ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags6k17 |
|---|---|
| Clone Library Name | barley_pub |
>IF3I_HUMAN (Q9Y262) Eukaryotic translation initiation factor 3 subunit| 6-interacting protein Length = 564 Score = 179 bits (455), Expect = 4e-45 Identities = 95/197 (48%), Positives = 136/197 (69%), Gaps = 1/197 (0%) Frame = +1 Query: 7 QVLGYYSMIGLLRIHCLLGDYHTGLKCLAPINLNQQGVYTIVIGSHISTIYHYGFANLMM 186 ++LGY+S++GLLR+H LLGDY+ +K L I LN++ +Y+ V ++T Y+ GFA LMM Sbjct: 267 KMLGYFSLVGLLRLHSLLGDYYQAIKVLENIELNKKSMYSRVPECQVTTYYYVGFAYLMM 326 Query: 187 RRYVDATKEFNKILLYIIKYKQYHQKSP-QYDQILKKNEQMYALLAICLSLCPQNKLIDE 363 RRY DA + F ILLYI + K Q++ +Y+ I K+NEQM+ALLAI L++ P IDE Sbjct: 327 RRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMINKQNEQMHALLAIALTMYPMR--IDE 384 Query: 364 NVSTQLKEKYNDKMTKMQRFDDEAYAAYDELFSYACPKFITPSPPVLDQPLTNYNQDAYR 543 ++ QL+EKY DKM +MQ+ D + Y+ELFSY+CPKF++P P D NY+++ + Sbjct: 385 SIHLQLREKYGDKMLRMQKGDPQ---VYEELFSYSCPKFLSPVVPNYDNVHPNYHKEPFL 441 Query: 544 LQLKLFLYEVKQQQLLS 594 QLK+F EV+QQ LS Sbjct: 442 QQLKVFSDEVQQQAQLS 458
>KIF5C_HUMAN (O60282) Kinesin heavy chain isoform 5C (Kinesin heavy chain| neuron-specific 2) Length = 957 Score = 35.8 bits (81), Expect = 0.097 Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 12/128 (9%) Frame = +1 Query: 85 CLAPINLNQ-QGVYTIVIGSHISTIYHYGFANLMM-----RRYVDATKEFNKILLYIIKY 246 C +P N+ + T++ G TI + NL + ++ + KE NK L +I++ Sbjct: 303 CCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKTLKNVIQH 362 Query: 247 KQYHQKSPQYDQILKKNEQMYALLAICLSLCPQNKLIDE------NVSTQLKEKYNDKMT 408 + + + + ++EQ+ A L C +ID +ST+ KEKY+++++ Sbjct: 363 LEMELNRWRNGEAVPEDEQISAKDQKNLEPCDNTPIIDNIAPVVAGISTEEKEKYDEEIS 422 Query: 409 KMQRFDDE 432 + R D+ Sbjct: 423 SLYRQLDD 430
>RPOC_PLAFA (P21422) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6)| Length = 575 Score = 32.3 bits (72), Expect = 1.1 Identities = 25/83 (30%), Positives = 39/83 (46%) Frame = +1 Query: 67 YHTGLKCLAPINLNQQGVYTIVIGSHISTIYHYGFANLMMRRYVDATKEFNKILLYIIKY 246 Y TG +A + LN+ Y + Y Y F+N+ ++Y K F+KI LY KY Sbjct: 120 YLTGPLKVASLLLNKNVFYLKFL-----IYYKYFFSNIKYKQYFYYNKLFSKINLYKKKY 174 Query: 247 KQYHQKSPQYDQILKKNEQMYAL 315 K Q ++ + KK + + L Sbjct: 175 KNIIQYLFSHNILYKKLQNINLL 197
>SYI_BUCAI (P57249) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 940 Score = 30.8 bits (68), Expect = 3.1 Identities = 22/102 (21%), Positives = 42/102 (41%) Frame = +1 Query: 160 HYGFANLMMRRYVDATKEFNKILLYIIKYKQYHQKSPQYDQILKKNEQMYALLAICLSLC 339 +Y F ++ R + E L IIK +QY K ++ + Y + ++ + Sbjct: 707 NYNFHAVIQRLMYFCSIEMGSFYLDIIKDRQYTLKKHSQERRSSQTAIYYIINSLVRWIA 766 Query: 340 PQNKLIDENVSTQLKEKYNDKMTKMQRFDDEAYAAYDELFSY 465 P + + + L E + + + FD Y D+LF+Y Sbjct: 767 PILSFTADEIWSYLPENNSQYVFMEEWFDKLFYLDQDDLFNY 808
>CENPF_HUMAN (P49454) CENP-F kinetochore protein (Centromere protein F) (Mitosin)| (AH antigen) Length = 3210 Score = 30.0 bits (66), Expect = 5.3 Identities = 15/54 (27%), Positives = 26/54 (48%) Frame = +1 Query: 253 YHQKSPQYDQILKKNEQMYALLAICLSLCPQNKLIDENVSTQLKEKYNDKMTKM 414 Y S +Y +KN ++ LL C SLC K E + +++ + +TK+ Sbjct: 1036 YEDLSQKYKAAQEKNSKLECLLNECTSLCENRKNELEQLKEAFAKEHQEFLTKL 1089
>VP2_ROTBR (P12472) RNA-binding protein VP2 (Major internal core protein)| Length = 880 Score = 30.0 bits (66), Expect = 5.3 Identities = 14/30 (46%), Positives = 21/30 (70%) Frame = +1 Query: 202 ATKEFNKILLYIIKYKQYHQKSPQYDQILK 291 +TKE +K LL ++K K+ HQK QY+ + K Sbjct: 64 STKEESKQLLEVLKTKEEHQKEIQYEILQK 93
>VP2_ROTBU (P17462) RNA-binding protein VP2 (Major internal core protein)| Length = 881 Score = 30.0 bits (66), Expect = 5.3 Identities = 14/30 (46%), Positives = 21/30 (70%) Frame = +1 Query: 202 ATKEFNKILLYIIKYKQYHQKSPQYDQILK 291 +TKE +K LL ++K K+ HQK QY+ + K Sbjct: 64 STKEESKQLLEVLKTKEEHQKEIQYEILQK 93
>COAT_CERV (P05399) Probable coat protein| Length = 494 Score = 29.6 bits (65), Expect = 6.9 Identities = 19/75 (25%), Positives = 36/75 (48%) Frame = +1 Query: 247 KQYHQKSPQYDQILKKNEQMYALLAICLSLCPQNKLIDENVSTQLKEKYNDKMTKMQRFD 426 KQY K P + K + A A SL +KL++E ++ + + K K++RF+ Sbjct: 290 KQYLAKIPIVGEKASKRFEEEASAATSYSLGFAHKLVNEELAKICE--LSKKQKKLKRFN 347 Query: 427 DEAYAAYDELFSYAC 471 + +++ + Y C Sbjct: 348 KNCCSTFEKPYEYGC 362
>HGLB_SCHMA (P09841) Hemoglobinase precursor (EC 3.4.22.34) (Antigen SM32)| Length = 429 Score = 29.6 bits (65), Expect = 6.9 Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Frame = +1 Query: 190 RYVDATKEFNKILLYIIKYKQYHQKSPQYDQILKKNEQMYALLAICLSLCPQNKLI-DEN 366 +Y+ + K ++K+++YI + ++ + QIL N +YA A + C + D Sbjct: 174 KYLHSHKRYSKLVIYI----EANESGSMFQQILPSNLSIYATTAANSTECSYSTFCGDPT 229 Query: 367 VSTQLKEKYN 396 ++T L + Y+ Sbjct: 230 ITTCLADLYS 239
>FAEHP_METAC (Q8THA9) Fae/hps bifunctional enzyme [Includes:| Formaldehyde-activating enzyme (EC 4.3.-.-) (Fae); 3-hexulose-6-phosphate synthase (EC 4.1.2.-) (HPS) (D-arabino-3-hexulose-6-phosphate formaldehyde lyase)] Length = 392 Score = 29.6 bits (65), Expect = 6.9 Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 8/106 (7%) Frame = +1 Query: 157 YHYGFANLMMRRYVDATKEFNKIL-------LYIIKYKQYHQKSPQYDQILKKNEQMYAL 315 Y+YG L ++R ++ + NK+L I+ +K P Y Q+ N + + Sbjct: 128 YNYGATKLAIKRALEGFPDINKVLEESNKSTHAIMGFKVTRLWDPPYLQVAFDNPNLEFV 187 Query: 316 LAICLSLCPQNKLIDENVSTQLKEKYN-DKMTKMQRFDDEAYAAYD 450 L+ +S P + + T L ++Y D ++K+++ +A+ D Sbjct: 188 LS-AISQIPNSDHVIIEAGTPLIKRYGVDVISKIRQVRPDAFIVAD 232
>SYL_MYCPU (Q98RB6) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 807 Score = 29.6 bits (65), Expect = 6.9 Identities = 13/45 (28%), Positives = 28/45 (62%) Frame = +1 Query: 319 AICLSLCPQNKLIDENVSTQLKEKYNDKMTKMQRFDDEAYAAYDE 453 A L++ P++ L+++ V+++ KEK D + + ++ DD A +E Sbjct: 257 ATFLTISPEHPLVEKIVTSENKEKVKDFIKEFEKLDDRQKADKNE 301
>FOR3_SCHPO (O94532) Formin-3| Length = 1461 Score = 29.3 bits (64), Expect = 9.1 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%) Frame = +1 Query: 187 RRYVDATKEFNKILLYIIKYKQ-YHQKSPQYDQILKKNEQMYALLAICLSLCPQNKLIDE 363 R + T + N Y++ Y YHQK+ D++L + EQ+ + + + P+ Sbjct: 57 REDLSLTSDDNNDPEYVMCYNTVYHQKTKINDKLLSETEQLRKIYPLESRVFPK------ 110 Query: 364 NVSTQLKEKYNDKMTKMQRFDDEA 435 T +KE N++ + +DD+A Sbjct: 111 --PTIVKEITNERTKRYTFYDDDA 132
>CAPS_CAEEL (Q23658) Calcium-dependent secretion activator (Uncoordinated| protein 31) Length = 1260 Score = 29.3 bits (64), Expect = 9.1 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 4/84 (4%) Frame = +1 Query: 241 KYKQYHQKSPQYDQILKKNEQMYALLAICLSLCPQNKLIDENVSTQLKEKYNDKMTKMQR 420 K +Q K+ + ++ KKN QMY LA C++ + + Q+K + +R Sbjct: 43 KEEQERMKAEREEEDHKKNLQMYMFLARCIAYPFNGQQTGDMARRQMKVNKQELARIRER 102 Query: 421 F----DDEAYAAYDELFSYACPKF 480 F E A DE F+ A + Sbjct: 103 FTLFLKGETNIAADEAFTKAIQSY 126
>YM58_YEAST (Q03695) Hypothetical 35.0 kDa protein in PFK2-HFA1 intergenic| region Length = 313 Score = 29.3 bits (64), Expect = 9.1 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Frame = +1 Query: 88 LAPINLNQQGVYTIVIGSHISTIYH-YGFANLMMRRYVDATKEFNKILLYI------IKY 246 L+P N N Q + SHI +++H + + +V TK+ +I Y +KY Sbjct: 120 LSPSNNNHQFIARRFSDSHIPSLHHRQQQQKVTTKNFVQPTKDIQRIASYAADSDQRVKY 179 Query: 247 -KQYHQKSP 270 YHQ +P Sbjct: 180 LPNYHQSAP 188 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,140,221 Number of Sequences: 219361 Number of extensions: 1905289 Number of successful extensions: 5296 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 5133 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5289 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
