttgggtcacaagctcttattgttgctgtcaccaaagctattacagtcgtctttt 60 ||||||| |||||| | |||| |||||| ||||||||||| |||||||||| |||||| Sbjct: 76166 tttctgtggggtcaacatctctcattgttactgtcaccaaatctattacagtaatctttt 76107 Query: 61 tccaaggnagactatgcaaatctcgcccaatctattgaaacagcaggttctgttgataaa 120 ||||||| ||| ||||| || || || || ||| ||||||||||||||||||| |||||| Sbjct: 76106 tccaagg-agattatgctaagcttgctcagtctcttgaaacagcaggttctgtggataaa 76048 Query: 121 ttaatttgtgttcttcgtggatatgaggattcatcatctctagccaacgtttctgctgtt 180 |||||| |||||||||||| | ||| ||||| || |||||||||| |||||| ||||| Sbjct: 76047 ttaattcatgttcttcgtggctgtgaagattcttctactctagccaatgtttctactgtt 75988 Query: 181 cttgccaaggtatctgagcatgttagtgcgaaaactgccgacgaaattttggcaagcatt 240 ||||||||| |||||||||||||| ||| | |||||| || ||||||||||||| |||| Sbjct: 75987 cttgccaagatatctgagcatgttgatgctacaactgctgatgaaattttggcaaccatt 75928 Query: 241 cccatggacaaaattgcagaactattgtctccagaaaatgaggagtggcatgaaattgtg 300 || |||||| ||||||| || || | ||||| || ||||| || ||||||||||||||| Sbjct: 75927 cctatggaccaaattgcgaaattactctctcctgagaatgaagaatggcatgaaattgtg 75868 Query: 301 ttcacaactctagcatcactgataaaagtgggaaatttaaaagctgtcgagggaatgatc 360 || |||||||||||||| ||||||| |||||||| |||| ||||| ||| ||||||| Sbjct: 75867 tttacaactctagcatctttgataaaggtgggaaagttaagggctgttgagacaatgatc 75808 Query: 361 gaagcaggagttgacaaaaagctccttgtacttttaggttgcggttctgagatctcacag 420 ||| ||||| ||||||| ||||| ||||| ||| |||| | |||||||||||||||||| Sbjct: 75807 gaatcaggaattgacaagaagcttcttgttcttctaggcagtggttctgagatctcacag 75748 Query: 421 catcatgcaattatcatgctcaaaactttctgtgagcttggtgctccacttaaagagtgc 480 |||||||| ||||||||||| ||||| |||||||| |||||||| |||||| | | |||| Sbjct: 75747 catcatgcgattatcatgctaaaaacattctgtgaacttggtgcgccacttcaggggtgc 75688 Query: 481 atggggcctggattgttgatacatttgccatggcatgctcg 521 ||||| |||||| ||||| |||||||| ||||||||||| Sbjct: 75687 atgggacctggagcgttgactcatttgccttggcatgctcg 75647
>gb|AC099538.2| Homo sapiens chromosome 3 clone RP11-90I9, complete sequence Length = 170033 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 170 tttctgctgttcttgccaaggtatct 195 ||||| |||||||||||||||||||| Sbjct: 131881 tttcttctgttcttgccaaggtatct 131906
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 266 tgtctccagaaaatgaggagtg 287 |||||||||||||||||||||| Sbjct: 4099848 tgtctccagaaaatgaggagtg 4099827
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 322 ataaaagtgggaaatttaaaag 343 |||||||||||||||||||||| Sbjct: 779344 ataaaagtgggaaatttaaaag 779365
>gb|AC100180.12| Mus musculus chromosome 1, clone RP23-53J14, complete sequence Length = 188055 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 gacgaaattttggcaagcatt 240 ||||||||||||||||||||| Sbjct: 60494 gacgaaattttggcaagcatt 60514
>gb|AC165156.3| Mus musculus BAC clone RP23-298I7 from chromosome 9, complete sequence Length = 198962 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 29 tgctgtcaccaaagctattac 49 ||||||||||||||||||||| Sbjct: 79634 tgctgtcaccaaagctattac 79614
>emb|BX511033.5| Zebrafish DNA sequence from clone CH211-116M9 in linkage group 5, complete sequence Length = 51202 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 aaacagcaggttctgttgata 118 ||||||||||||||||||||| Sbjct: 8256 aaacagcaggttctgttgata 8236
>gb|AC104842.4| Homo sapiens BAC clone RP11-544D5 from 2, complete sequence Length = 150622 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 251 aaattgcagaactattgtctc 271 ||||||||||||||||||||| Sbjct: 34891 aaattgcagaactattgtctc 34911
>gb|AC156837.2| Mus musculus BAC clone RP23-18K24 from chromosome 9, complete sequence Length = 205623 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 29 tgctgtcaccaaagctattac 49 ||||||||||||||||||||| Sbjct: 36 tgctgtcaccaaagctattac 16
>gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete genome Length = 2314078 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 76 gcaaatctcgcccaatctattgaa 99 ||||||||||| |||||||||||| Sbjct: 367707 gcaaatctcgcacaatctattgaa 367684
>ref|XM_711343.1| Candida albicans SC5314 CIRT1 transposase pseudogene fragment (CaO19_7302), mRNA Length = 954 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 taaaagtgggaaatttaaaa 342 |||||||||||||||||||| Sbjct: 249 taaaagtgggaaatttaaaa 268
>ref|XM_705112.1| Candida albicans SC5314 putative Cirt1 transposase (CaO19.3492), mRNA Length = 1587 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 taaaagtgggaaatttaaaa 342 |||||||||||||||||||| Sbjct: 69 taaaagtgggaaatttaaaa 88
>ref|XM_455158.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F01727g predicted mRNA Length = 1215 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 169 gtttctgctgttcttgccaaggta 192 ||||||||||||||| |||||||| Sbjct: 656 gtttctgctgttcttaccaaggta 679
>gb|AC138026.4| Mus musculus BAC clone RP24-501L6 from chromosome 10, complete sequence Length = 183477 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 ccatggcatgctcggcttgc 527 |||||||||||||||||||| Sbjct: 159518 ccatggcatgctcggcttgc 159537
>ref|XM_503737.1| Yarrowia lipolytica CLIB122, YALI0E09493g predicted mRNA Length = 6561 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 ggagttgacaaaaagctcct 386 |||||||||||||||||||| Sbjct: 1017 ggagttgacaaaaagctcct 998
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 169 gtttctgctgttcttgccaaggta 192 ||||||||||||||| |||||||| Sbjct: 162785 gtttctgctgttcttaccaaggta 162762
>ref|NM_001016908.2| Xenopus tropicalis general transcription factor IIA, 1, 19/37kDa (gtf2a1), mRNA Length = 3096 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 117 taaattaatttgtgttcttcgtgg 140 ||||||||||||||||||| |||| Sbjct: 2122 taaattaatttgtgttctttgtgg 2145
>gb|AC127071.3| Homo sapiens 12 BAC RP11-200K12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 63578 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 tcatgctcaaaactttctgt 453 |||||||||||||||||||| Sbjct: 9484 tcatgctcaaaactttctgt 9465
>gb|AF259783.1| Candida albicans transposon Cirt1 transposase pseudogene, complete sequence Length = 1804 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 taaaagtgggaaatttaaaa 342 |||||||||||||||||||| Sbjct: 184 taaaagtgggaaatttaaaa 203
>gb|AF139375.1| Candida albicans Cirt1 transposase pseudogene, complete sequence Length = 1804 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 taaaagtgggaaatttaaaa 342 |||||||||||||||||||| Sbjct: 184 taaaagtgggaaatttaaaa 203
>gb|AC153947.3| Mus musculus 10 BAC RP24-408C20 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 209414 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 302 tcacaactctagcatcactgataa 325 |||||||||| ||||||||||||| Sbjct: 32791 tcacaactcttgcatcactgataa 32814
>emb|CR848470.2| Xenopus tropicalis finished cDNA, clone TEgg086f18 Length = 3096 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 117 taaattaatttgtgttcttcgtgg 140 ||||||||||||||||||| |||| Sbjct: 2122 taaattaatttgtgttctttgtgg 2145
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 ggagttgacaaaaagctcct 386 |||||||||||||||||||| Sbjct: 1150637 ggagttgacaaaaagctcct 1150656 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,010,922 Number of Sequences: 3902068 Number of extensions: 5010922 Number of successful extensions: 90221 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90061 Number of HSP's gapped (non-prelim): 156 length of query: 532 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 509 effective length of database: 17,143,297,704 effective search space: 8725938531336 effective search space used: 8725938531336 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
