ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags6k13 |
|---|---|
| Clone Library Name | barley_pub |
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 108 bits (269), Expect = 1e-23 Identities = 60/158 (37%), Positives = 83/158 (52%), Gaps = 10/158 (6%) Frame = +3 Query: 69 LQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDT-----PDYTIFV 233 L Y FV+F+S AAAER L +N M+P ++LNWA+ G + + P+++IFV Sbjct: 127 LISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFV 186 Query: 234 GDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNG 413 GDL D L TFR YPS AK++ D +T S+ YGFV+F EQ A+ M G Sbjct: 187 GDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQG 246 Query: 414 MPCSSRPMRIGPAANRKTTGVXER-----VPIXNTNTQ 512 C RP+RI A+ + + VP +N Q Sbjct: 247 YLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQ 284
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 105 bits (261), Expect = 1e-22 Identities = 57/148 (38%), Positives = 82/148 (55%), Gaps = 4/148 (2%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDT----PDYTIF 230 G GY FVEFAS A + + N + +P ++LNWAS G R+ + +Y+IF Sbjct: 131 GMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIF 189 Query: 231 VGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMN 410 VGDL+ +V ++ + F Y S K AK++TD T S+GYGFV+F D +Q A+ EM Sbjct: 190 VGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQ 249 Query: 411 GMPCSSRPMRIGPAANRKTTGVXERVPI 494 G C RP+R+G A + V V + Sbjct: 250 GQICGDRPIRVGLATPKSKAHVFSPVNV 277 Score = 32.0 bits (71), Expect = 1.2 Identities = 22/85 (25%), Positives = 42/85 (49%) Frame = +3 Query: 207 DTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQ 386 DT + T+FVG L+ V++ L+ F+ ++ + K+ KG GFV+F + Sbjct: 299 DTANSTVFVGGLSKFVSEEELKYLFQ-NFGEIVYVKIPP------GKGCGFVQFVNRQSA 351 Query: 387 ARAMTEMNGMPCSSRPMRIGPAANR 461 A+ ++ G P + +R+ N+ Sbjct: 352 EIAINQLQGYPLGNSRIRLSWGRNQ 376
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 91.3 bits (225), Expect = 2e-18 Identities = 60/165 (36%), Positives = 87/165 (52%), Gaps = 9/165 (5%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNV-ELAYRLNWASAGEKRDDTP--------DYT 224 QGY FV+F S A L NG ++PN +LNWA++ + + + Sbjct: 106 QGYCFVDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCS 164 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 IFVGDLA +VT+ L E F Y S AK+V D++T SKGYGFVKF + EQ A++E Sbjct: 165 IFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSE 224 Query: 405 MNGMPCSSRPMRIGPAANRKTTGVXERVPIXNTNTQGAXXDNDXN 539 M G+ + R +++GP T+G + V N + + N+ N Sbjct: 225 MQGVFLNGRAIKVGP-----TSGQQQHVSGNNDYNRSSSSLNNEN 264 Score = 33.9 bits (76), Expect = 0.33 Identities = 23/99 (23%), Positives = 48/99 (48%) Frame = +3 Query: 207 DTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQ 386 D + T+F+G L++ VT+ L+ F+ + ++ K+ K GFV++ D Sbjct: 309 DPNNTTVFIGGLSSLVTEDELRAYFQP-FGTIVYVKIPVGKCC------GFVQYVDRLSA 361 Query: 387 ARAMTEMNGMPCSSRPMRIGPAANRKTTGVXERVPIXNT 503 A+ M G P ++ +R+ + K T + ++ + N+ Sbjct: 362 EAAIAGMQGFPIANSRVRLSWGRSAKQTALLQQAMLSNS 400
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 89.0 bits (219), Expect = 9e-18 Identities = 52/144 (36%), Positives = 76/144 (52%), Gaps = 15/144 (10%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQ------------TFNGQMMPNVELAYRLNWASAGEKRDD--- 209 GY FVEF + A+ L T N Q P + +RLNWAS + Sbjct: 129 GYCFVEFETQKDAKFALSLNATPLPNFYSPTTNSQTNPTFKRTFRLNWASGATLQSSIPS 188 Query: 210 TPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQA 389 TP++++FVGDL+ T+ L F+ + SVK +V+TD +T S+ +GFV+FGD E+ Sbjct: 189 TPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERR 248 Query: 390 RAMTEMNGMPCSSRPMRIGPAANR 461 RA+ EM+G R +R+ A R Sbjct: 249 RALIEMSGKWFQGRALRVAYATPR 272
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 85.1 bits (209), Expect = 1e-16 Identities = 53/161 (32%), Positives = 75/161 (46%), Gaps = 3/161 (1%) Frame = +3 Query: 78 YGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADVT 257 Y FVE+ A LQT NG+ + N + ++NWA ++ + +FVGDL +V Sbjct: 116 YAFVEYHQSHDANIALQTLNGKQIENNIV--KINWAFQSQQSSSDDTFNLFVGDLNVNVD 173 Query: 258 DYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPM 437 D L+ F+ +PS V+ D T S+GYGFV F + AM M G + RP+ Sbjct: 174 DETLRNAFK-DFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 232 Query: 438 RIGPAA---NRKTTGVXERVPIXNTNTQGAXXDNDXNNTTI 551 RI AA N +R N N G N+ NN + Sbjct: 233 RINWAAKRDNNNNNNYQQRRNYGNNNRGGFRQYNNNNNNNM 273 Score = 33.9 bits (76), Expect = 0.33 Identities = 19/49 (38%), Positives = 27/49 (55%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDD 209 G +GYGFV F S A+ + + GQ + L R+NWA+ KRD+ Sbjct: 199 GSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL--RINWAA---KRDN 242
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 71.6 bits (174), Expect = 1e-12 Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 2/130 (1%) Frame = +3 Query: 78 YGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWAS--AGEKRDDTPDYTIFVGDLAAD 251 Y FVEF H A L NG+ + E+ ++NWA+ + +K+D + + +FVGDL+ + Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEV--KVNWATTPSSQKKDTSNHFHVFVGDLSPE 124 Query: 252 VTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSR 431 +T ++ F + + A+VV D T +SKGYGFV F + + A+ M G R Sbjct: 125 ITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 183 Query: 432 PMRIGPAANR 461 +R A + Sbjct: 184 QIRTNWATRK 193 Score = 46.6 bits (109), Expect = 5e-05 Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 20/137 (14%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWAS----AGEKRDDT------ 212 G+ +GYGFV F + AE + GQ + ++ R NWA+ A + +T Sbjct: 152 GKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI--RTNWATRKPPAPKSTQETNTKQLR 209 Query: 213 ----------PDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFV 362 + T++ G +A+ +TD ++++TF + + +V + KGY FV Sbjct: 210 FEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFS-PFGQIMEIRVFPE------KGYSFV 262 Query: 363 KFGDPTEQARAMTEMNG 413 +F A A+ +NG Sbjct: 263 RFSTHESAAHAIVSVNG 279 Score = 37.7 bits (86), Expect = 0.023 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 19/108 (17%) Frame = +3 Query: 204 DDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMR-------------- 341 DD T++VG+L+ DVT+ ++ + F P K K++T++ R Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGP-CKSCKMITEQPDSRRVNSSVGFSVLQHT 62 Query: 342 -SKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIG----PAANRKTT 470 + Y FV+F + + A A+ MNG + +++ P++ +K T Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT 110
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 71.6 bits (174), Expect = 1e-12 Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 2/130 (1%) Frame = +3 Query: 78 YGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWAS--AGEKRDDTPDYTIFVGDLAAD 251 Y FVEF H A L NG+ + E+ ++NWA+ + +K+D + + +FVGDL+ + Sbjct: 50 YCFVEFYEHRDAAAALAAMNGRKILGKEV--KVNWATTPSSQKKDTSNHFHVFVGDLSPE 107 Query: 252 VTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSR 431 +T ++ F + + A+VV D T +SKGYGFV F + + A+ M G R Sbjct: 108 ITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 166 Query: 432 PMRIGPAANR 461 +R A + Sbjct: 167 QIRTNWATRK 176 Score = 45.8 bits (107), Expect = 8e-05 Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 20/137 (14%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGE--------------- 197 G+ +GYGFV F + AE + GQ + ++ R NWA+ Sbjct: 135 GKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI--RTNWATRKPPAPKSTQENNTKQLR 192 Query: 198 -----KRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFV 362 + + T++ G +A+ +TD ++++TF + + +V + KGY FV Sbjct: 193 FEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFS-PFGQIMEIRVFPE------KGYSFV 245 Query: 363 KFGDPTEQARAMTEMNG 413 +F A A+ +NG Sbjct: 246 RFSTHESAAHAIVSVNG 262 Score = 41.6 bits (96), Expect = 0.002 Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 4/93 (4%) Frame = +3 Query: 204 DDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTE 383 DD T++VG+L+ DVT+ ++ + F P K K++T+ + + Y FV+F + + Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGP-CKSCKMITEHTS--NDPYCFVEFYEHRD 60 Query: 384 QARAMTEMNGMPCSSRPMRIG----PAANRKTT 470 A A+ MNG + +++ P++ +K T Sbjct: 61 AAAALAAMNGRKILGKEVKVNWATTPSSQKKDT 93
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 69.3 bits (168), Expect = 7e-12 Identities = 45/137 (32%), Positives = 68/137 (49%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDL 242 GQ QGYGFVEF S A+ ++ N M+ R+N ASA K D IF+G+L Sbjct: 51 GQHQGYGFVEFLSEEDADYAIKIMN--MIKLYGKPIRVNKASAHNKNLDV-GANIFIGNL 107 Query: 243 AADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPC 422 ++ + +L +TF ++ K++ D T SKGY F+ F A+ MNG Sbjct: 108 DPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL 167 Query: 423 SSRPMRIGPAANRKTTG 473 +RP+ + A + + G Sbjct: 168 CNRPITVSYAFKKDSKG 184 Score = 45.1 bits (105), Expect = 1e-04 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 1/110 (0%) Frame = +3 Query: 186 SAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVK 365 +AG + D T++VG L V++ +L E F P V + D++T + +GYGFV+ Sbjct: 2 AAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN-THMPKDRVTGQHQGYGFVE 60 Query: 366 FGDPTEQARAMTEMNGMPCSSRPMRIGPA-ANRKTTGVXERVPIXNTNTQ 512 F + A+ MN + +P+R+ A A+ K V + I N + + Sbjct: 61 FLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPE 110
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 68.6 bits (166), Expect = 1e-11 Identities = 44/135 (32%), Positives = 75/135 (55%), Gaps = 5/135 (3%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDD----TPDYT-IFVG 236 +GYGFV F +H AA R +QT NG M+ N + ++ S E+ + ++T +++ Sbjct: 138 RGYGFVHFETHEAANRAIQTMNG-MLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIK 196 Query: 237 DLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM 416 + D+ D L+E F + + KV+ D + RS+G+GFV +G+ E +A++EMNG Sbjct: 197 NFGEDMDDKRLREIFSA-FGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMNGK 254 Query: 417 PCSSRPMRIGPAANR 461 + R + +G A R Sbjct: 255 EVNGRMIYVGRAQKR 269 Score = 60.8 bits (146), Expect = 2e-09 Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 19/153 (12%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPD-------- 218 G+ +G+GFV + +H A++ + NG+ E+ R+ + +KR + Sbjct: 228 GRSRGFGFVNYGNHEEAQKAVSEMNGK-----EVNGRMIYVGRAQKRIERQSELKRKFEQ 282 Query: 219 -----------YTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVK 365 ++V +L + D L++ F + Y ++ AKV+T+ SKG+GFV Sbjct: 283 IKQERINRYQGVNLYVKNLDDGIDDDRLRKEF-LPYGTITSAKVMTEGG--HSKGFGFVC 339 Query: 366 FGDPTEQARAMTEMNGMPCSSRPMRIGPAANRK 464 F P E +A+TEMNG S++P+ + A ++ Sbjct: 340 FSSPEEATKAVTEMNGRIVSTKPLYVALAQRKE 372 Score = 52.0 bits (123), Expect = 1e-06 Identities = 36/129 (27%), Positives = 62/129 (48%) Frame = +3 Query: 78 YGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADVT 257 Y ++ F A AER L T N +++ + R+ W+ + +F+ +L + Sbjct: 54 YAYINFQQPADAERALDTMNFEVIKGRPI--RIMWSQRDPGLRKSGVGNVFIKNLDESID 111 Query: 258 DYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPM 437 + L +TF + ++ KVV D+ S+GYGFV F RA+ MNGM + R + Sbjct: 112 NKALYDTFSA-FGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGMLLNDRKV 168 Query: 438 RIGPAANRK 464 +G +R+ Sbjct: 169 FVGHFKSRR 177 Score = 50.4 bits (119), Expect = 3e-06 Identities = 28/77 (36%), Positives = 40/77 (51%) Frame = +3 Query: 213 PDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQAR 392 P ++++GDL DVT+ ML E F P + +V D T RS Y ++ F P + R Sbjct: 9 PLASLYIGDLHPDVTEAMLYEKFSPAGP-IMSIRVCRDIATRRSLSYAYINFQQPADAER 67 Query: 393 AMTEMNGMPCSSRPMRI 443 A+ MN RP+RI Sbjct: 68 ALDTMNFEVIKGRPIRI 84
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 67.4 bits (163), Expect = 3e-11 Identities = 44/135 (32%), Positives = 74/135 (54%), Gaps = 5/135 (3%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDD----TPDYT-IFVG 236 +GYGFV F + AA R +QT NG M+ N + ++ S E+ + ++T +++ Sbjct: 138 RGYGFVHFETQEAANRAIQTMNG-MLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIK 196 Query: 237 DLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM 416 + D+ D L+E F + + KV+ D + RS+G+GFV +G+ E +A+TEMNG Sbjct: 197 NFGEDMDDKRLKEIFSA-FGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGK 254 Query: 417 PCSSRPMRIGPAANR 461 + R + +G A R Sbjct: 255 EVNGRMVYVGRAQKR 269 Score = 57.8 bits (138), Expect = 2e-08 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 19/153 (12%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPD-------- 218 G+ +G+GFV + +H A++ + NG+ E+ R+ + +KR + Sbjct: 228 GRSRGFGFVNYGNHEEAQKAVTEMNGK-----EVNGRMVYVGRAQKRIERQGELKRKFEQ 282 Query: 219 -----------YTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVK 365 ++V +L + D L++ F Y ++ KV+T+ SKG+GFV Sbjct: 283 IKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSP-YGTITSTKVMTEGG--HSKGFGFVC 339 Query: 366 FGDPTEQARAMTEMNGMPCSSRPMRIGPAANRK 464 F P E +A+TEMNG S++P+ + A ++ Sbjct: 340 FSSPEEATKAVTEMNGRIVSTKPLYVALAQRKE 372 Score = 54.3 bits (129), Expect = 2e-07 Identities = 37/130 (28%), Positives = 62/130 (47%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADV 254 GY ++ F A AER L T N +++ + R+ W+ + +F+ +L + Sbjct: 53 GYAYINFQQPADAERALDTMNFEVIKGRPI--RIMWSQRDPGLRKSGVGNVFIKNLDDSI 110 Query: 255 TDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 + L +TF + + KVV D+ S+GYGFV F RA+ MNGM + R Sbjct: 111 DNKALYDTFSA-FGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRK 167 Query: 435 MRIGPAANRK 464 + +G +R+ Sbjct: 168 VFVGHFKSRR 177 Score = 53.9 bits (128), Expect = 3e-07 Identities = 30/81 (37%), Positives = 43/81 (53%) Frame = +3 Query: 201 RDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPT 380 R + P ++++GDL DVT+ ML E F P + +V D T RS GY ++ F P Sbjct: 5 RAEYPLASLYIGDLHPDVTEAMLYEKFSPAGP-IMSIRVCRDIATRRSLGYAYINFQQPA 63 Query: 381 EQARAMTEMNGMPCSSRPMRI 443 + RA+ MN RP+RI Sbjct: 64 DAERALDTMNFEVIKGRPIRI 84
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 67.0 bits (162), Expect = 3e-11 Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 5/135 (3%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDD----TPDYT-IFVG 236 +GYGFV F + AA R +QT NG ++ N + ++ S E+ + ++T +++ Sbjct: 138 RGYGFVHFETQEAANRAIQTMNGMLL-NDRKVFVGHFKSRRERELEYGAKVMEFTNVYIK 196 Query: 237 DLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM 416 + D+ D L+E F + + KV+ D T RS+G+GFV +G+ E +A++EMNG Sbjct: 197 NFGEDMDDKRLREIFSA-FGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGK 254 Query: 417 PCSSRPMRIGPAANR 461 + R + +G A R Sbjct: 255 EVNGRMIYVGRAQKR 269 Score = 59.7 bits (143), Expect = 6e-09 Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 19/153 (12%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPD-------- 218 G+ +G+GFV + +H A++ + NG+ E+ R+ + +KR + Sbjct: 228 GRSRGFGFVNYGNHEEAQKAVSEMNGK-----EVNGRMIYVGRAQKRIERQGELKRKFEQ 282 Query: 219 -----------YTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVK 365 ++V +L + D L++ F Y ++ AKV+T+ SKG+GFV Sbjct: 283 IKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSP-YGTITSAKVMTEGG--HSKGFGFVC 339 Query: 366 FGDPTEQARAMTEMNGMPCSSRPMRIGPAANRK 464 F P E +A+TEMNG S++P+ + A ++ Sbjct: 340 FSSPEEATKAVTEMNGRIVSTKPLYVALAQRKE 372 Score = 54.7 bits (130), Expect = 2e-07 Identities = 37/130 (28%), Positives = 63/130 (48%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADV 254 GY ++ F A AER L T N +++ + R+ W+ + +F+ +L + Sbjct: 53 GYAYINFQQPADAERALDTMNFEVIKGRPI--RIMWSQRDPGLRKSGVGNVFIKNLDESI 110 Query: 255 TDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 + L +TF + ++ KVV D+ S+GYGFV F RA+ MNGM + R Sbjct: 111 DNKALYDTFSA-FGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRK 167 Query: 435 MRIGPAANRK 464 + +G +R+ Sbjct: 168 VFVGHFKSRR 177 Score = 53.1 bits (126), Expect = 5e-07 Identities = 30/77 (38%), Positives = 41/77 (53%) Frame = +3 Query: 213 PDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQAR 392 P +++VGDL DVT+ ML E F P + +V D T RS GY ++ F P + R Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGP-IMSIRVCRDIATRRSLGYAYINFQQPADAER 67 Query: 393 AMTEMNGMPCSSRPMRI 443 A+ MN RP+RI Sbjct: 68 ALDTMNFEVIKGRPIRI 84
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 64.3 bits (155), Expect = 2e-10 Identities = 39/136 (28%), Positives = 74/136 (54%), Gaps = 6/136 (4%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVEL------AYRLNWASAGEKRDDTPDYTIFV 233 +GYGFV F +H AAER ++ NG ++ ++ + + A G + + P+ +++ Sbjct: 138 KGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN--VYI 195 Query: 234 GDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNG 413 + D+ D L++ F P++ KV+TD+ + +SKG+GFV F + +A+ EMNG Sbjct: 196 KNFGEDMDDERLKDLFGKFGPAL-SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253 Query: 414 MPCSSRPMRIGPAANR 461 + + + +G A + Sbjct: 254 KELNGKQIYVGRAQKK 269 Score = 59.7 bits (143), Expect = 6e-09 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 14/148 (9%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMM-----------PNVELAYRLNWASAGEKRDD 209 G+ +G+GFV F H A++ + NG+ + VE L K+D Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDR 287 Query: 210 TPDYTI---FVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPT 380 Y + +V +L + D L++ F + ++ AKV+ + RSKG+GFV F P Sbjct: 288 ITRYQVVNLYVKNLDDGIDDERLRKAFSP-FGTITSAKVMMEGG--RSKGFGFVCFSSPE 344 Query: 381 EQARAMTEMNGMPCSSRPMRIGPAANRK 464 E +A+TEMNG +++P+ + A ++ Sbjct: 345 EATKAVTEMNGRIVATKPLYVALAQRKE 372 Score = 48.5 bits (114), Expect = 1e-05 Identities = 37/129 (28%), Positives = 58/129 (44%) Frame = +3 Query: 78 YGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADVT 257 Y +V F AE L T N ++ + R+ W+ + IFV +L + Sbjct: 54 YAYVNFQHTKDAEHALDTMNFDVIKGKPV--RIMWSQRDPSLRKSGVGNIFVKNLDKSIN 111 Query: 258 DYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPM 437 + L +T + ++ VV D+ SKGYGFV F RA+ +MNGM + R + Sbjct: 112 NKALYDTVSA-FGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGRKV 168 Query: 438 RIGPAANRK 464 +G +RK Sbjct: 169 FVGQFKSRK 177 Score = 43.9 bits (102), Expect = 3e-04 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%) Frame = +3 Query: 210 TPDY---TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPT 380 TP Y +++VGDL DVT+ ML E F P + ++ D +T S Y +V F Sbjct: 5 TPSYPTASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRICRDLITSGSSNYAYVNFQHTK 63 Query: 381 EQARAMTEMNGMPCSSRPMRI 443 + A+ MN +P+RI Sbjct: 64 DAEHALDTMNFDVIKGKPVRI 84
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 63.5 bits (153), Expect = 4e-10 Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 13/141 (9%) Frame = +3 Query: 78 YGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWAS--AGEKRDDTPD----------- 218 Y FVEF H A L NG+ + E+ ++NWA+ + +K+D + Sbjct: 48 YCFVEFHEHRHAAAALAAMNGRKIMGKEV--KVNWATTPSSQKKDTSSSTVVSTQRSQDH 105 Query: 219 YTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 + +FVGDL+ ++T ++ F + + A+VV D T +SKGYGFV F + + A+ Sbjct: 106 FHVFVGDLSPEITTEDIKAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAI 164 Query: 399 TEMNGMPCSSRPMRIGPAANR 461 +M G R +R A + Sbjct: 165 QQMGGQWLGGRQIRTNWATRK 185 Score = 47.0 bits (110), Expect = 4e-05 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 20/137 (14%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWA--------SAGEKRDDTPD 218 G+ +GYGFV F + AE +Q GQ + ++ R NWA S E Sbjct: 144 GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI--RTNWATRKPPAPKSTYESNTKQLS 201 Query: 219 Y------------TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFV 362 Y T++ G + + +T+ ++++TF + + +V D KGY FV Sbjct: 202 YDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFS-PFGQIMEIRVFPD------KGYSFV 254 Query: 363 KFGDPTEQARAMTEMNG 413 +F A A+ +NG Sbjct: 255 RFSSHESAAHAIVSVNG 271 Score = 40.0 bits (92), Expect = 0.005 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 4/93 (4%) Frame = +3 Query: 204 DDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTE 383 +D T++VG+L+ DVT+ ++ + F P K K++ D T + Y FV+F + Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGP-CKNCKMIMD--TAGNDPYCFVEFHEHRH 58 Query: 384 QARAMTEMNGMPCSSRPMRIG----PAANRKTT 470 A A+ MNG + +++ P++ +K T Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWATTPSSQKKDT 91
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 62.8 bits (151), Expect = 7e-10 Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 13/141 (9%) Frame = +3 Query: 78 YGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWAS--AGEKRDDTPD----------- 218 Y FVEF H A L NG+ + E+ ++NWA+ + +K+D + Sbjct: 48 YCFVEFHEHRHAAAALAAMNGRKIMGKEV--KVNWATTPSSQKKDTSSSTVVSTQRSQNH 105 Query: 219 YTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 + +FVGDL+ +T ++ F + + A+VV D T +SKGYGFV F + + A+ Sbjct: 106 FHVFVGDLSPQITTEDIKAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAI 164 Query: 399 TEMNGMPCSSRPMRIGPAANR 461 +M G R +R A + Sbjct: 165 QQMGGQWLGGRQIRTNWATRK 185 Score = 47.0 bits (110), Expect = 4e-05 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 20/137 (14%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWA--------SAGEKRDDTPD 218 G+ +GYGFV F + AE +Q GQ + ++ R NWA S E Sbjct: 144 GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI--RTNWATRKPPAPKSTYESNTKQLS 201 Query: 219 Y------------TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFV 362 Y T++ G + + +T+ ++++TF + + +V D KGY FV Sbjct: 202 YDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFS-PFGQIMEIRVFPD------KGYSFV 254 Query: 363 KFGDPTEQARAMTEMNG 413 +F A A+ +NG Sbjct: 255 RFNSHESAAHAIVSVNG 271 Score = 40.0 bits (92), Expect = 0.005 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 4/93 (4%) Frame = +3 Query: 204 DDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTE 383 +D T++VG+L+ DVT+ ++ + F P K K++ D T + Y FV+F + Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGP-CKNCKMIMD--TAGNDPYCFVEFHEHRH 58 Query: 384 QARAMTEMNGMPCSSRPMRIG----PAANRKTT 470 A A+ MNG + +++ P++ +K T Sbjct: 59 AAAALAAMNGRKIMGKEVKVNWATTPSSQKKDT 91
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 62.8 bits (151), Expect = 7e-10 Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 4/134 (2%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKR----DDTPDYTIFVGD 239 +G+GFV ++ AE+ ++ NG M +L +R D P ++VG+ Sbjct: 96 RGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGN 155 Query: 240 LAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMP 419 L DV L++ F H V A+VV+D+ T RS+G+GFV +E A+ ++G Sbjct: 156 LPWDVDTSRLEQLFSEH-GKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQT 214 Query: 420 CSSRPMRIGPAANR 461 R +R+ A R Sbjct: 215 LDGRAVRVNVAEER 228 Score = 42.0 bits (97), Expect = 0.001 Identities = 30/89 (33%), Positives = 44/89 (49%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 +FVG+L DV L F V+ A+V+ ++ T RS+G+GFV E +A+ Sbjct: 57 LFVGNLPYDVDSEKLAGIFDAA-GVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 115 Query: 405 MNGMPCSSRPMRIGPAANRKTTGVXERVP 491 +NG R + + AA R G ER P Sbjct: 116 LNGYDMDGRQLTVNKAAPR---GSPERAP 141
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 62.8 bits (151), Expect = 7e-10 Identities = 40/137 (29%), Positives = 71/137 (51%), Gaps = 7/137 (5%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTF-----NGQMMPNVELAYRLNWASAGEKRDDT--PDYTIF 230 +G+GFV ++ A++ ++ + NG+++ + A R S E+ T P Y I+ Sbjct: 138 RGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPR---GSRPERAPRTFQPTYRIY 194 Query: 231 VGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMN 410 VG++ D+ D L++ F H V A+VV D+ + RS+G+GFV E + A+ ++ Sbjct: 195 VGNIPWDIDDARLEQVFSEH-GKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLD 253 Query: 411 GMPCSSRPMRIGPAANR 461 G R +R+ A R Sbjct: 254 GQTLDGRTIRVNAAEER 270 Score = 37.7 bits (86), Expect = 0.023 Identities = 25/89 (28%), Positives = 46/89 (51%) Frame = +3 Query: 195 EKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGD 374 E ++ + D +FVG+L D+ L + F+ V+ A+V+ ++ T RS+G+GFV Sbjct: 89 EYQEPSEDAKLFVGNLPYDIDSEGLAQLFQ-QAGVVEIAEVIYNRETDRSRGFGFVTMST 147 Query: 375 PTEQARAMTEMNGMPCSSRPMRIGPAANR 461 E +A+ + + R + + AA R Sbjct: 148 VEEADKAVELYSQYDLNGRLLTVNKAAPR 176
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 62.4 bits (150), Expect = 9e-10 Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 5/137 (3%) Frame = +3 Query: 66 QLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTP-----DYTIF 230 Q +G+GFV ++ AE+ ++ +N + N L A GE+ + P Y I+ Sbjct: 175 QSRGFGFVTMSTVEEAEKAVEMYNRYDV-NGRLLTVNKAARRGERPERPPRTFEQSYRIY 233 Query: 231 VGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMN 410 VG++ + D L++ F H V A+VV D+ T RS+G+GFV E + A+ ++ Sbjct: 234 VGNIPWGIDDARLEQLFSEH-GKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLD 292 Query: 411 GMPCSSRPMRIGPAANR 461 G R +R+ A +R Sbjct: 293 GQSLDGRTIRVNVAEDR 309 Score = 37.4 bits (85), Expect = 0.029 Identities = 26/89 (29%), Positives = 43/89 (48%) Frame = +3 Query: 195 EKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGD 374 E ++ D +FVG+L DV L F V+ A+V+ ++ T +S+G+GFV Sbjct: 128 EFQEPPEDAKLFVGNLPYDVDSEGLARLFE-QAGVVEIAEVIYNRDTDQSRGFGFVTMST 186 Query: 375 PTEQARAMTEMNGMPCSSRPMRIGPAANR 461 E +A+ N + R + + AA R Sbjct: 187 VEEAEKAVEMYNRYDVNGRLLTVNKAARR 215
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 62.4 bits (150), Expect = 9e-10 Identities = 42/146 (28%), Positives = 75/146 (51%), Gaps = 4/146 (2%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYT----IF 230 GQ +GYGFV++A+ +A++ ++ NG ++ + ++ + ++RD T + T ++ Sbjct: 161 GQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQV--YVGPFLRRQERDSTANKTKFTNVY 218 Query: 231 VGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMN 410 V +LA TD L+ F Y + A V+ D +SKG+GFV F + + ARA+ +N Sbjct: 219 VKNLAESTTDDDLKNAFG-EYGKITSAVVMKDG-EGKSKGFGFVNFENADDAARAVESLN 276 Query: 411 GMPCSSRPMRIGPAANRKTTGVXERV 488 G + +G A + RV Sbjct: 277 GHKFDDKEWYVGRAQKKSERETELRV 302 Score = 56.2 bits (134), Expect = 6e-08 Identities = 31/86 (36%), Positives = 49/86 (56%) Frame = +3 Query: 186 SAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVK 365 S G + +++VGDL +VTD L + F +V +V D +T RS GYG+V Sbjct: 25 SGGATATQFGNTSLYVGDLDFNVTDSQLFDAFG-QMGTVVTVRVCRDLVTRRSLGYGYVN 83 Query: 366 FGDPTEQARAMTEMNGMPCSSRPMRI 443 F +P + ARA+ E+N +P +P+R+ Sbjct: 84 FTNPQDAARAIQELNYIPLYGKPIRV 109 Score = 55.1 bits (131), Expect = 1e-07 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 17/151 (11%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVE-----------------LAYRLNWASA 191 G+ +G+GFV F + A R +++ NG + E + Y N A Sbjct: 252 GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEA 311 Query: 192 GEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFG 371 +K + ++V +L ++D L+E F + +V +KV+ D SKG GFV F Sbjct: 312 ADKFQSS---NLYVKNLDPSISDEKLKEIFSP-FGTVTSSKVMRDP-NGTSKGSGFVAFA 366 Query: 372 DPTEQARAMTEMNGMPCSSRPMRIGPAANRK 464 P E AM++++G S+P+ + A ++ Sbjct: 367 TPEEATEAMSQLSGKMIESKPLYVAIAQRKE 397 Score = 52.8 bits (125), Expect = 7e-07 Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 4/160 (2%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADV 254 GYG+V F + A R +Q N +P R+ ++ + IF+ +L + Sbjct: 78 GYGYVNFTNPQDAARAIQELN--YIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESI 135 Query: 255 TDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 L +TF + ++ KV D + +SKGYGFV++ + +A+ ++NGM + + Sbjct: 136 DHKALHDTFS-SFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQ 193 Query: 435 MRIGPAANRK----TTGVXERVPIXNTNTQGAXXDNDXNN 542 + +GP R+ T + + N + D+D N Sbjct: 194 VYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKN 233
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 62.0 bits (149), Expect = 1e-09 Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 5/135 (3%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDD----TPDYT-IFVG 236 +GYGFV F + AAER + NG M+ N + + S E+ + ++T +++ Sbjct: 138 KGYGFVHFETQEAAERAIDKMNG-MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 196 Query: 237 DLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM 416 + D+ D L+E F + P++ KV+TD +SKG+GFV F + +A+ EMNG Sbjct: 197 NFGDDMNDERLKEMFGKYGPAL-SVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEMNGK 254 Query: 417 PCSSRPMRIGPAANR 461 + + M +G A + Sbjct: 255 DMNGKSMFVGRAQKK 269 Score = 60.5 bits (145), Expect = 3e-09 Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 14/148 (9%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMM-----------PNVELAYRLNWASAGEKRDD 209 G+ +G+GFV F H A++ + NG+ M VE L K+D Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDR 287 Query: 210 TPDY---TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPT 380 Y ++V +L + D L++ F + + ++ AKV+ + RSKG+GFV F P Sbjct: 288 ITRYQGVNLYVKNLDDGIDDERLRKEF-LPFGTITSAKVMMEGG--RSKGFGFVCFSSPE 344 Query: 381 EQARAMTEMNGMPCSSRPMRIGPAANRK 464 E +A+TEMNG +++P+ + A ++ Sbjct: 345 EATKAVTEMNGRIVATKPLYVALAQRKE 372 Score = 58.5 bits (140), Expect = 1e-08 Identities = 41/130 (31%), Positives = 63/130 (48%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADV 254 GY +V F A AER L T N ++ + R+ W+ + IF+ +L + Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGRPV--RIMWSQRDPSLRKSGVGNIFIKNLDKSI 110 Query: 255 TDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 + L +TF + ++ KVV D+ SKGYGFV F RA+ +MNGM + R Sbjct: 111 DNKALYDTFSA-FGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRK 167 Query: 435 MRIGPAANRK 464 + +G +RK Sbjct: 168 VFVGRFKSRK 177 Score = 54.7 bits (130), Expect = 2e-07 Identities = 31/77 (40%), Positives = 42/77 (54%) Frame = +3 Query: 213 PDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQAR 392 P +++VGDL DVT+ ML E F P + +V D +T RS GY +V F P + R Sbjct: 9 PMASLYVGDLHQDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67 Query: 393 AMTEMNGMPCSSRPMRI 443 A+ MN RP+RI Sbjct: 68 ALDTMNFDVIKGRPVRI 84
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 61.6 bits (148), Expect = 1e-09 Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 5/135 (3%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDD----TPDYT-IFVG 236 +GYGFV F + AAER ++ NG M+ N + + S E+ + ++T +++ Sbjct: 138 KGYGFVHFETQEAAERAIEKMNG-MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 196 Query: 237 DLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM 416 + D+ D L+E F P++ KV+TD+ + +SKG+GFV F + +A+ EMNG Sbjct: 197 NFGEDMDDERLKELFGKFGPAL-SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGK 254 Query: 417 PCSSRPMRIGPAANR 461 + + + +G A + Sbjct: 255 ELNGKQIYVGRAQKK 269 Score = 58.9 bits (141), Expect = 9e-09 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 14/148 (9%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMM-----------PNVELAYRLNWASAGEKRDD 209 G+ +G+GFV F H A++ + NG+ + VE L K+D Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDR 287 Query: 210 TPDY---TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPT 380 Y ++V +L + D L++ F + ++ AKV+ + RSKG+GFV F P Sbjct: 288 ITRYQGVNLYVKNLDDGIDDERLRKEFSP-FGTITSAKVMMEGG--RSKGFGFVCFSSPE 344 Query: 381 EQARAMTEMNGMPCSSRPMRIGPAANRK 464 E +A+TEMNG +++P+ + A ++ Sbjct: 345 EATKAVTEMNGRIVATKPLYVALAQRKE 372 Score = 58.9 bits (141), Expect = 9e-09 Identities = 41/130 (31%), Positives = 63/130 (48%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADV 254 GY +V F A AER L T N ++ + R+ W+ + IF+ +L + Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPV--RIMWSQRDPSLRKSGVGNIFIKNLDKSI 110 Query: 255 TDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 + L +TF + ++ KVV D+ SKGYGFV F RA+ +MNGM + R Sbjct: 111 DNKALYDTFSA-FGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167 Query: 435 MRIGPAANRK 464 + +G +RK Sbjct: 168 VFVGRFKSRK 177 Score = 53.5 bits (127), Expect = 4e-07 Identities = 30/77 (38%), Positives = 42/77 (54%) Frame = +3 Query: 213 PDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQAR 392 P +++VGDL DVT+ ML E F P + +V D +T RS GY +V F P + R Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67 Query: 393 AMTEMNGMPCSSRPMRI 443 A+ MN +P+RI Sbjct: 68 ALDTMNFDVIKGKPVRI 84
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 61.6 bits (148), Expect = 1e-09 Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 5/135 (3%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDD----TPDYT-IFVG 236 +GYGFV F + AAER ++ NG M+ N + + S E+ + ++T +++ Sbjct: 138 KGYGFVHFETQEAAERAIEKMNG-MLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIK 196 Query: 237 DLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM 416 + D+ D L+E F P++ KV+TD+ + +SKG+GFV F + +A+ EMNG Sbjct: 197 NFGEDMDDERLKELFGKFGPAL-SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGK 254 Query: 417 PCSSRPMRIGPAANR 461 + + + +G A + Sbjct: 255 ELNGKQIYVGRAQKK 269 Score = 58.9 bits (141), Expect = 9e-09 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 14/148 (9%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMM-----------PNVELAYRLNWASAGEKRDD 209 G+ +G+GFV F H A++ + NG+ + VE L K+D Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDR 287 Query: 210 TPDY---TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPT 380 Y ++V +L + D L++ F + ++ AKV+ + RSKG+GFV F P Sbjct: 288 ITRYQGVNLYVKNLDDGIDDERLRKEFSP-FGTITSAKVMMEGG--RSKGFGFVCFSSPE 344 Query: 381 EQARAMTEMNGMPCSSRPMRIGPAANRK 464 E +A+TEMNG +++P+ + A ++ Sbjct: 345 EATKAVTEMNGRIVATKPLYVALAQRKE 372 Score = 57.4 bits (137), Expect = 3e-08 Identities = 40/130 (30%), Positives = 63/130 (48%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADV 254 GY +V F A AER L T N ++ + R+ W+ + IF+ +L + Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPV--RIMWSQRDPSLRKSGVGNIFIKNLDKSI 110 Query: 255 TDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 + L +TF + ++ KVV D+ SKGYGFV F RA+ +MNGM + R Sbjct: 111 DNKALYDTFSA-FGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167 Query: 435 MRIGPAANRK 464 + +G ++K Sbjct: 168 VFVGRFKSQK 177 Score = 53.5 bits (127), Expect = 4e-07 Identities = 30/77 (38%), Positives = 42/77 (54%) Frame = +3 Query: 213 PDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQAR 392 P +++VGDL DVT+ ML E F P + +V D +T RS GY +V F P + R Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67 Query: 393 AMTEMNGMPCSSRPMRI 443 A+ MN +P+RI Sbjct: 68 ALDTMNFDVIKGKPVRI 84
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 61.6 bits (148), Expect = 1e-09 Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 13/146 (8%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTP--------- 215 G+ +G+GFV +S E Q FNG + A R+N EKR+++ Sbjct: 125 GRSRGFGFVTMSSKEEVEAACQQFNGYELDG--RALRVNSGPPPEKRENSSFRGGSRGGG 182 Query: 216 ----DYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTE 383 ++VG+LA V L+ F V AKVV D+ + RS+G+GFV + E Sbjct: 183 SFDSSNRVYVGNLAWGVDQDALETLFS-EQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEE 241 Query: 384 QARAMTEMNGMPCSSRPMRIGPAANR 461 A+ ++G+ + R +R+ PA R Sbjct: 242 VNNAIESLDGVDLNGRAIRVSPAEAR 267 Score = 52.0 bits (123), Expect = 1e-06 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 2/92 (2%) Frame = +3 Query: 195 EKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGD 374 E+R+ +PD IFVG+L L E F +V+ +V+ DK+T RS+G+GFV Sbjct: 79 EERNFSPDLKIFVGNLPFSADSAALAELFE-RAGNVEMVEVIYDKLTGRSRGFGFVTMSS 137 Query: 375 PTEQARAMTEMNGMPCSSRPMRI--GPAANRK 464 E A + NG R +R+ GP ++ Sbjct: 138 KEEVEAACQQFNGYELDGRALRVNSGPPPEKR 169
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 60.8 bits (146), Expect = 2e-09 Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 9/141 (6%) Frame = +3 Query: 66 QLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPD--------- 218 Q +G+GFV +S AE ++ FN +L RL + R P+ Sbjct: 189 QSRGFGFVTMSSVDEAETAVEKFN-----RYDLNGRLLTVNKAAPRGSRPERAPRVYEPA 243 Query: 219 YTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 + ++VG+L DV + L++ F H V+ A+VV D+ T RS+G+GFV D E A+ Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVE-ARVVYDRETGRSRGFGFVTMSDVDELNEAI 302 Query: 399 TEMNGMPCSSRPMRIGPAANR 461 + ++G R +R+ A R Sbjct: 303 SALDGQNLEGRAIRVNVAEER 323 Score = 39.7 bits (91), Expect = 0.006 Identities = 25/79 (31%), Positives = 41/79 (51%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 +FVG+LA DV L F +V+ A+V+ ++ T +S+G+GFV E A+ + Sbjct: 152 LFVGNLAYDVNSQALAMLFE-QAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210 Query: 405 MNGMPCSSRPMRIGPAANR 461 N + R + + AA R Sbjct: 211 FNRYDLNGRLLTVNKAAPR 229
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 60.5 bits (145), Expect = 3e-09 Identities = 40/114 (35%), Positives = 59/114 (51%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDL 242 G+ +GY F+EFAS A+ L + N + + L P T+FV L Sbjct: 519 GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKGL 578 Query: 243 AADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 + D T+ L+E+F SV+ A++VTD+ T SKG+GFV F + E A+A E Sbjct: 579 SEDTTEETLKESFE---GSVR-ARIVTDRETGSSKGFGFVDF-NSEEDAKAAKE 627 Score = 40.8 bits (94), Expect = 0.003 Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 11/138 (7%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMP--NVELAYRLNWASAGEKRDDT-------- 212 G+ +G ++EF S A AE+ L+ G + +V L Y G++++ T Sbjct: 426 GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT---GEKGQRQERTGKNSTWSG 482 Query: 213 PDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKV-VTDKMTMRSKGYGFVKFGDPTEQA 389 T+ + +L+ T+ LQE F K + V +SKGY F++F + Sbjct: 483 ESKTLVLSNLSYSATEETLQEVFE------KATFIKVPQNQQGKSKGYAFIEFASFEDAK 536 Query: 390 RAMTEMNGMPCSSRPMRI 443 A+ N M R +R+ Sbjct: 537 EALNSCNKMEIEGRTIRL 554
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 60.5 bits (145), Expect = 3e-09 Identities = 40/114 (35%), Positives = 59/114 (51%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDL 242 G+ +GY F+EFAS A+ L + N + + L P T+FV L Sbjct: 522 GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKGL 581 Query: 243 AADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 + D T+ L+E+F SV+ A++VTD+ T SKG+GFV F + E A+A E Sbjct: 582 SEDTTEETLKESFE---GSVR-ARIVTDRETGSSKGFGFVDF-NSEEDAKAAKE 630 Score = 39.7 bits (91), Expect = 0.006 Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 11/138 (7%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMP--NVELAYRLNWASAGEKRDDT-------- 212 G+ +G ++EF S A AE+ L+ G + +V L Y G++++ T Sbjct: 429 GRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT---GEKGQRQERTGKNSTWSG 485 Query: 213 PDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKV-VTDKMTMRSKGYGFVKFGDPTEQA 389 T+ + +L+ T+ LQE F K + V +SKGY F++F + Sbjct: 486 ESKTLVLSNLSYSATEETLQEVFE------KATFIKVPQNPHGKSKGYAFIEFASFEDAK 539 Query: 390 RAMTEMNGMPCSSRPMRI 443 A+ N M R +R+ Sbjct: 540 EALNSCNKMEIEGRTIRL 557
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 60.5 bits (145), Expect = 3e-09 Identities = 40/135 (29%), Positives = 73/135 (54%), Gaps = 5/135 (3%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDD----TPDYT-IFVG 236 +GYGFV F + AAER ++ NG M+ N + + S E+ + ++T +++ Sbjct: 138 KGYGFVHFETQEAAERAIEKMNG-MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 196 Query: 237 DLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM 416 + D+ D L++ F P++ KV+TD+ + +SKG+GFV F + +A+ EMNG Sbjct: 197 NFGEDMDDERLKDLFGKFGPAL-SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGK 254 Query: 417 PCSSRPMRIGPAANR 461 + + + +G A + Sbjct: 255 ELNGKQIYVGRAQKK 269 Score = 58.9 bits (141), Expect = 9e-09 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 14/148 (9%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMM-----------PNVELAYRLNWASAGEKRDD 209 G+ +G+GFV F H A++ + NG+ + VE L K+D Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDR 287 Query: 210 TPDY---TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPT 380 Y ++V +L + D L++ F + ++ AKV+ + RSKG+GFV F P Sbjct: 288 ITRYQGVNLYVKNLDDGIDDERLRKEFSP-FGTITSAKVMMEGG--RSKGFGFVCFSSPE 344 Query: 381 EQARAMTEMNGMPCSSRPMRIGPAANRK 464 E +A+TEMNG +++P+ + A ++ Sbjct: 345 EATKAVTEMNGRIVATKPLYVALAQRKE 372 Score = 58.9 bits (141), Expect = 9e-09 Identities = 41/130 (31%), Positives = 63/130 (48%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADV 254 GY +V F A AER L T N ++ + R+ W+ + IF+ +L + Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPV--RIMWSQRDPSLRKSGVGNIFIKNLDKSI 110 Query: 255 TDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 + L +TF + ++ KVV D+ SKGYGFV F RA+ +MNGM + R Sbjct: 111 DNKALYDTFSA-FGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167 Query: 435 MRIGPAANRK 464 + +G +RK Sbjct: 168 VFVGRFKSRK 177 Score = 53.5 bits (127), Expect = 4e-07 Identities = 30/77 (38%), Positives = 42/77 (54%) Frame = +3 Query: 213 PDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQAR 392 P +++VGDL DVT+ ML E F P + +V D +T RS GY +V F P + R Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67 Query: 393 AMTEMNGMPCSSRPMRI 443 A+ MN +P+RI Sbjct: 68 ALDTMNFDVIKGKPVRI 84
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 60.5 bits (145), Expect = 3e-09 Identities = 40/135 (29%), Positives = 73/135 (54%), Gaps = 5/135 (3%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDD----TPDYT-IFVG 236 +GYGFV F + AAER ++ NG M+ N + + S E+ + ++T +++ Sbjct: 138 KGYGFVHFETQEAAERAIEKMNG-MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 196 Query: 237 DLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM 416 + D+ D L++ F P++ KV+TD+ + +SKG+GFV F + +A+ EMNG Sbjct: 197 NFGEDMDDERLKDLFGKFGPAL-SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGK 254 Query: 417 PCSSRPMRIGPAANR 461 + + + +G A + Sbjct: 255 ELNGKQIYVGRAQKK 269 Score = 58.9 bits (141), Expect = 9e-09 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 14/148 (9%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMM-----------PNVELAYRLNWASAGEKRDD 209 G+ +G+GFV F H A++ + NG+ + VE L K+D Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDR 287 Query: 210 TPDY---TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPT 380 Y ++V +L + D L++ F + ++ AKV+ + RSKG+GFV F P Sbjct: 288 ITRYQGVNLYVKNLDDGIDDERLRKEFSP-FGTITSAKVMMEGG--RSKGFGFVCFSSPE 344 Query: 381 EQARAMTEMNGMPCSSRPMRIGPAANRK 464 E +A+TEMNG +++P+ + A ++ Sbjct: 345 EATKAVTEMNGRIVATKPLYVALAQRKE 372 Score = 58.9 bits (141), Expect = 9e-09 Identities = 41/130 (31%), Positives = 63/130 (48%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADV 254 GY +V F A AER L T N ++ + R+ W+ + IF+ +L + Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPV--RIMWSQRDPSLRKSGVGNIFIKNLDKSI 110 Query: 255 TDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 + L +TF + ++ KVV D+ SKGYGFV F RA+ +MNGM + R Sbjct: 111 DNKALYDTFSA-FGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167 Query: 435 MRIGPAANRK 464 + +G +RK Sbjct: 168 VFVGRFKSRK 177 Score = 53.5 bits (127), Expect = 4e-07 Identities = 30/77 (38%), Positives = 42/77 (54%) Frame = +3 Query: 213 PDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQAR 392 P +++VGDL DVT+ ML E F P + +V D +T RS GY +V F P + R Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67 Query: 393 AMTEMNGMPCSSRPMRI 443 A+ MN +P+RI Sbjct: 68 ALDTMNFDVIKGKPVRI 84
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 60.1 bits (144), Expect = 4e-09 Identities = 30/79 (37%), Positives = 47/79 (59%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 +F+G L+ D L++ F H+ V AKV+ D+ T RS+G+GFV F D A++E Sbjct: 37 LFIGGLSWGTDDASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 Query: 405 MNGMPCSSRPMRIGPAANR 461 M+G + R +R+ PA +R Sbjct: 96 MDGKELNGRHIRVNPANDR 114
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 60.1 bits (144), Expect = 4e-09 Identities = 40/114 (35%), Positives = 60/114 (52%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDL 242 G+ +GY F+EFAS A+ L + N + + + L P T+FV L Sbjct: 519 GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGL 578 Query: 243 AADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 + D T+ L+E+F SV+ A++VTD+ T SKG+GFV F + E A+A E Sbjct: 579 SEDTTEETLKESFD---GSVR-ARIVTDRETGSSKGFGFVDF-NSEEDAKAAKE 627 Score = 35.8 bits (81), Expect = 0.086 Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 15/142 (10%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQT--------------FNGQMMPNVELAYRLNWASAGEK 200 G+ +G ++EF + A AE+ + + G+ N + N +GE Sbjct: 425 GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGES 484 Query: 201 RDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKV-VTDKMTMRSKGYGFVKFGDP 377 + T+ + +L+ T+ LQE F K + V +SKGY F++F Sbjct: 485 K------TLVLSNLSYSATEETLQEVFE------KATFIKVPQNQNGKSKGYAFIEFASF 532 Query: 378 TEQARAMTEMNGMPCSSRPMRI 443 + A+ N R +R+ Sbjct: 533 EDAKEALNSCNKREIEGRAIRL 554
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 60.1 bits (144), Expect = 4e-09 Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 14/148 (9%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMM-----------PNVELAYRLNWASAGEKRDD 209 G+ +G+GFV F H A++ + NG+ + VE L K+D Sbjct: 228 GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDR 287 Query: 210 TPDY---TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPT 380 Y ++V +L + D L++ F + S+ AKV+ + RSKG+GFV F P Sbjct: 288 ITRYQGVNLYVKNLDDGIDDERLRKEF-TPFGSITSAKVMMEGG--RSKGFGFVCFSSPE 344 Query: 381 EQARAMTEMNGMPCSSRPMRIGPAANRK 464 E +A+TEMNG +++P+ + A ++ Sbjct: 345 EATKAVTEMNGRIVATKPLYVALAQRKE 372 Score = 58.9 bits (141), Expect = 9e-09 Identities = 41/130 (31%), Positives = 63/130 (48%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADV 254 GY +V F A AER L T N ++ + R+ W+ + IF+ +L + Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPV--RIMWSQRDPSLRKSGVGNIFIKNLDKSI 110 Query: 255 TDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 + L +TF + ++ KVV D+ SKGYGFV F RA+ +MNGM + R Sbjct: 111 DNKALYDTFSA-FGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRK 167 Query: 435 MRIGPAANRK 464 + +G +RK Sbjct: 168 VFVGRFKSRK 177 Score = 56.6 bits (135), Expect = 5e-08 Identities = 39/135 (28%), Positives = 69/135 (51%), Gaps = 5/135 (3%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDD----TPDYT-IFVG 236 +GYGFV F + AAER + NG M+ N + + S E+ + ++T +++ Sbjct: 138 KGYGFVHFETQEAAERAIDKMNG-MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 196 Query: 237 DLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM 416 + D+ D L+E F Y + KV+TD +S+G+GFV F + +A+ +MNG Sbjct: 197 NFGEDMDDERLKEWFG-QYGAALSVKVMTDDHG-KSRGFGFVSFERHEDAQKAVDDMNGK 254 Query: 417 PCSSRPMRIGPAANR 461 + + + +G A + Sbjct: 255 DLNGKAIFVGRAQKK 269 Score = 53.5 bits (127), Expect = 4e-07 Identities = 30/77 (38%), Positives = 42/77 (54%) Frame = +3 Query: 213 PDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQAR 392 P +++VGDL DVT+ ML E F P + +V D +T RS GY +V F P + R Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67 Query: 393 AMTEMNGMPCSSRPMRI 443 A+ MN +P+RI Sbjct: 68 ALDTMNFDVIKGKPVRI 84
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 60.1 bits (144), Expect = 4e-09 Identities = 40/114 (35%), Positives = 60/114 (52%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDL 242 G+ +GY F+EFAS A+ L + N + + + L P T+FV L Sbjct: 521 GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGL 580 Query: 243 AADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 + D T+ L+E+F SV+ A++VTD+ T SKG+GFV F + E A+A E Sbjct: 581 SEDTTEETLKESFD---GSVR-ARIVTDRETGSSKGFGFVDF-NSEEDAKAAKE 629 Score = 35.8 bits (81), Expect = 0.086 Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 15/142 (10%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQT--------------FNGQMMPNVELAYRLNWASAGEK 200 G+ +G ++EF + A AE+ + + G+ N + N +GE Sbjct: 427 GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGES 486 Query: 201 RDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKV-VTDKMTMRSKGYGFVKFGDP 377 + T+ + +L+ T+ LQE F K + V +SKGY F++F Sbjct: 487 K------TLVLSNLSYSATEETLQEVFE------KATFIKVPQNQNGKSKGYAFIEFASF 534 Query: 378 TEQARAMTEMNGMPCSSRPMRI 443 + A+ N R +R+ Sbjct: 535 EDAKEALNSCNKREIEGRAIRL 556
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 60.1 bits (144), Expect = 4e-09 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 15/149 (10%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTP--------- 215 G+ +G+GFV F + AAE +Q NG+ M + Y E++ + Sbjct: 220 GKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQK 279 Query: 216 ------DYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDP 377 ++V +L + D L+ F Y ++ AKV+TD+ RSKG+GFV F Sbjct: 280 RHESVFGVNLYVKNLDDTIDDDRLRIAFSP-YGNITSAKVMTDEEG-RSKGFGFVCFNAA 337 Query: 378 TEQARAMTEMNGMPCSSRPMRIGPAANRK 464 +E A+TE+NG S+P+ + A ++ Sbjct: 338 SEATCAVTELNGRVVGSKPLYVALAQRKE 366 Score = 53.9 bits (128), Expect = 3e-07 Identities = 36/130 (27%), Positives = 62/130 (47%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADV 254 GY +V F A AER L T N ++ N + R+ W+ + +F+ +L + Sbjct: 44 GYAYVNFQQPADAERALDTMNFDLVRNKPI--RIMWSQRDPSLRRSGVGNVFIKNLDRAI 101 Query: 255 TDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 + + +TF + ++ KV TD+ SKGYGFV F ++ ++NGM + + Sbjct: 102 DNKAIYDTFSA-FGNILSCKVATDEKG-NSKGYGFVHFETEEAANTSIDKVNGMLLNGKK 159 Query: 435 MRIGPAANRK 464 + +G RK Sbjct: 160 VYVGKFIPRK 169 Score = 45.8 bits (107), Expect = 8e-05 Identities = 27/74 (36%), Positives = 40/74 (54%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 +++VGDL DV + L + F P V +V D +T RS GY +V F P + RA+ Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGP-VLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61 Query: 402 EMNGMPCSSRPMRI 443 MN ++P+RI Sbjct: 62 TMNFDLVRNKPIRI 75 Score = 44.3 bits (103), Expect = 2e-04 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 6/123 (4%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPD-----YTI 227 G +GYGFV F + AA + NG M+ N + Y + E+ + + + Sbjct: 127 GNSKGYGFVHFETEEAANTSIDKVNG-MLLNGKKVYVGKFIPRKEREKELGEKAKLFTNV 185 Query: 228 FVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE- 404 +V + D D L+E F Y + KV++ K +SKG+GFV F + TE A A + Sbjct: 186 YVKNFTEDFDDEKLKEFFE-PYGKITSYKVMS-KEDGKSKGFGFVAF-ETTEAAEAAVQA 242 Query: 405 MNG 413 +NG Sbjct: 243 LNG 245
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 60.1 bits (144), Expect = 4e-09 Identities = 40/114 (35%), Positives = 60/114 (52%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDL 242 G+ +GY F+EFAS A+ L + N + + + L P T+FV L Sbjct: 520 GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGL 579 Query: 243 AADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 + D T+ L+E+F SV+ A++VTD+ T SKG+GFV F + E A+A E Sbjct: 580 SEDTTEETLKESFD---GSVR-ARIVTDRETGSSKGFGFVDF-NSEEDAKAAKE 628 Score = 35.8 bits (81), Expect = 0.086 Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 15/142 (10%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQT--------------FNGQMMPNVELAYRLNWASAGEK 200 G+ +G ++EF + A AE+ + + G+ N + N +GE Sbjct: 426 GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGES 485 Query: 201 RDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKV-VTDKMTMRSKGYGFVKFGDP 377 + T+ + +L+ T+ LQE F K + V +SKGY F++F Sbjct: 486 K------TLVLSNLSYSATEETLQEVFE------KATFIKVPQNQNGKSKGYAFIEFASF 533 Query: 378 TEQARAMTEMNGMPCSSRPMRI 443 + A+ N R +R+ Sbjct: 534 EDAKEALNSCNKREIEGRAIRL 555
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 59.3 bits (142), Expect = 7e-09 Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 19/152 (12%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTP--------- 215 G+ +G+GFV +S E Q FNG + A R+N EKR+++ Sbjct: 125 GRSRGFGFVTMSSKEEVEAACQQFNGYELDG--RALRVNSGPPPEKRENSSFRENSSFRG 182 Query: 216 ----------DYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVK 365 ++VG+LA V L+ F V AKVV D+ + RS+G+GFV Sbjct: 183 GSRGGGSFDSSNRVYVGNLAWGVDQDALETLFS-EQGKVVDAKVVYDRDSGRSRGFGFVT 241 Query: 366 FGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 461 + E A+ ++G+ + R +R+ PA R Sbjct: 242 YSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 273 Score = 53.1 bits (126), Expect = 5e-07 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 3/115 (2%) Frame = +3 Query: 195 EKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGD 374 E+R+ +PD IFVG+L L E F +V+ +V+ DK+T RS+G+GFV Sbjct: 79 EERNFSPDLKIFVGNLLFSADSAALAELFE-RAGNVEMVEVIYDKLTGRSRGFGFVTMSS 137 Query: 375 PTEQARAMTEMNGMPCSSRPMRIG---PAANRKTTGVXERVPIXNTNTQGAXXDN 530 E A + NG R +R+ P R+ + E + G D+ Sbjct: 138 KEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDS 192
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 58.9 bits (141), Expect = 9e-09 Identities = 41/134 (30%), Positives = 65/134 (48%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAAD 251 QG+GFVEF A+ ++ N M+ ++N ASA EK D IFVG+L + Sbjct: 54 QGFGFVEFMGEEDADYAIKILN--MIKLYGKPIKVNKASAHEKNMDV-GANIFVGNLDPE 110 Query: 252 VTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSR 431 V + +L +TF ++ K++ D + SKG+ F+ F A+ MNG +R Sbjct: 111 VDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNR 170 Query: 432 PMRIGPAANRKTTG 473 + + A R + G Sbjct: 171 AITVSYAFKRDSKG 184 Score = 40.4 bits (93), Expect = 0.003 Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 1/110 (0%) Frame = +3 Query: 186 SAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVK 365 SAG + D TI+VG L V++ +L E V V + D++T +G+GFV+ Sbjct: 2 SAGPIVERNQDATIYVGGLDEKVSESILWE-LMVQAGPVVSVNMPKDRVTANHQGFGFVE 60 Query: 366 FGDPTEQARAMTEMNGMPCSSRPMRIGPA-ANRKTTGVXERVPIXNTNTQ 512 F + A+ +N + +P+++ A A+ K V + + N + + Sbjct: 61 FMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPE 110 Score = 33.9 bits (76), Expect = 0.33 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPN--VELAYRLNWASAGEK 200 G +G+ F+ FAS A++ L+ NGQ + N + ++Y S GE+ Sbjct: 139 GTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGER 186
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 58.5 bits (140), Expect = 1e-08 Identities = 41/114 (35%), Positives = 60/114 (52%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDL 242 G+ +GY F+EFAS A+ L + N + + L G P T+FV L Sbjct: 520 GKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQ----GSNSRSQPSKTLFVKGL 575 Query: 243 AADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 + D T+ L+E+F SV+ A++VTD+ T SKG+GFV F + E A+A E Sbjct: 576 SEDTTEETLKESFE---GSVR-ARIVTDRETGSSKGFGFVDF-NSEEDAKAAKE 624
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 58.5 bits (140), Expect = 1e-08 Identities = 34/133 (25%), Positives = 65/133 (48%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDL 242 G+ +GYGFV+F AA +QT N ++ + E+ + + +++ +L Sbjct: 149 GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNL 208 Query: 243 AADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPC 422 ADV++ +L+E F + + + D+ + +GY FV F +P + RA +NG Sbjct: 209 DADVSEDLLREKF-AEFGKIVSLAIAKDENRL-CRGYAFVNFDNPEDARRAAETVNGTKF 266 Query: 423 SSRPMRIGPAANR 461 S+ + +G A + Sbjct: 267 GSKCLYVGRAQKK 279 Score = 38.5 bits (88), Expect = 0.013 Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 14/157 (8%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNG-------------QMMPNVELAYRLNWASAGEKRDDT 212 +GY FV F + A R +T NG Q E R + E++ Sbjct: 241 RGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMI 300 Query: 213 PDYT-IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQA 389 + I+V ++ VT+ L++ F ++ K++ D+ +SKG+GFV F P E Sbjct: 301 AKVSNIYVKNVNVAVTEEELRKHFS-QCGTITSTKLMCDEKG-KSKGFGFVCFSTPEEAI 358 Query: 390 RAMTEMNGMPCSSRPMRIGPAANRKTTGVXERVPIXN 500 A+ +G +P+ + A ++ + +V N Sbjct: 359 DAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGN 395
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 57.8 bits (138), Expect = 2e-08 Identities = 41/148 (27%), Positives = 71/148 (47%), Gaps = 14/148 (9%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPN-----------VELAYRLNWASAGEKRDD 209 G+ +G+GFV + H A + ++ NG+ + VE L K++ Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQER 287 Query: 210 TPDY---TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPT 380 Y +++ +L + D L++ F + S+ AKV+ + RSKG+GFV F P Sbjct: 288 ISRYQGVNLYIKNLDDTIDDEKLRKEFSP-FGSITSAKVMLEDG--RSKGFGFVCFSSPE 344 Query: 381 EQARAMTEMNGMPCSSRPMRIGPAANRK 464 E +A+TEMNG S+P+ + A ++ Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKE 372 Score = 55.1 bits (131), Expect = 1e-07 Identities = 38/130 (29%), Positives = 62/130 (47%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADV 254 GY +V F A AER L T N ++ + R+ W+ + +F+ +L + Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPI--RIMWSQRDPSLRKSGVGNVFIKNLDKSI 110 Query: 255 TDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 + L +TF + ++ KVV D+ SKGY FV F +A+ +MNGM + R Sbjct: 111 DNKALYDTFSA-FGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRK 167 Query: 435 MRIGPAANRK 464 + +G +RK Sbjct: 168 VFVGRFKSRK 177 Score = 54.7 bits (130), Expect = 2e-07 Identities = 31/77 (40%), Positives = 43/77 (55%) Frame = +3 Query: 213 PDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQAR 392 P +++VGDL +DVT+ ML E F P V +V D +T RS GY +V F P + R Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 67 Query: 393 AMTEMNGMPCSSRPMRI 443 A+ MN +P+RI Sbjct: 68 ALDTMNFDVIKGKPIRI 84 Score = 50.8 bits (120), Expect = 3e-06 Identities = 33/134 (24%), Positives = 66/134 (49%), Gaps = 4/134 (2%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVEL---AYRLNWASAGEKRDDTPDYT-IFVGD 239 +GY FV F + AA++ ++ NG ++ + ++ ++ E ++T +++ + Sbjct: 138 KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKN 197 Query: 240 LAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMP 419 +V D L+E F + KV+ D +SKG+GFV + + +A+ EMNG Sbjct: 198 FGEEVDDESLKELFS-QFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKE 255 Query: 420 CSSRPMRIGPAANR 461 S + + +G A + Sbjct: 256 ISGKIIFVGRAQKK 269
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 57.0 bits (136), Expect = 4e-08 Identities = 33/114 (28%), Positives = 57/114 (50%) Frame = +3 Query: 120 VLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPS 299 ++Q + +A L SAG R ++VG L ++T+ ML+ F + Sbjct: 224 IVQASQAEKNRAAAMANNLQKGSAGPMR-------LYVGSLHFNITEDMLRGIFEP-FGR 275 Query: 300 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 461 ++ +++ D T RSKGYGF+ F D +A+ ++NG + RPM++G R Sbjct: 276 IESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 57.0 bits (136), Expect = 4e-08 Identities = 33/114 (28%), Positives = 57/114 (50%) Frame = +3 Query: 120 VLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPS 299 ++Q + +A L SAG R ++VG L ++T+ ML+ F + Sbjct: 224 IVQASQAEKNRAAAMANNLQKGSAGPMR-------LYVGSLHFNITEDMLRGIFEP-FGR 275 Query: 300 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 461 ++ +++ D T RSKGYGF+ F D +A+ ++NG + RPM++G R Sbjct: 276 IESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)| Length = 611 Score = 56.6 bits (135), Expect = 5e-08 Identities = 30/81 (37%), Positives = 46/81 (56%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 +F+GDL VT+ L+ F+ YPS AKV D +T +S G+G++ F D E +AM E Sbjct: 93 LFIGDLHETVTEETLKGIFK-KYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEE 151 Query: 405 MNGMPCSSRPMRIGPAANRKT 467 +N + + +RI P+ T Sbjct: 152 LNYTKVNGKEIRIMPSLRNTT 172
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 56.6 bits (135), Expect = 5e-08 Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 4/137 (2%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELA---YRLNWASAGEKRDDTPDYT-IF 230 G+ +GYGFV+F A+ + NG ++ + ++ + A + P +T ++ Sbjct: 169 GRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVY 228 Query: 231 VGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMN 410 V +L ++TD L++TF Y + A V+ D+ + S+ +GFV F P A A+ +MN Sbjct: 229 VKNLPKEITDDELKKTFG-KYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKMN 286 Query: 411 GMPCSSRPMRIGPAANR 461 G+ + +G A + Sbjct: 287 GISLGEDVLYVGRAQKK 303 Score = 53.5 bits (127), Expect = 4e-07 Identities = 32/87 (36%), Positives = 47/87 (54%) Frame = +3 Query: 183 ASAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFV 362 A+A E P+ +++VGDL V + L + F P V +V D +T RS GY +V Sbjct: 33 AAAAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAP-VHNLRVCRD-LTHRSLGYAYV 90 Query: 363 KFGDPTEQARAMTEMNGMPCSSRPMRI 443 F +P + +RAM +N P RP+RI Sbjct: 91 NFANPEDASRAMESLNYAPIRDRPIRI 117 Score = 50.8 bits (120), Expect = 3e-06 Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 19/153 (12%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDY------- 221 G + +GFV F S AA ++ NG + L + + +K+ D + Sbjct: 262 GNSRSFGFVNFVSPEAAAVAVEKMNG-----ISLGEDVLYVGRAQKKSDREEELRRKFEQ 316 Query: 222 ------------TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVK 365 +++ +L V D L+E F Y +V KV+ + + S+G+GFV Sbjct: 317 ERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFS-EYGNVTSCKVMMNSQGL-SRGFGFVA 374 Query: 366 FGDPTEQARAMTEMNGMPCSSRPMRIGPAANRK 464 + +P E AM EMNG +P+ + A ++ Sbjct: 375 YSNPEEALLAMKEMNGKMIGRKPLYVALAQRKE 407 Score = 49.7 bits (117), Expect = 6e-06 Identities = 35/130 (26%), Positives = 63/130 (48%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADV 254 GY +V FA+ A R +++ N P + R+ ++ + +F+ +L A + Sbjct: 86 GYAYVNFANPEDASRAMESLN--YAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASI 143 Query: 255 TDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 + L ETF + ++ KV D + RSKGYGFV+F A+ ++NGM + + Sbjct: 144 DNKALYETFS-SFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQ 201 Query: 435 MRIGPAANRK 464 + +G R+ Sbjct: 202 VFVGHFVRRQ 211
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 56.2 bits (134), Expect = 6e-08 Identities = 30/89 (33%), Positives = 46/89 (51%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 ++VG L ++T+ ML+ F + + ++ D T RSKGYGF+ F D RA+ + Sbjct: 265 LYVGSLHFNITEDMLRGIFEP-FGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 323 Query: 405 MNGMPCSSRPMRIGPAANRKTTGVXERVP 491 +NG + RPMR+G R G P Sbjct: 324 LNGFELAGRPMRVGHVTERLDGGTDITFP 352 Score = 32.0 bits (71), Expect = 1.2 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYR-LNWASAGEKRDDTPDYTIFVGD 239 G+ +GYGF+ F+ A R L+ NG ELA R + E+ D D T GD Sbjct: 301 GRSKGYGFITFSDSECARRALEQLNG-----FELAGRPMRVGHVTERLDGGTDITFPDGD 355 Query: 240 LAADV 254 D+ Sbjct: 356 QELDL 360
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 56.2 bits (134), Expect = 6e-08 Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 20/153 (13%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVEL--------------------AYRLNW 182 G+L+G+GFV + H A + ++ N + +L AYRL Sbjct: 255 GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRL-- 312 Query: 183 ASAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFV 362 EK +FV +L V D L+E F Y ++ AKV+ + +SKG+GFV Sbjct: 313 ----EKMAKYQGVNLFVKNLDDSVDDEKLEEEF-APYGTITSAKVMRTE-NGKSKGFGFV 366 Query: 363 KFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 461 F P E +A+TE N + +P+ + A + Sbjct: 367 CFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 399 Score = 56.2 bits (134), Expect = 6e-08 Identities = 35/130 (26%), Positives = 61/130 (46%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADV 254 GY +V F H A + ++ N P R+ W+ IF+ +L D+ Sbjct: 79 GYAYVNFNDHEAGRKAIEQLN--YTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDI 136 Query: 255 TDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 + L +TF V + + +K+ TD+ +SKG+GFV F + A+ +NGM + + Sbjct: 137 DNKALYDTFSV-FGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQE 194 Query: 435 MRIGPAANRK 464 + + P +RK Sbjct: 195 IYVAPHLSRK 204 Score = 48.5 bits (114), Expect = 1e-05 Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 4/137 (2%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVEL--AYRLNWASAGEKRDDTPDY--TIF 230 G+ +G+GFV F AA+ + NG ++ E+ A L+ + ++T + ++ Sbjct: 162 GKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLY 221 Query: 231 VGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMN 410 V ++ ++ TD QE F P V + + + KG+GFV + + +A+ +N Sbjct: 222 VKNINSETTDEQFQELFAKFGPIVSAS--LEKDADGKLKGFGFVNYEKHEDAVKAVEALN 279 Query: 411 GMPCSSRPMRIGPAANR 461 + + +G A + Sbjct: 280 DSELNGEKLYVGRAQKK 296 Score = 41.6 bits (96), Expect = 0.002 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 5/89 (5%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 +++VGDL V++ L + F SV +V D +T S GY +V F D +A+ Sbjct: 38 SLYVGDLEPSVSEAHLYDIFSP-IGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE 96 Query: 402 EMNGMPCSSRPMRI-----GPAANRKTTG 473 ++N P R RI P+ +K +G Sbjct: 97 QLNYTPIKGRLCRIMWSQRDPSLRKKGSG 125
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 55.8 bits (133), Expect = 8e-08 Identities = 34/114 (29%), Positives = 61/114 (53%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADV 254 GY FV+FAS A+ ++T NG + N L ++++A G + D ++V +L + Sbjct: 144 GYAFVDFASEIDAQNAIKTVNGITVRNKRL--KVSYARPGG--ESIKDTNLYVTNLPRTI 199 Query: 255 TDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM 416 TD L++ F Y ++ ++ DK+T R +G FV+F E A++ +N + Sbjct: 200 TDDELEKIFG-KYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAISALNNV 252 Score = 35.0 bits (79), Expect = 0.15 Identities = 21/76 (27%), Positives = 36/76 (47%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 + V L D+TD L FR P + +++ D T S GY FV F + A+ Sbjct: 104 LIVNYLPQDMTDRELYALFRTCGP-INTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKT 162 Query: 405 MNGMPCSSRPMRIGPA 452 +NG+ ++ +++ A Sbjct: 163 VNGITVRNKRLKVSYA 178
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 55.1 bits (131), Expect = 1e-07 Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 14/145 (9%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFN-------------GQMMPNVELAYRLNWASAG-EKRDD 209 +G+GFV +A+H A++ + N Q E R + EK + Sbjct: 301 RGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNK 360 Query: 210 TPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQA 389 +F+ +L +V D L+ F + ++ AK++TD+ +SKG+GFV + P E Sbjct: 361 YQGVNLFIKNLQDEVDDERLKAEFSA-FGTITSAKIMTDEQG-KSKGFGFVCYTTPEEAN 418 Query: 390 RAMTEMNGMPCSSRPMRIGPAANRK 464 +A+TEMN + +P+ + A ++ Sbjct: 419 KAVTEMNQRMLAGKPLYVALAQRKE 443 Score = 45.8 bits (107), Expect = 8e-05 Identities = 27/74 (36%), Positives = 40/74 (54%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 +++VG+L VT+ ML E F P V +V D +T RS GY +V F + + +A+ Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGP-VASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 139 Query: 402 EMNGMPCSSRPMRI 443 E+N RP RI Sbjct: 140 ELNYTLIKGRPCRI 153 Score = 44.3 bits (103), Expect = 2e-04 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 1/131 (0%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADV 254 GY +V F + E+ L N ++ R+ W+ +F+ +L + Sbjct: 122 GYAYVNFHNMEDGEKALDELNYTLIKGRPC--RIMWSQRDPSLRKMGTGNVFIKNLDPAI 179 Query: 255 TDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE-MNGMPCSSR 431 + L +TF + + KV D++ +KGYGFV F D E A A E +NGM + + Sbjct: 180 DNKALHDTFSA-FGKILSCKVAVDELG-NAKGYGFVHF-DSVESANAAIEHVNGMLLNDK 236 Query: 432 PMRIGPAANRK 464 + +G +R+ Sbjct: 237 KVYVGHHVSRR 247 Score = 42.4 bits (98), Expect = 0.001 Identities = 31/138 (22%), Positives = 66/138 (47%), Gaps = 5/138 (3%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDT----PDYT-I 227 G +GYGFV F S +A ++ NG M+ N + Y + S E++ ++T + Sbjct: 205 GNAKGYGFVHFDSVESANAAIEHVNG-MLLNDKKVYVGHHVSRRERQSKVEALKANFTNV 263 Query: 228 FVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEM 407 ++ +L ++T+ + F + + +V D+ + +G+GFV + + +A+ E+ Sbjct: 264 YIKNLDTEITEQEFSDLFG-QFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDEL 321 Query: 408 NGMPCSSRPMRIGPAANR 461 N + + +G A + Sbjct: 322 NDKEYKGKKLYVGRAQKK 339
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 55.1 bits (131), Expect = 1e-07 Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 4/136 (2%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPN--VELAYRLNWASAGEKRDDTPDYTIFVG 236 G GYGFV + + AER + T NG + + ++++Y A + D +++ Sbjct: 58 GHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY------ARPSSEVIKDANLYIS 111 Query: 237 DLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNG- 413 L +T +++ F + + ++V+ D+ T S+G F++F +E A+T NG Sbjct: 112 GLPRTMTQKDVEDMFS-RFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGH 170 Query: 414 -MPCSSRPMRIGPAAN 458 P SS P+ + AAN Sbjct: 171 KPPGSSEPITVKFAAN 186 Score = 40.0 bits (92), Expect = 0.005 Identities = 25/88 (28%), Positives = 43/88 (48%) Frame = +3 Query: 189 AGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKF 368 A + R D + V L ++T L+ F V+ AK++ DK+ S GYGFV + Sbjct: 10 AEDCRGDIGRTNLIVNYLPQNMTQDELRSLFS-SIGEVESAKLIRDKVAGHSLGYGFVNY 68 Query: 369 GDPTEQARAMTEMNGMPCSSRPMRIGPA 452 + RA+ +NG+ S+ +++ A Sbjct: 69 VTAKDAERAINTLNGLRLQSKTIKVSYA 96 Score = 38.5 bits (88), Expect = 0.013 Identities = 22/81 (27%), Positives = 41/81 (50%) Frame = +3 Query: 219 YTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 + IF+ +L D + +L + F + +V KV+ D T + KG+GFV + E A A+ Sbjct: 244 WCIFIYNLGQDADEGILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302 Query: 399 TEMNGMPCSSRPMRIGPAANR 461 +NG + +++ N+ Sbjct: 303 ASLNGYRLGDKILQVSFKTNK 323
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 54.7 bits (130), Expect = 2e-07 Identities = 31/84 (36%), Positives = 47/84 (55%) Frame = +3 Query: 207 DTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQ 386 D + +FVG+L DV D L + F YPS+ KVV D+ +++G+GFV F D + Sbjct: 26 DPNHFRLFVGNLGNDVNDESLYQAFS-EYPSLVKTKVVRDREG-KTRGFGFVSFKDSDQF 83 Query: 387 ARAMTEMNGMPCSSRPMRIGPAAN 458 +A E NG SRP+++ A + Sbjct: 84 LKAWREKNGKYIGSRPVKLSRATS 107
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 54.7 bits (130), Expect = 2e-07 Identities = 31/114 (27%), Positives = 56/114 (49%) Frame = +3 Query: 201 RDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPT 380 +++ P +++G + D T+ + + P + K++ D T RSKGY F++F D Sbjct: 12 QNNPPSRVVYLGSIPYDQTEEQILDLCSNVGPVIN-LKMMFDPQTGRSKGYAFIEFRDLE 70 Query: 381 EQARAMTEMNGMPCSSRPMRIGPAANRKTTGVXERVPIXNTNTQGAXXDNDXNN 542 A A+ +NG SR ++ G ++N +GV ++ N G +N NN Sbjct: 71 SSASAVRNLNGYQLGSRFLKCGYSSNSDISGVSQQQQQQYNNINGNNNNNGNNN 124
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 54.3 bits (129), Expect = 2e-07 Identities = 38/174 (21%), Positives = 75/174 (43%), Gaps = 14/174 (8%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRD--------------D 209 +G+ FV S A+ ++ F+G + + G +R+ D Sbjct: 155 RGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVD 214 Query: 210 TPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQA 389 +P + ++V +L+ +T L++ F P AKV+ D+ + RS+G+GF+ F Sbjct: 215 SP-HKLYVANLSWALTSQGLRDAF-ADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMN 272 Query: 390 RAMTEMNGMPCSSRPMRIGPAANRKTTGVXERVPIXNTNTQGAXXDNDXNNTTI 551 A+ MN + RP+R+ A ++ P+ + +ND +N+ + Sbjct: 273 SALDTMNEVELEGRPLRLNVAG--------QKAPVSSPPVVETSPENDSDNSEL 318
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 54.3 bits (129), Expect = 2e-07 Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 32/165 (19%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTP--------- 215 G+ +G+GFV ++ E Q FNG + A R+N A KR+++ Sbjct: 125 GRSRGFGFVTMSTKEEVEAAEQQFNGYEIDG--RAIRVNAGPAPAKRENSSFGGGRGGNS 182 Query: 216 -----------------------DYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTD 326 ++VG+L+ V D L+E F +V AKVV D Sbjct: 183 SYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFS-EQGNVVDAKVVYD 241 Query: 327 KMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 461 + + RS+G+GFV + E A+ +NG+ R +R+ A R Sbjct: 242 RDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286 Score = 43.5 bits (101), Expect = 4e-04 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%) Frame = +3 Query: 216 DYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARA 395 D +FVG+L V L F +V+ +V+ DK+T RS+G+GFV E A Sbjct: 86 DLKLFVGNLPFSVDSAALAGLFE-RAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAA 144 Query: 396 MTEMNGMPCSSRPMRI--GPAANRK 464 + NG R +R+ GPA ++ Sbjct: 145 EQQFNGYEIDGRAIRVNAGPAPAKR 169
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 54.3 bits (129), Expect = 2e-07 Identities = 31/86 (36%), Positives = 45/86 (52%) Frame = +3 Query: 216 DYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARA 395 +Y FVG LA D LQ TF + V +K++ D+ + RS+G+GFV F D A Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFS-QFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63 Query: 396 MTEMNGMPCSSRPMRIGPAANRKTTG 473 + EMNG R + + A +R + G Sbjct: 64 IEEMNGKELDGRVITVNEAQSRGSGG 89
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 54.3 bits (129), Expect = 2e-07 Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 32/165 (19%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTP--------- 215 G+ +G+GFV ++ E Q FNG + A R+N A KR+++ Sbjct: 126 GRSRGFGFVTMSTKEEVEAAEQQFNGYEIDG--RAIRVNAGPAPAKRENSSFGGGRGGNS 183 Query: 216 -----------------------DYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTD 326 ++VG+L+ V D L+E F +V AKVV D Sbjct: 184 SYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFS-EQGNVVDAKVVYD 242 Query: 327 KMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 461 + + RS+G+GFV + E A+ +NG+ R +R+ A R Sbjct: 243 RDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEER 287 Score = 41.6 bits (96), Expect = 0.002 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%) Frame = +3 Query: 216 DYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARA 395 D +FVG+L V L F +V+ +V+ DK++ RS+G+GFV E A Sbjct: 87 DLKLFVGNLPFSVDSAALAGLFE-RAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAA 145 Query: 396 MTEMNGMPCSSRPMRI--GPAANRK 464 + NG R +R+ GPA ++ Sbjct: 146 EQQFNGYEIDGRAIRVNAGPAPAKR 170
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 53.9 bits (128), Expect = 3e-07 Identities = 30/82 (36%), Positives = 43/82 (52%) Frame = +3 Query: 216 DYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARA 395 +Y FVG LA D L+ TF + V +K++ D+ T RS+G+GFV F D A Sbjct: 5 EYRCFVGGLAWATGDAELERTFS-QFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDA 63 Query: 396 MTEMNGMPCSSRPMRIGPAANR 461 + EMNG R + + A +R Sbjct: 64 IDEMNGKELDGRTITVNEAQSR 85
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 53.9 bits (128), Expect = 3e-07 Identities = 32/114 (28%), Positives = 61/114 (53%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADV 254 GY FV+FAS A+ +++ NG + N L ++++A G + D ++V +L + Sbjct: 127 GYAFVDFASEIDAQNAIKSLNGVTVRNKRL--KVSYARPG--GESIKDTNLYVTNLPRTI 182 Query: 255 TDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM 416 TD L++ F Y ++ ++ DK+T + +G FV+F E A++ +N + Sbjct: 183 TDDELEKIFG-KYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALNNV 235 Score = 35.8 bits (81), Expect = 0.086 Identities = 21/76 (27%), Positives = 36/76 (47%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 + V L D+TD L FR P + +++ D T S GY FV F + A+ Sbjct: 87 LIVNYLPQDMTDRELYALFRTCGP-INTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKS 145 Query: 405 MNGMPCSSRPMRIGPA 452 +NG+ ++ +++ A Sbjct: 146 LNGVTVRNKRLKVSYA 161
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 53.5 bits (127), Expect = 4e-07 Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Frame = +3 Query: 195 EKRDDTPD-YTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFG 371 +K ++T + TIFVG L+ + D L++ F H V GA+V+ ++ T RS+GYG+V F Sbjct: 159 QKNEETEEPATIFVGRLSWSIDDEWLKKEFE-HIGGVIGARVIYERGTDRSRGYGYVDFE 217 Query: 372 DPTEQARAMTEMNGMPCSSRPM 437 + + +A+ EM G RP+ Sbjct: 218 NKSYAEKAIQEMQGKEIDGRPI 239 Score = 52.8 bits (125), Expect = 7e-07 Identities = 33/133 (24%), Positives = 66/133 (49%), Gaps = 9/133 (6%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRD------DTPDY---T 224 +GYG+V+F + + AE+ +Q G+ + + ++ + D DTP T Sbjct: 209 RGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDT 268 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 +F+G+L+ + + E F H V ++ T T + KG+G+V+F + + +A+ Sbjct: 269 LFLGNLSFNADRDAIFELFAKH-GEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDA 327 Query: 405 MNGMPCSSRPMRI 443 + G +RP+R+ Sbjct: 328 LQGEYIDNRPVRL 340
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.5 bits (127), Expect = 4e-07 Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 5/135 (3%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVEL-----AYRLNWASAGEKRDDTPDYTIFVG 236 +GY +V F S AAA R + NG + N ++ + A+ RD +FV Sbjct: 145 KGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVK 204 Query: 237 DLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM 416 ++ D+ D L+E F Y + KV+ D + +SKG+GFV++ +A+ +++G Sbjct: 205 NIGDDIDDEKLKELF-CEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGK 262 Query: 417 PCSSRPMRIGPAANR 461 + + +G A + Sbjct: 263 SIDGKVLYVGRAQKK 277 Score = 51.6 bits (122), Expect = 2e-06 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 15/142 (10%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPN---------------VELAYRLNWASAGE 197 G+ +G+GFV + +H AA++ + +G+ + EL R E Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKE 295 Query: 198 KRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDP 377 K P I++ +L + D L+E F + S+ AKV+ + + KG+G V F Sbjct: 296 K-SRPPGVPIYIKNLDETINDEKLKEEFS-SFGSISRAKVMME--VGQGKGFGVVCFSSF 351 Query: 378 TEQARAMTEMNGMPCSSRPMRI 443 E +A+ EMNG S+P+ + Sbjct: 352 EEATKAVDEMNGRIVGSKPLHV 373 Score = 48.5 bits (114), Expect = 1e-05 Identities = 36/124 (29%), Positives = 58/124 (46%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADV 254 GYG+V F A AE L T N ++ +RL W+ ++ + IF+ +L + Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKP--FRLMWSQPDDRLRKSGVGNIFIKNLDKSI 117 Query: 255 TDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 + L F + ++ KVV D SKGY +V F RA+ MNG+ ++R Sbjct: 118 DNRALFYLFSA-FGNILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174 Query: 435 MRIG 446 + +G Sbjct: 175 VYVG 178 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/73 (34%), Positives = 40/73 (54%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 ++VGDL DVT+ ML + FR P ++ ++ D +T GYG+V F P + A+ Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGP-LRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78 Query: 405 MNGMPCSSRPMRI 443 MN + +P R+ Sbjct: 79 MNFDLINGKPFRL 91
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.5 bits (127), Expect = 4e-07 Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 5/135 (3%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVEL-----AYRLNWASAGEKRDDTPDYTIFVG 236 +GY +V F S AAA R + NG + N ++ + A+ RD +FV Sbjct: 145 KGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVK 204 Query: 237 DLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM 416 ++ D+ D L+E F Y + KV+ D + +SKG+GFV++ +A+ +++G Sbjct: 205 NIGDDIDDEKLKELF-CEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGK 262 Query: 417 PCSSRPMRIGPAANR 461 + + +G A + Sbjct: 263 SIDGKVLYVGRAQKK 277 Score = 51.6 bits (122), Expect = 2e-06 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 15/142 (10%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPN---------------VELAYRLNWASAGE 197 G+ +G+GFV + +H AA++ + +G+ + EL R E Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKE 295 Query: 198 KRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDP 377 K P I++ +L + D L+E F + S+ AKV+ + + KG+G V F Sbjct: 296 K-SRPPGVPIYIKNLDETINDEKLKEEFS-SFGSISRAKVMME--VGQGKGFGVVCFSSF 351 Query: 378 TEQARAMTEMNGMPCSSRPMRI 443 E +A+ EMNG S+P+ + Sbjct: 352 EEATKAVDEMNGRIVGSKPLHV 373 Score = 48.5 bits (114), Expect = 1e-05 Identities = 36/124 (29%), Positives = 58/124 (46%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADV 254 GYG+V F A AE L T N ++ +RL W+ ++ + IF+ +L + Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKP--FRLMWSQPDDRLRKSGVGNIFIKNLDKSI 117 Query: 255 TDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 + L F + ++ KVV D SKGY +V F RA+ MNG+ ++R Sbjct: 118 DNRALFYLFSA-FGNILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174 Query: 435 MRIG 446 + +G Sbjct: 175 VYVG 178 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/73 (34%), Positives = 40/73 (54%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 ++VGDL DVT+ ML + FR P ++ ++ D +T GYG+V F P + A+ Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGP-LRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78 Query: 405 MNGMPCSSRPMRI 443 MN + +P R+ Sbjct: 79 MNFDLINGKPFRL 91
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.5 bits (127), Expect = 4e-07 Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 5/135 (3%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVEL-----AYRLNWASAGEKRDDTPDYTIFVG 236 +GY +V F S AAA R + NG + N ++ + A+ RD +FV Sbjct: 145 KGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVK 204 Query: 237 DLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM 416 ++ D+ D L+E F Y + KV+ D + +SKG+GFV++ +A+ +++G Sbjct: 205 NIGDDIDDEKLKELF-CEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGK 262 Query: 417 PCSSRPMRIGPAANR 461 + + +G A + Sbjct: 263 SIDGKVLYVGRAQKK 277 Score = 52.0 bits (123), Expect = 1e-06 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 15/142 (10%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPN---------------VELAYRLNWASAGE 197 G+ +G+GFV + +H AA++ + +G+ + EL R E Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKE 295 Query: 198 KRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDP 377 K P I++ +L + D L+E F + S+ AKV+ + + KG+G V F Sbjct: 296 K-SRPPGVPIYIKNLDETINDEKLKEEFS-SFGSISRAKVMME--VGQGKGFGVVCFSSF 351 Query: 378 TEQARAMTEMNGMPCSSRPMRI 443 E +A+ EMNG S+P+ + Sbjct: 352 EEATKAVDEMNGRVVGSKPLHV 373 Score = 48.5 bits (114), Expect = 1e-05 Identities = 36/124 (29%), Positives = 58/124 (46%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADV 254 GYG+V F A AE L T N ++ +RL W+ ++ + IF+ +L + Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKP--FRLMWSQPDDRLRKSGVGNIFIKNLDKSI 117 Query: 255 TDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 + L F + ++ KVV D SKGY +V F RA+ MNG+ ++R Sbjct: 118 DNRALFYLFSA-FGNILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174 Query: 435 MRIG 446 + +G Sbjct: 175 VYVG 178 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/73 (34%), Positives = 40/73 (54%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 ++VGDL DVT+ ML + FR P ++ ++ D +T GYG+V F P + A+ Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGP-LRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78 Query: 405 MNGMPCSSRPMRI 443 MN + +P R+ Sbjct: 79 MNFDLINGKPFRL 91
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.5 bits (127), Expect = 4e-07 Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 5/135 (3%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVEL-----AYRLNWASAGEKRDDTPDYTIFVG 236 +GY +V F S AAA R + NG + N ++ + A+ RD +FV Sbjct: 145 KGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVK 204 Query: 237 DLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM 416 ++ D+ D L+E F Y + KV+ D + +SKG+GFV++ +A+ +++G Sbjct: 205 NIGDDIDDEKLKELF-CEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGK 262 Query: 417 PCSSRPMRIGPAANR 461 + + +G A + Sbjct: 263 SIDGKVLYVGRAQKK 277 Score = 51.6 bits (122), Expect = 2e-06 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 15/142 (10%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPN---------------VELAYRLNWASAGE 197 G+ +G+GFV + +H AA++ + +G+ + EL R E Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKE 295 Query: 198 KRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDP 377 K P I++ +L + D L+E F + S+ AKV+ + + KG+G V F Sbjct: 296 K-SRPPGVPIYIKNLDETINDEKLKEEFS-SFGSISRAKVMME--VGQGKGFGVVCFSSF 351 Query: 378 TEQARAMTEMNGMPCSSRPMRI 443 E +A+ EMNG S+P+ + Sbjct: 352 EEATKAVDEMNGRIVGSKPLHV 373 Score = 48.5 bits (114), Expect = 1e-05 Identities = 36/124 (29%), Positives = 58/124 (46%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADV 254 GYG+V F A AE L T N ++ +RL W+ ++ + IF+ +L + Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKP--FRLMWSQPDDRLRKSGVGNIFIKNLDKSI 117 Query: 255 TDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 + L F + ++ KVV D SKGY +V F RA+ MNG+ ++R Sbjct: 118 DNRALFYLFSA-FGNILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174 Query: 435 MRIG 446 + +G Sbjct: 175 VYVG 178 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/73 (34%), Positives = 40/73 (54%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 ++VGDL DVT+ ML + FR P ++ ++ D +T GYG+V F P + A+ Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGP-LRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78 Query: 405 MNGMPCSSRPMRI 443 MN + +P R+ Sbjct: 79 MNFDLINGKPFRL 91
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.5 bits (127), Expect = 4e-07 Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 5/135 (3%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVEL-----AYRLNWASAGEKRDDTPDYTIFVG 236 +GY +V F S AAA R + NG + N ++ + A+ RD +FV Sbjct: 145 KGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVK 204 Query: 237 DLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM 416 ++ D+ D L+E F Y + KV+ D + +SKG+GFV++ +A+ +++G Sbjct: 205 NIGDDIDDEKLKELF-CEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGK 262 Query: 417 PCSSRPMRIGPAANR 461 + + +G A + Sbjct: 263 SIDGKVLYVGRAQKK 277 Score = 51.6 bits (122), Expect = 2e-06 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 15/142 (10%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPN---------------VELAYRLNWASAGE 197 G+ +G+GFV + +H AA++ + +G+ + EL R E Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKE 295 Query: 198 KRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDP 377 K P I++ +L + D L+E F + S+ AKV+ + + KG+G V F Sbjct: 296 K-SRPPGVPIYIKNLDETINDEKLKEEFS-SFGSISRAKVMME--VGQGKGFGVVCFSSF 351 Query: 378 TEQARAMTEMNGMPCSSRPMRI 443 E +A+ EMNG S+P+ + Sbjct: 352 EEATKAVDEMNGRIVGSKPLHV 373 Score = 48.5 bits (114), Expect = 1e-05 Identities = 36/124 (29%), Positives = 58/124 (46%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADV 254 GYG+V F A AE L T N ++ +RL W+ ++ + IF+ +L + Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKP--FRLMWSQPDDRLRKSGVGNIFIKNLDKSI 117 Query: 255 TDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 + L F + ++ KVV D SKGY +V F RA+ MNG+ ++R Sbjct: 118 DNRALFYLFSA-FGNILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174 Query: 435 MRIG 446 + +G Sbjct: 175 VYVG 178 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/73 (34%), Positives = 40/73 (54%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 ++VGDL DVT+ ML + FR P ++ ++ D +T GYG+V F P + A+ Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGP-LRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78 Query: 405 MNGMPCSSRPMRI 443 MN + +P R+ Sbjct: 79 MNFDLINGKPFRL 91
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.5 bits (127), Expect = 4e-07 Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 5/135 (3%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVEL-----AYRLNWASAGEKRDDTPDYTIFVG 236 +GY +V F S AAA R + NG + N ++ + A+ RD +FV Sbjct: 145 KGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVK 204 Query: 237 DLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM 416 ++ D+ D L+E F Y + KV+ D + +SKG+GFV++ +A+ +++G Sbjct: 205 NIGDDIDDEKLKELF-CEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGK 262 Query: 417 PCSSRPMRIGPAANR 461 + + +G A + Sbjct: 263 SIDGKVLYVGRAQKK 277 Score = 51.6 bits (122), Expect = 2e-06 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 15/142 (10%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPN---------------VELAYRLNWASAGE 197 G+ +G+GFV + +H AA++ + +G+ + EL R E Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKE 295 Query: 198 KRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDP 377 K P I++ +L + D L+E F + S+ AKV+ + + KG+G V F Sbjct: 296 K-SRPPGVPIYIKNLDETINDEKLKEEFS-SFGSISRAKVMME--VGQGKGFGVVCFSSF 351 Query: 378 TEQARAMTEMNGMPCSSRPMRI 443 E +A+ EMNG S+P+ + Sbjct: 352 EEATKAVDEMNGRIVGSKPLHV 373 Score = 48.5 bits (114), Expect = 1e-05 Identities = 36/124 (29%), Positives = 58/124 (46%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADV 254 GYG+V F A AE L T N ++ +RL W+ ++ + IF+ +L + Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKP--FRLMWSQPDDRLRKSGVGNIFIKNLDKSI 117 Query: 255 TDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 + L F + ++ KVV D SKGY +V F RA+ MNG+ ++R Sbjct: 118 DNRALFYLFSA-FGNILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174 Query: 435 MRIG 446 + +G Sbjct: 175 VYVG 178 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/73 (34%), Positives = 40/73 (54%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 ++VGDL DVT+ ML + FR P ++ ++ D +T GYG+V F P + A+ Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGP-LRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78 Query: 405 MNGMPCSSRPMRI 443 MN + +P R+ Sbjct: 79 MNFDLINGKPFRL 91
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 53.1 bits (126), Expect = 5e-07 Identities = 30/86 (34%), Positives = 43/86 (50%) Frame = +3 Query: 216 DYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARA 395 +Y FVG LA D L+ F Y V +K++ D+ T RS+G+GFV F D A Sbjct: 7 EYRCFVGGLAWATDDRALETAFS-QYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDA 65 Query: 396 MTEMNGMPCSSRPMRIGPAANRKTTG 473 + MNG R + + A +R + G Sbjct: 66 IEGMNGQDLDGRSITVNEAQSRGSGG 91
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 53.1 bits (126), Expect = 5e-07 Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 11/125 (8%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVEL---AYRLNWASAGEKRDDT------- 212 G+ +GY FVEF + A+ L + N N E+ A RL ++S ++ + Sbjct: 495 GRPKGYAFVEFPTAEDAKEALNSCN-----NTEIEGRAIRLEFSSPSWQKGNMNARGGFN 549 Query: 213 -PDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQA 389 T+FV L+ D T+ L+E+F A++VTD+ T SKG+GFV F P E A Sbjct: 550 QQSKTLFVRGLSEDTTEETLRESFEGSI----SARIVTDRDTGSSKGFGFVDFSSP-EDA 604 Query: 390 RAMTE 404 +A E Sbjct: 605 KAAKE 609
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 53.1 bits (126), Expect = 5e-07 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 2/134 (1%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDL 242 GQ GYGFV + AE+ + T NG + + S+ RD ++V L Sbjct: 77 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN----LYVSGL 132 Query: 243 AADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM-- 416 +T L++ F Y + ++++ D++T S+G GF++F E A+ +NG Sbjct: 133 PKTMTQKELEQLFS-QYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKP 191 Query: 417 PCSSRPMRIGPAAN 458 P ++ P+ + A N Sbjct: 192 PGATEPITVKFANN 205 Score = 42.7 bits (99), Expect = 7e-04 Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 3/66 (4%) Frame = +3 Query: 264 MLQETFRVHYPSV---KGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 M QE + + S+ + K+V DK+T +S GYGFV + DP + +A+ +NG+ ++ Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT 109 Query: 435 MRIGPA 452 +++ A Sbjct: 110 IKVSYA 115 Score = 42.4 bits (98), Expect = 0.001 Identities = 25/81 (30%), Positives = 42/81 (51%) Frame = +3 Query: 219 YTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 + IFV +LA D + +L + F + +V KV+ D T + KG+GFV + E A A+ Sbjct: 276 WCIFVYNLAPDADESILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334 Query: 399 TEMNGMPCSSRPMRIGPAANR 461 +NG R +++ N+ Sbjct: 335 ASLNGYRLGDRVLQVSFKTNK 355
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 53.1 bits (126), Expect = 5e-07 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 2/134 (1%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDL 242 GQ GYGFV + AE+ + T NG + + S+ RD ++V L Sbjct: 77 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN----LYVSGL 132 Query: 243 AADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM-- 416 +T L++ F Y + ++++ D++T S+G GF++F E A+ +NG Sbjct: 133 PKTMTQKELEQLFS-QYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKP 191 Query: 417 PCSSRPMRIGPAAN 458 P ++ P+ + A N Sbjct: 192 PGATEPITVKFANN 205 Score = 42.7 bits (99), Expect = 7e-04 Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 3/66 (4%) Frame = +3 Query: 264 MLQETFRVHYPSV---KGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 M QE + + S+ + K+V DK+T +S GYGFV + DP + +A+ +NG+ ++ Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT 109 Query: 435 MRIGPA 452 +++ A Sbjct: 110 IKVSYA 115 Score = 42.4 bits (98), Expect = 0.001 Identities = 25/81 (30%), Positives = 42/81 (51%) Frame = +3 Query: 219 YTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 + IFV +LA D + +L + F + +V KV+ D T + KG+GFV + E A A+ Sbjct: 276 WCIFVYNLAPDADESILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334 Query: 399 TEMNGMPCSSRPMRIGPAANR 461 +NG R +++ N+ Sbjct: 335 ASLNGYRLGDRVLQVSFKTNK 355
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 53.1 bits (126), Expect = 5e-07 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 2/134 (1%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDL 242 GQ GYGFV + AE+ + T NG + + S+ RD ++V L Sbjct: 77 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN----LYVSGL 132 Query: 243 AADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM-- 416 +T L++ F Y + ++++ D++T S+G GF++F E A+ +NG Sbjct: 133 PKTMTQKELEQLFS-QYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKP 191 Query: 417 PCSSRPMRIGPAAN 458 P ++ P+ + A N Sbjct: 192 PGATEPITVKFANN 205 Score = 42.7 bits (99), Expect = 7e-04 Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 3/66 (4%) Frame = +3 Query: 264 MLQETFRVHYPSV---KGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 M QE + + S+ + K+V DK+T +S GYGFV + DP + +A+ +NG+ ++ Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT 109 Query: 435 MRIGPA 452 +++ A Sbjct: 110 IKVSYA 115 Score = 42.4 bits (98), Expect = 0.001 Identities = 25/81 (30%), Positives = 42/81 (51%) Frame = +3 Query: 219 YTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 + IFV +LA D + +L + F + +V KV+ D T + KG+GFV + E A A+ Sbjct: 276 WCIFVYNLAPDADESILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334 Query: 399 TEMNGMPCSSRPMRIGPAANR 461 +NG R +++ N+ Sbjct: 335 ASLNGYRLGDRVLQVSFKTNK 355
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 53.1 bits (126), Expect = 5e-07 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 2/134 (1%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDL 242 GQ GYGFV + AE+ + T NG + + S+ RD ++V L Sbjct: 77 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN----LYVSGL 132 Query: 243 AADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM-- 416 +T L++ F Y + ++++ D++T S+G GF++F E A+ +NG Sbjct: 133 PKTMTQKELEQLFS-QYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKP 191 Query: 417 PCSSRPMRIGPAAN 458 P ++ P+ + A N Sbjct: 192 PGATEPITVKFANN 205 Score = 42.7 bits (99), Expect = 7e-04 Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 3/66 (4%) Frame = +3 Query: 264 MLQETFRVHYPSV---KGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 M QE + + S+ + K+V DK+T +S GYGFV + DP + +A+ +NG+ ++ Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT 109 Query: 435 MRIGPA 452 +++ A Sbjct: 110 IKVSYA 115 Score = 42.4 bits (98), Expect = 0.001 Identities = 25/81 (30%), Positives = 42/81 (51%) Frame = +3 Query: 219 YTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 + IFV +LA D + +L + F + +V KV+ D T + KG+GFV + E A A+ Sbjct: 277 WCIFVYNLAPDADESILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 335 Query: 399 TEMNGMPCSSRPMRIGPAANR 461 +NG R +++ N+ Sbjct: 336 ASLNGYRLGDRVLQVSFKTNK 356
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 52.8 bits (125), Expect = 7e-07 Identities = 34/118 (28%), Positives = 58/118 (49%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDL 242 G GYGFV+F S A A R + NG + N + ++++A G + D ++V +L Sbjct: 116 GYSYGYGFVDFGSEADALRAINNLNGITVRNKRI--KVSFARPG--GEQLRDTNLYVTNL 171 Query: 243 AADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM 416 + +TD L ET Y + ++ DK T +G F++F E A++ +N + Sbjct: 172 SRSITDEQL-ETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAISALNNV 228 Score = 41.6 bits (96), Expect = 0.002 Identities = 29/111 (26%), Positives = 50/111 (45%) Frame = +3 Query: 111 AERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVH 290 ++R Q N + +A N ++G T + V L D+ D L FR Sbjct: 45 SQRYYQNNNCGLGSVGNMANSTNSLNSGTNNSGT---NLIVNYLPQDMQDRELYSLFRTI 101 Query: 291 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI 443 P + +++ D T S GYGFV FG + RA+ +NG+ ++ +++ Sbjct: 102 GP-INTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKV 151
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 52.8 bits (125), Expect = 7e-07 Identities = 30/86 (34%), Positives = 43/86 (50%) Frame = +3 Query: 216 DYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARA 395 +Y FVG LA D L+ F Y V +K++ D+ T RS+G+GFV F D A Sbjct: 7 EYRCFVGGLAWATDDRALETAF-AQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDA 65 Query: 396 MTEMNGMPCSSRPMRIGPAANRKTTG 473 + MNG R + + A +R + G Sbjct: 66 IEGMNGQDLDGRSITVNEAQSRGSGG 91
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 52.8 bits (125), Expect = 7e-07 Identities = 28/86 (32%), Positives = 44/86 (51%) Frame = +3 Query: 216 DYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARA 395 +Y FVG LA D L++ F + + +K++ D+ T RS+G+GFV F D A Sbjct: 5 EYRCFVGGLAWATNDESLEQAFS-QFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDA 63 Query: 396 MTEMNGMPCSSRPMRIGPAANRKTTG 473 + MNG R + + A +R + G Sbjct: 64 IEGMNGQELDGRNITVNEAQSRGSGG 89
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 52.8 bits (125), Expect = 7e-07 Identities = 32/114 (28%), Positives = 58/114 (50%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADV 254 GY FV+F S ++R ++ NG + N L ++++A G + D ++V +L + Sbjct: 169 GYAFVDFTSEMDSQRAIKVLNGITVRNKRL--KVSYARPGG--ESIKDTNLYVTNLPRTI 224 Query: 255 TDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM 416 TD L F Y S+ ++ DK+T R +G FV++ E A++ +N + Sbjct: 225 TDDQLDTIFG-KYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNV 277 Score = 36.6 bits (83), Expect = 0.050 Identities = 22/76 (28%), Positives = 37/76 (48%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 + V L D+TD L FR P + +++ D T S GY FV F + RA+ Sbjct: 129 LIVNYLPQDMTDRELYALFRAIGP-INTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKV 187 Query: 405 MNGMPCSSRPMRIGPA 452 +NG+ ++ +++ A Sbjct: 188 LNGITVRNKRLKVSYA 203
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 52.8 bits (125), Expect = 7e-07 Identities = 32/114 (28%), Positives = 58/114 (50%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADV 254 GY FV+F S ++R ++ NG + N L ++++A G + D ++V +L + Sbjct: 167 GYAFVDFTSEMDSQRAIKVLNGITVRNKRL--KVSYARPGG--ESIKDTNLYVTNLPRTI 222 Query: 255 TDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM 416 TD L F Y S+ ++ DK+T R +G FV++ E A++ +N + Sbjct: 223 TDDQLDTIFG-KYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNV 275 Score = 36.6 bits (83), Expect = 0.050 Identities = 22/76 (28%), Positives = 37/76 (48%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 + V L D+TD L FR P + +++ D T S GY FV F + RA+ Sbjct: 127 LIVNYLPQDMTDRELYALFRAIGP-INTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKV 185 Query: 405 MNGMPCSSRPMRIGPA 452 +NG+ ++ +++ A Sbjct: 186 LNGITVRNKRLKVSYA 201
>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog| Length = 300 Score = 52.4 bits (124), Expect = 9e-07 Identities = 31/98 (31%), Positives = 50/98 (51%) Frame = +3 Query: 114 ERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHY 293 +R LQ +N + P++ +D P TIF+G L D+ + LQ+ F V + Sbjct: 86 DRRLQNWNPNVDPHI--------------KDTDPYRTIFIGRLPYDLDEIELQKYF-VKF 130 Query: 294 PSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEM 407 ++ ++V DK+T +SKGY F+ F DP A E+ Sbjct: 131 GEIEKIRIVKDKITQKSKGYAFIVFKDPISSKMAFKEI 168
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 52.4 bits (124), Expect = 9e-07 Identities = 28/83 (33%), Positives = 45/83 (54%) Frame = +3 Query: 195 EKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGD 374 E+ +PD +FVG+L+ +V L + F +V+ +V+ DK+T RS+G+GFV Sbjct: 91 ERNSFSPDLKLFVGNLSFNVDSAQLAQLFE-SAGNVEMVEVIYDKVTGRSRGFGFVTMST 149 Query: 375 PTEQARAMTEMNGMPCSSRPMRI 443 E A + NG RP+R+ Sbjct: 150 AAEVEAAAQQFNGYEFEGRPLRV 172 Score = 47.4 bits (111), Expect = 3e-05 Identities = 27/83 (32%), Positives = 43/83 (51%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 ++VG+L+ V D L+ F V+ A+V+ D+ + RSKG+GFV E +A+ Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVE-ARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317 Query: 405 MNGMPCSSRPMRIGPAANRKTTG 473 +NG R +R+ A R G Sbjct: 318 LNGADLDGRQIRVSEAEARPPRG 340
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 52.0 bits (123), Expect = 1e-06 Identities = 31/114 (27%), Positives = 59/114 (51%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADV 254 GY FV+FA+ ++R +++ NG + N L ++++A G + D ++V +L + Sbjct: 152 GYAFVDFAAETDSQRAIKSLNGITVRNKRL--KVSYARPG--GESIKDTNLYVTNLPRTI 207 Query: 255 TDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM 416 TD L F Y + ++ DK+T + +G FV+F E A++ +N + Sbjct: 208 TDDQLDTIFG-KYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALNNV 260 Score = 39.7 bits (91), Expect = 0.006 Identities = 23/76 (30%), Positives = 38/76 (50%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 + V L D+TD L FR P + +++ D T S GY FV F T+ RA+ Sbjct: 112 LIVNYLPQDMTDRELYALFRTIGP-INTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKS 170 Query: 405 MNGMPCSSRPMRIGPA 452 +NG+ ++ +++ A Sbjct: 171 LNGITVRNKRLKVSYA 186
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 52.0 bits (123), Expect = 1e-06 Identities = 28/82 (34%), Positives = 42/82 (51%) Frame = +3 Query: 216 DYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARA 395 +Y FVG LA ++ L+ F Y + +KV+TD+ T RS+G+GFV F A Sbjct: 7 EYRCFVGGLAWATSNESLENAF-ASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDA 65 Query: 396 MTEMNGMPCSSRPMRIGPAANR 461 + MNG R + + A +R Sbjct: 66 IENMNGKELDGRNITVNQAQSR 87
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 52.0 bits (123), Expect = 1e-06 Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 25/158 (15%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDT---------- 212 G+ +G+GFV +S + E Q FNG + L R+N KR+D Sbjct: 129 GRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPL--RVNAGPPPPKREDGFSRGPRSSFG 186 Query: 213 ---------------PDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSK 347 ++VG+L+ V D L+ F V+ A+V+ D+ + RSK Sbjct: 187 SSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVE-ARVIYDRDSGRSK 245 Query: 348 GYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 461 G+GFV + E A+ ++G R +R+ A R Sbjct: 246 GFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283 Score = 49.3 bits (116), Expect = 7e-06 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 2/88 (2%) Frame = +3 Query: 216 DYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARA 395 D +FVG+L +V L + F +V+ +V+ DK+T RS+G+GFV +E A Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFE-SAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAA 148 Query: 396 MTEMNGMPCSSRPMRI--GPAANRKTTG 473 + NG RP+R+ GP ++ G Sbjct: 149 AQQFNGYELDGRPLRVNAGPPPPKREDG 176
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 51.6 bits (122), Expect = 2e-06 Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 14/141 (9%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVL-----QTFNGQMMPNVELA---------YRLNWASAGEK 200 G+ +GYG+V+F + AA+ + + +G+M+ N++L+ Y A Sbjct: 301 GRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMV-NLDLSNPRPANPQPYAQQRAGNFGD 359 Query: 201 RDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPT 380 + P T+FVG+L+ + T+ L F ++ ++ TD + R KG+G+V F D Sbjct: 360 QLSEPSDTVFVGNLSFNATEDDLSTAFG-GCGDIQSIRLPTDPQSGRLKGFGYVTFSD-I 417 Query: 381 EQARAMTEMNGMPCSSRPMRI 443 + A+ EMNG + RP R+ Sbjct: 418 DSAKKCVEMNGHFIAGRPCRL 438 Score = 50.4 bits (119), Expect = 3e-06 Identities = 29/71 (40%), Positives = 41/71 (57%) Frame = +3 Query: 201 RDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPT 380 +D T+FVG L+ +V D L + F Y ++ GA+V+ D + RSKGYG+V F P Sbjct: 257 QDSNETCTVFVGRLSWNVDDQWLGQEFE-EYGTIVGARVIMDGQSGRSKGYGYVDFETP- 314 Query: 381 EQARAMTEMNG 413 E A+A NG Sbjct: 315 EAAKAAVAANG 325
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 51.6 bits (122), Expect = 2e-06 Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 4/136 (2%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPN--VELAYRLNWASAGEKRDDTPDYTIFVG 236 G GYGFV + + AER + T NG + + ++++Y A + D +++ Sbjct: 58 GHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSY------ARPSSEVIKDANLYIS 111 Query: 237 DLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNG- 413 L +T +++ F + + ++V+ D+ T S+G F++F +E A+T G Sbjct: 112 GLPRTMTQKDVEDMFS-RFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIGH 170 Query: 414 -MPCSSRPMRIGPAAN 458 P SS P+ + AAN Sbjct: 171 KPPGSSEPITVKFAAN 186 Score = 40.8 bits (94), Expect = 0.003 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 3/66 (4%) Frame = +3 Query: 264 MLQETFRVHYPS---VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 M QE R + S V+ AK++ DK+ S GYGFV + + RA++ +NG+ S+ Sbjct: 31 MTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKT 90 Query: 435 MRIGPA 452 +++ A Sbjct: 91 IKVSYA 96 Score = 38.9 bits (89), Expect = 0.010 Identities = 22/81 (27%), Positives = 41/81 (50%) Frame = +3 Query: 219 YTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 + IF+ +L D + +L + F + +V KV+ D T + KG+GFV + E A A+ Sbjct: 244 WCIFIYNLGQDADEGILWQMFGP-FGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAI 302 Query: 399 TEMNGMPCSSRPMRIGPAANR 461 +NG + +++ N+ Sbjct: 303 ASLNGYRLGDKILQVSFKTNK 323
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 51.2 bits (121), Expect = 2e-06 Identities = 28/82 (34%), Positives = 43/82 (52%) Frame = +3 Query: 216 DYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARA 395 +Y FVG LA + L++ F ++ V +KV+TD+ T RS+G+GFV F A Sbjct: 7 EYRCFVGGLAWATNNETLEQAF-ANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDA 65 Query: 396 MTEMNGMPCSSRPMRIGPAANR 461 + MNG R + + A +R Sbjct: 66 IENMNGKELDGRNITVNQAQSR 87
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 51.2 bits (121), Expect = 2e-06 Identities = 32/117 (27%), Positives = 55/117 (47%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDL 242 GQ GYGFV + AE+ + T NG + + S+ RD ++V L Sbjct: 84 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN----LYVSGL 139 Query: 243 AADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNG 413 +T L++ F Y + ++++ D++T S+G GF++F E A+ +NG Sbjct: 140 PKTMTQKELEQLFS-QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195 Score = 46.2 bits (108), Expect = 6e-05 Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 3/66 (4%) Frame = +3 Query: 264 MLQETFRVHYPSV---KGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 M QE FR + S+ + K+V DK+T +S GYGFV + DP + +A+ +NG+ ++ Sbjct: 57 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT 116 Query: 435 MRIGPA 452 +++ A Sbjct: 117 IKVSYA 122 Score = 40.8 bits (94), Expect = 0.003 Identities = 24/81 (29%), Positives = 42/81 (51%) Frame = +3 Query: 219 YTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 + IFV +L+ D + +L + F + +V KV+ D T + KG+GFV + E A A+ Sbjct: 297 WCIFVYNLSPDSDESVLWQLFGP-FGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 355 Query: 399 TEMNGMPCSSRPMRIGPAANR 461 +NG R +++ N+ Sbjct: 356 ASLNGYRLGDRVLQVSFKTNK 376
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 51.2 bits (121), Expect = 2e-06 Identities = 32/117 (27%), Positives = 55/117 (47%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDL 242 GQ GYGFV + AE+ + T NG + + S+ RD ++V L Sbjct: 89 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN----LYVSGL 144 Query: 243 AADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNG 413 +T L++ F Y + ++++ D++T S+G GF++F E A+ +NG Sbjct: 145 PKTMTQKELEQLFS-QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200 Score = 46.2 bits (108), Expect = 6e-05 Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 3/66 (4%) Frame = +3 Query: 264 MLQETFRVHYPSV---KGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 M QE FR + S+ + K+V DK+T +S GYGFV + DP + +A+ +NG+ ++ Sbjct: 62 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT 121 Query: 435 MRIGPA 452 +++ A Sbjct: 122 IKVSYA 127 Score = 40.8 bits (94), Expect = 0.003 Identities = 24/81 (29%), Positives = 42/81 (51%) Frame = +3 Query: 219 YTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 + IFV +L+ D + +L + F + +V KV+ D T + KG+GFV + E A A+ Sbjct: 302 WCIFVYNLSPDSDESVLWQLFGP-FGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 360 Query: 399 TEMNGMPCSSRPMRIGPAANR 461 +NG R +++ N+ Sbjct: 361 ASLNGYRLGDRVLQVSFKTNK 381
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 51.2 bits (121), Expect = 2e-06 Identities = 37/139 (26%), Positives = 65/139 (46%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADV 254 GY ++ F++ A R ++ N P + R+ ++ + IF+ +L A + Sbjct: 90 GYAYINFSNPNDAYRAMEALN--YTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASI 147 Query: 255 TDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 + L ETF + ++ KV D +T RSKGYGFV+F A+ ++NGM + + Sbjct: 148 DNKALFETFS-SFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQ 205 Query: 435 MRIGPAANRKTTGVXERVP 491 + +G R+ E P Sbjct: 206 VFVGHFIRRQERARDENTP 224 Score = 50.4 bits (119), Expect = 3e-06 Identities = 35/137 (25%), Positives = 70/137 (51%), Gaps = 4/137 (2%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVEL---AYRLNWASAGEKRDDTPDYT-IF 230 G+ +GYGFV+F +A+ + NG +M + ++ + A ++ TP +T ++ Sbjct: 173 GRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVY 232 Query: 231 VGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMN 410 V +L ++ + L++TF + + A V+ D+ + S+ +GFV F A A+ +MN Sbjct: 233 VKNLPKEIGEDELRKTFG-KFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKMN 290 Query: 411 GMPCSSRPMRIGPAANR 461 G+ + +G A + Sbjct: 291 GISLGDDVLYVGRAQKK 307 Score = 50.1 bits (118), Expect = 4e-06 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 14/148 (9%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNG-QMMPNVELAYRLNWASAGEKR------------ 203 G + +GFV F AA ++ NG + +V R S E+ Sbjct: 266 GNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINR 325 Query: 204 -DDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPT 380 + + +++ +L V D L+E F Y +V +KV+ + M S+G+GFV + +P Sbjct: 326 FEKSQGANLYLKNLDDSVDDEKLKEMFS-EYGNVTSSKVMLNPQGM-SRGFGFVAYSNPE 383 Query: 381 EQARAMTEMNGMPCSSRPMRIGPAANRK 464 E RA++EMNG +P+ I A ++ Sbjct: 384 EALRALSEMNGKMIGRKPLYIALAQRKE 411 Score = 49.7 bits (117), Expect = 6e-06 Identities = 27/77 (35%), Positives = 43/77 (55%) Frame = +3 Query: 213 PDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQAR 392 P+ +++ GDL VT+ L + F+ H +V +V D+ RS GY ++ F +P + R Sbjct: 47 PNSSLYAGDLDPKVTEAHLFDLFK-HVANVVSVRVCRDQ-NRRSLGYAYINFSNPNDAYR 104 Query: 393 AMTEMNGMPCSSRPMRI 443 AM +N P RP+RI Sbjct: 105 AMEALNYTPLFDRPIRI 121
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 51.2 bits (121), Expect = 2e-06 Identities = 32/117 (27%), Positives = 55/117 (47%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDL 242 GQ GYGFV + AE+ + T NG + + S+ RD ++V L Sbjct: 77 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN----LYVSGL 132 Query: 243 AADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNG 413 +T L++ F Y + ++++ D++T S+G GF++F E A+ +NG Sbjct: 133 PKTMTQKELEQLFS-QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188 Score = 46.2 bits (108), Expect = 6e-05 Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 3/66 (4%) Frame = +3 Query: 264 MLQETFRVHYPSV---KGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 M QE FR + S+ + K+V DK+T +S GYGFV + DP + +A+ +NG+ ++ Sbjct: 50 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT 109 Query: 435 MRIGPA 452 +++ A Sbjct: 110 IKVSYA 115 Score = 40.8 bits (94), Expect = 0.003 Identities = 24/81 (29%), Positives = 42/81 (51%) Frame = +3 Query: 219 YTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 + IFV +L+ D + +L + F + +V KV+ D T + KG+GFV + E A A+ Sbjct: 290 WCIFVYNLSPDSDESVLWQLFGP-FGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 348 Query: 399 TEMNGMPCSSRPMRIGPAANR 461 +NG R +++ N+ Sbjct: 349 ASLNGYRLGDRVLQVSFKTNK 369
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 50.4 bits (119), Expect = 3e-06 Identities = 27/81 (33%), Positives = 45/81 (55%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 ++FVG++ + T+ L++ F SV ++V D+ T + KGYGF ++ D AM Sbjct: 17 SVFVGNIPYEATEEQLKDIFS-EVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 402 EMNGMPCSSRPMRIGPAANRK 464 +NG S R +R+ AA+ K Sbjct: 76 NLNGREFSGRALRVDNAASEK 96
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 50.4 bits (119), Expect = 3e-06 Identities = 27/81 (33%), Positives = 45/81 (55%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 ++FVG++ + T+ L++ F SV ++V D+ T + KGYGF ++ D AM Sbjct: 17 SVFVGNIPYEATEEQLKDIFS-EVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 402 EMNGMPCSSRPMRIGPAANRK 464 +NG S R +R+ AA+ K Sbjct: 76 NLNGREFSGRALRVDNAASEK 96
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 50.1 bits (118), Expect = 4e-06 Identities = 27/76 (35%), Positives = 40/76 (52%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 +FVG L+ D + L++ F Y + VV D+ T RS+G+GFV F + + AM Sbjct: 8 LFVGGLSFDTNEQALEQVFS-KYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 405 MNGMPCSSRPMRIGPA 452 MNG R +R+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 50.1 bits (118), Expect = 4e-06 Identities = 27/76 (35%), Positives = 40/76 (52%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 +FVG L+ D + L++ F Y + VV D+ T RS+G+GFV F + + AM Sbjct: 8 LFVGGLSFDTNEQSLEQVFS-KYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 405 MNGMPCSSRPMRIGPA 452 MNG R +R+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 50.1 bits (118), Expect = 4e-06 Identities = 27/76 (35%), Positives = 40/76 (52%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 +FVG L+ D + L++ F Y + VV D+ T RS+G+GFV F + + AM Sbjct: 8 LFVGGLSFDTNEQALEQVFS-KYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 405 MNGMPCSSRPMRIGPA 452 MNG R +R+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 50.1 bits (118), Expect = 4e-06 Identities = 27/76 (35%), Positives = 40/76 (52%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 +FVG L+ D + L++ F Y + VV D+ T RS+G+GFV F + + AM Sbjct: 8 LFVGGLSFDTNEQSLEQVFS-KYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 405 MNGMPCSSRPMRIGPA 452 MNG R +R+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 50.1 bits (118), Expect = 4e-06 Identities = 27/76 (35%), Positives = 40/76 (52%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 +FVG L+ D + L++ F Y + VV D+ T RS+G+GFV F + + AM Sbjct: 8 LFVGGLSFDTNEQALEQVFS-KYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 405 MNGMPCSSRPMRIGPA 452 MNG R +R+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 49.7 bits (117), Expect = 6e-06 Identities = 27/81 (33%), Positives = 45/81 (55%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 ++FVG++ + T+ L++ F P V ++V D+ T + KGYGF ++ D AM Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVS-FRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 402 EMNGMPCSSRPMRIGPAANRK 464 +NG S R +R+ AA+ K Sbjct: 76 NLNGREFSGRALRVDNAASEK 96
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 49.7 bits (117), Expect = 6e-06 Identities = 27/81 (33%), Positives = 45/81 (55%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 ++FVG++ + T+ L++ F P V ++V D+ T + KGYGF ++ D AM Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVS-FRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 402 EMNGMPCSSRPMRIGPAANRK 464 +NG S R +R+ AA+ K Sbjct: 76 NLNGREFSGRALRVDNAASEK 96
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 49.7 bits (117), Expect = 6e-06 Identities = 27/81 (33%), Positives = 45/81 (55%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 ++FVG++ + T+ L++ F P V ++V D+ T + KGYGF ++ D AM Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVS-FRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 402 EMNGMPCSSRPMRIGPAANRK 464 +NG S R +R+ AA+ K Sbjct: 76 NLNGREFSGRALRVDNAASEK 96
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 49.7 bits (117), Expect = 6e-06 Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQM-MPNVELAYRLNWASAGEKRDDTPDYTIFVGD 239 GQ QG FV++A+ A+R ++ + Q+ +P ++ +A +R T ++ +FVG Sbjct: 158 GQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGS 217 Query: 240 LAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNG 413 L T+ ++E F + + V+ ++ D+ +S+G GFVK+ A+ +NG Sbjct: 218 LNKQATEKEVEEIF-LQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNG 273
>YHH5_YEAST (P38760) Hypothetical 75.9 kDa protein in SPO13-ARG4 intergenic| region Length = 659 Score = 49.7 bits (117), Expect = 6e-06 Identities = 26/77 (33%), Positives = 45/77 (58%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 ++F+G+L + VT+ ML++ F+ Y S + AKV D +T +S GYG++ F D + A Sbjct: 112 SLFIGNLKSTVTEEMLRKIFK-RYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDAESARK 170 Query: 402 EMNGMPCSSRPMRIGPA 452 E N + ++I P+ Sbjct: 171 EFNYTVFFGQEVKIMPS 187
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 49.7 bits (117), Expect = 6e-06 Identities = 27/81 (33%), Positives = 45/81 (55%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 ++FVG++ + T+ L++ F P V ++V D+ T + KGYGF ++ D AM Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVS-FRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 402 EMNGMPCSSRPMRIGPAANRK 464 +NG S R +R+ AA+ K Sbjct: 76 NLNGREFSGRALRVDNAASEK 96
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 49.7 bits (117), Expect = 6e-06 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASA---GEKRDDTPDYTIFV 233 G+ +G+ F+EF+S A+ + + N + + + G + T+FV Sbjct: 447 GRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQGGGPQGGGRGGSAQSKTLFV 506 Query: 234 GDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 L+ D T+ L+E F A++VTD+ T SKG+GFV F E A+A E Sbjct: 507 RGLSEDTTEETLKEAF----DGSVNARIVTDRDTGASKGFGFVDF-STAEDAKAAKE 558 Score = 41.6 bits (96), Expect = 0.002 Identities = 36/166 (21%), Positives = 70/166 (42%), Gaps = 10/166 (6%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMM---PNVELAYRLNWASAGEKRDDTPDYTIFV 233 G + +G+V+F+S E+ L+ +++ +E A + E + + T+FV Sbjct: 269 GNSKKFGYVDFSSEEEVEKALKLTGKKILGTEVKIEKAMAFDKNKTAENKKERDSRTLFV 328 Query: 234 GDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNG 413 ++ T LQE F + K ++ T K +KG +V+F + E +A+ E G Sbjct: 329 KNIPYSTTVEELQEIFE----NAKDIRIPTGK-DGSNKGIAYVEFSNEDEANKALEEKQG 383 Query: 414 MPCSSRPMRIG-------PAANRKTTGVXERVPIXNTNTQGAXXDN 530 R + + + N+K +V + N + A D+ Sbjct: 384 AEIEGRSIFVDFTGEKSQNSGNKKGPEGDSKVLVVNNLSYSATEDS 429
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 48.5 bits (114), Expect = 1e-05 Identities = 39/133 (29%), Positives = 58/133 (43%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADV 254 G+GF EF E Q N + + R+N AS + +FVG+L V Sbjct: 53 GFGFCEFLHEQDVEYACQILNQVKLFGKPI--RVNRASQDRGVNTLIGANLFVGNLDPLV 110 Query: 255 TDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 + +L +TF VK +V D+ RSKGYGFV + A+ MN ++P Sbjct: 111 DERVLYDTFSALGQLVKAPQVARDE-NGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKP 169 Query: 435 MRIGPAANRKTTG 473 + + A R+ G Sbjct: 170 ITVSYAFKREGKG 182 Score = 33.9 bits (76), Expect = 0.33 Identities = 23/86 (26%), Positives = 40/86 (46%) Frame = +3 Query: 198 KRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDP 377 + D D TI++G+L VTD +L E P V + D++ G+GF +F Sbjct: 4 REDRNQDATIYLGNLDEKVTDSILFELCLQAGP-VVNIHIPRDRVRNSHNGFGFCEFLHE 62 Query: 378 TEQARAMTEMNGMPCSSRPMRIGPAA 455 + A +N + +P+R+ A+ Sbjct: 63 QDVEYACQILNQVKLFGKPIRVNRAS 88 Score = 33.1 bits (74), Expect = 0.56 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPN--VELAYRLNWASAGEKRDD 209 G+ +GYGFV + S A+ ++ N Q + N + ++Y GE+ D Sbjct: 137 GRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGERHGD 187
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 48.5 bits (114), Expect = 1e-05 Identities = 33/118 (27%), Positives = 55/118 (46%) Frame = +3 Query: 123 LQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSV 302 +QT + PN LN ++G + IFVG + + L++ F Y SV Sbjct: 1 MQTDSLSPSPNPVSPVPLNNPTSGPRYGTVIPNRIFVGGIDFKTNENDLRKFFS-QYGSV 59 Query: 303 KGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGV 476 K K+V D+ + SKGYGF+ F + + + E + + + IGPA ++ G+ Sbjct: 60 KEVKIVNDRAGV-SKGYGFITFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQVGI 116
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 48.1 bits (113), Expect = 2e-05 Identities = 29/117 (24%), Positives = 56/117 (47%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDL 242 GQ GYGFV ++ A++ + T NG + + S+ RD ++V L Sbjct: 77 GQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDAN----LYVSGL 132 Query: 243 AADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNG 413 ++ +++ F Y + ++++ D++T S+G GF++F E A+ +NG Sbjct: 133 PKTMSQKEMEQLFS-QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188 Score = 45.8 bits (107), Expect = 8e-05 Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 3/66 (4%) Frame = +3 Query: 264 MLQETFRVHYPSV---KGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 M Q+ F+ + S+ + K+V DK+T +S GYGFV + DP + +A+ +NG+ ++ Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKT 109 Query: 435 MRIGPA 452 +++ A Sbjct: 110 IKVSYA 115 Score = 38.9 bits (89), Expect = 0.010 Identities = 22/75 (29%), Positives = 40/75 (53%) Frame = +3 Query: 219 YTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 + IFV +L+ + + +L + F + +V KV+ D T + KG+GFV + E A A+ Sbjct: 284 WCIFVYNLSPEADESVLWQLFGP-FGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342 Query: 399 TEMNGMPCSSRPMRI 443 +NG R +++ Sbjct: 343 ASLNGYRLGERVLQV 357
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 48.1 bits (113), Expect = 2e-05 Identities = 28/82 (34%), Positives = 41/82 (50%) Frame = +3 Query: 216 DYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARA 395 +Y FVG LA TD ET + + +K++ D+ T RS+G+GFV F D A Sbjct: 7 EYRCFVGGLAW-ATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDA 65 Query: 396 MTEMNGMPCSSRPMRIGPAANR 461 + MNG R + + A +R Sbjct: 66 IEGMNGQDLDGRSITVNEAQSR 87
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 47.8 bits (112), Expect = 2e-05 Identities = 26/81 (32%), Positives = 46/81 (56%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 +I+VG+L+ DV++ L F Y SVK ++ TD+ T R +G+GFV+ E+ A+ Sbjct: 2 SIYVGNLSYDVSEADLTAVF-AEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIE 60 Query: 402 EMNGMPCSSRPMRIGPAANRK 464 ++G R +++ A R+ Sbjct: 61 ALDGAEWMGRDLKVNKAKPRE 81
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 47.4 bits (111), Expect = 3e-05 Identities = 26/76 (34%), Positives = 40/76 (52%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 +FVG L + + L++ F P + VV D+ T RS+G+GF+ F +P + AM Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGP-ISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66 Query: 405 MNGMPCSSRPMRIGPA 452 MNG R +R+ A Sbjct: 67 MNGESLDGRQIRVDHA 82
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 47.0 bits (110), Expect = 4e-05 Identities = 26/76 (34%), Positives = 40/76 (52%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 +FVG L + + L++ F P + VV D+ T RS+G+GF+ F +P + AM Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGP-ISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66 Query: 405 MNGMPCSSRPMRIGPA 452 MNG R +R+ A Sbjct: 67 MNGESLDGRQIRVDHA 82
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 47.0 bits (110), Expect = 4e-05 Identities = 29/117 (24%), Positives = 55/117 (47%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDL 242 GQ GYGFV ++ A++ + T NG + + S+ RD ++V L Sbjct: 77 GQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDAN----LYVSGL 132 Query: 243 AADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNG 413 ++ +++ F Y + ++++ D+ T S+G GF++F E A+ +NG Sbjct: 133 PKTMSQKEMEQLFS-QYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 188 Score = 45.8 bits (107), Expect = 8e-05 Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 3/66 (4%) Frame = +3 Query: 264 MLQETFRVHYPSV---KGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRP 434 M Q+ F+ + S+ + K+V DK+T +S GYGFV + DP + +A+ +NG+ ++ Sbjct: 50 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKT 109 Query: 435 MRIGPA 452 +++ A Sbjct: 110 IKVSYA 115 Score = 38.9 bits (89), Expect = 0.010 Identities = 22/75 (29%), Positives = 40/75 (53%) Frame = +3 Query: 219 YTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 + IFV +L+ + + +L + F + +V KV+ D T + KG+GFV + E A A+ Sbjct: 284 WCIFVYNLSPEADESVLWQLFGP-FGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342 Query: 399 TEMNGMPCSSRPMRI 443 +NG R +++ Sbjct: 343 ASLNGYRLGERVLQV 357
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 46.6 bits (109), Expect = 5e-05 Identities = 33/118 (27%), Positives = 54/118 (45%) Frame = +3 Query: 123 LQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSV 302 +QT + PN LN ++ + IFVG + + L++ F Y SV Sbjct: 1 MQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFS-QYGSV 59 Query: 303 KGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGV 476 K K+V D+ + SKGYGFV F + + + E + + + IGPA ++ G+ Sbjct: 60 KEVKIVNDRAGV-SKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQVGI 116
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 46.6 bits (109), Expect = 5e-05 Identities = 33/118 (27%), Positives = 54/118 (45%) Frame = +3 Query: 123 LQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSV 302 +QT + PN LN ++ + IFVG + + L++ F Y SV Sbjct: 1 MQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFS-QYGSV 59 Query: 303 KGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGV 476 K K+V D+ + SKGYGFV F + + + E + + + IGPA ++ G+ Sbjct: 60 KEVKIVNDRAGV-SKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQVGI 116
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 46.6 bits (109), Expect = 5e-05 Identities = 33/127 (25%), Positives = 63/127 (49%) Frame = +3 Query: 84 FVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADVTDY 263 +V F +AA + L+ Q+ + R++ AS RD ++FVG+L V + Sbjct: 247 YVVFKEESAATQALKRNGAQIADGFRI--RVDLASETSSRDKR---SVFVGNLPYKVEES 301 Query: 264 MLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI 443 +++ F + S+ ++V DKMT KG+G+V F + T+ ++N R +R+ Sbjct: 302 AIEKHF-LDCGSIMAVRIVRDKMTGIGKGFGYVLF-ENTDSVHLALKLNNSELMGRKLRV 359 Query: 444 GPAANRK 464 + N++ Sbjct: 360 MRSVNKE 366
>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1| Length = 476 Score = 46.2 bits (108), Expect = 6e-05 Identities = 34/114 (29%), Positives = 62/114 (54%), Gaps = 5/114 (4%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMM-PNVELAYRLNWA---SAGEKRD-DTPDYTIFVG 236 +G FV+FA + A R ++ +GQ + PN ++ A S+G RD + + T Sbjct: 66 KGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFV 125 Query: 237 DLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 + T+ L+E F+V Y ++ V+ +K+T SKG G+V++ P++ A+A+ Sbjct: 126 MIPKSYTEEDLREKFKV-YGDIEYCSVIKNKVTGESKGLGYVRYLKPSQAAQAI 178 Score = 45.1 bits (105), Expect = 1e-04 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 6/94 (6%) Frame = +3 Query: 204 DDTPDYTIFVGDLAADVTDYMLQETFRVHYP---SVKGAKVVTDKMTMRSKGYGFVKFGD 374 D+ P+ IF+ ++ Y + R H+ ++ VV DK T SKG FVKF Sbjct: 21 DEPPNSRIFLV-----ISKYTSESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFAR 75 Query: 375 PTEQARAMTEMNGM---PCSSRPMRIGPAANRKT 467 ++ RAM EM+G P ++P+++ A +R + Sbjct: 76 SSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSS 109
>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 46.2 bits (108), Expect = 6e-05 Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 3/91 (3%) Frame = +3 Query: 204 DDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTE 383 D+ P+ IF+ ++ ++ +L+E F + ++ VV DK T SKG FVKF ++ Sbjct: 21 DEPPNSRIFLV-ISKHTSELVLRERFSP-FGDIQDIWVVRDKHTKESKGVAFVKFARSSQ 78 Query: 384 QARAMTEMNGM---PCSSRPMRIGPAANRKT 467 RAM EM+G P ++P+++ A +R + Sbjct: 79 ACRAMEEMHGQCLGPSDTKPIKVFIAQSRSS 109 Score = 43.9 bits (102), Expect = 3e-04 Identities = 30/114 (26%), Positives = 59/114 (51%), Gaps = 5/114 (4%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVEL----AYRLNWASAGEKRD-DTPDYTIFVG 236 +G FV+FA + A R ++ +GQ + + + S+G RD + + T Sbjct: 66 KGVAFVKFARSSQACRAMEEMHGQCLGPSDTKPIKVFIAQSRSSGSHRDVEDEELTRIFV 125 Query: 237 DLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 + T+ L+E F+V Y ++ ++ +K+T SKG G+V++ P++ A+A+ Sbjct: 126 MIPKSYTEEDLREKFKV-YGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAI 178
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 46.2 bits (108), Expect = 6e-05 Identities = 25/76 (32%), Positives = 39/76 (51%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 +F+G L + + L++ F Y + VV D+ T RS+G+GFV F + + AM Sbjct: 7 LFIGGLNFETNEDCLEQAF-TKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65 Query: 405 MNGMPCSSRPMRIGPA 452 MNG R +R+ A Sbjct: 66 MNGKSVDGRQIRVDQA 81
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 46.2 bits (108), Expect = 6e-05 Identities = 29/91 (31%), Positives = 50/91 (54%) Frame = +3 Query: 213 PDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQAR 392 P +T VG+L+ D+T+ L + F S++ +V D +T RS+G+G+V+F + + Sbjct: 92 PPFTAHVGNLSFDLTENDLGDFFGEGVTSIR---LVIDPLTERSRGFGYVEF-ETADTLS 147 Query: 393 AMTEMNGMPCSSRPMRIGPAANRKTTGVXER 485 A ++G RP+RI A R++ ER Sbjct: 148 AALALSGEDLMGRPVRITVAEPRRSFAREER 178
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 45.8 bits (107), Expect = 8e-05 Identities = 27/80 (33%), Positives = 40/80 (50%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 IFVG ++ D T+ L F Y +VK K++ D+ + SKGYGFV F E R + Sbjct: 35 IFVGGISGDTTEADLTRVFSA-YGTVKSTKIIVDRAGV-SKGYGFVTFETEQEAQRLQAD 92 Query: 405 MNGMPCSSRPMRIGPAANRK 464 + R + I PA ++ Sbjct: 93 GECVVLRDRKLNIAPAIKKQ 112
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 45.8 bits (107), Expect = 8e-05 Identities = 27/70 (38%), Positives = 37/70 (52%) Frame = +3 Query: 201 RDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPT 380 R DT IFVG L TD L++ F + ++ A V+TD+ T +S+GYGFV D Sbjct: 26 RKDTTFTKIFVGGLPYHTTDASLRKYFE-GFGDIEEAVVITDRQTGKSRGYGFVTMADRA 84 Query: 381 EQARAMTEMN 410 RA + N Sbjct: 85 AADRACKDPN 94
>DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 45.8 bits (107), Expect = 8e-05 Identities = 33/114 (28%), Positives = 62/114 (54%), Gaps = 5/114 (4%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMM-PNVELAYRLNWA---SAGEKRD-DTPDYTIFVG 236 +G FV+FA + A R ++ +GQ + PN ++ A S+G RD + + T Sbjct: 66 KGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFV 125 Query: 237 DLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 + T+ L+E F+V Y ++ ++ +K+T SKG G+V++ P++ A+A+ Sbjct: 126 MIPKSYTEEDLREKFKV-YGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAI 178 Score = 43.5 bits (101), Expect = 4e-04 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 3/91 (3%) Frame = +3 Query: 204 DDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTE 383 D+ P+ IF+ ++ + +L+E F + ++ VV DK T SKG FVKF ++ Sbjct: 21 DEPPNSRIFLV-ISKYTPESVLRERFSP-FGDIQDIWVVRDKHTKESKGIAFVKFARSSQ 78 Query: 384 QARAMTEMNGM---PCSSRPMRIGPAANRKT 467 RAM EM+G P ++P+++ A +R + Sbjct: 79 ACRAMEEMHGQCLGPNDTKPIKVFIAQSRSS 109
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 45.1 bits (105), Expect = 1e-04 Identities = 25/81 (30%), Positives = 43/81 (53%) Frame = +3 Query: 219 YTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 Y IF+ +LA + + L + F + +V+ K+V D T + KGYGFV + E A A+ Sbjct: 438 YPIFIYNLAPETEEAALWQLFGP-FGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAI 496 Query: 399 TEMNGMPCSSRPMRIGPAANR 461 +NG +R +++ N+ Sbjct: 497 RALNGYTMGNRVLQVSFKTNK 517 Score = 43.1 bits (100), Expect(2) = 1e-04 Identities = 31/122 (25%), Positives = 49/122 (40%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDL 242 GQ GYGFV + AE+ + NG + N + + A D ++V L Sbjct: 236 GQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKV----SFARPSSDAIKGANLYVSGL 291 Query: 243 AADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPC 422 +T L+ F + + ++KG GF++F E RA+ +NG Sbjct: 292 PKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGTTP 351 Query: 423 SS 428 SS Sbjct: 352 SS 353 Score = 21.6 bits (44), Expect(2) = 1e-04 Identities = 9/12 (75%), Positives = 10/12 (83%) Frame = +2 Query: 20 GXFQSVKLIRDK 55 G +SVKLIRDK Sbjct: 209 GEIESVKLIRDK 220
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 45.1 bits (105), Expect = 1e-04 Identities = 25/81 (30%), Positives = 43/81 (53%) Frame = +3 Query: 219 YTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 Y IF+ +LA + + L + F + +V+ K+V D T + KGYGFV + E A A+ Sbjct: 402 YPIFIYNLAPETEEAALWQLFGP-FGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAI 460 Query: 399 TEMNGMPCSSRPMRIGPAANR 461 +NG +R +++ N+ Sbjct: 461 RALNGYTMGNRVLQVSFKTNK 481 Score = 43.1 bits (100), Expect(2) = 1e-04 Identities = 31/122 (25%), Positives = 49/122 (40%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDL 242 GQ GYGFV + AE+ + NG + N + + A D ++V L Sbjct: 200 GQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKV----SFARPSSDAIKGANLYVSGL 255 Query: 243 AADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPC 422 +T L+ F + + ++KG GF++F E RA+ +NG Sbjct: 256 PKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGTTP 315 Query: 423 SS 428 SS Sbjct: 316 SS 317 Score = 21.6 bits (44), Expect(2) = 1e-04 Identities = 9/12 (75%), Positives = 10/12 (83%) Frame = +2 Query: 20 GXFQSVKLIRDK 55 G +SVKLIRDK Sbjct: 173 GEIESVKLIRDK 184
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 45.1 bits (105), Expect = 1e-04 Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 3/116 (2%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTP---DYTIFVGDLA 245 G+GFVEF+S AAE + +G ++ +L +++ E+ +T D I + +L Sbjct: 652 GFGFVEFSSKEAAEIAQKAMDGHVLDGHKLQLKISNRGQDEETTETKKAIDSKILIKNLP 711 Query: 246 ADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNG 413 + T +Q+ F + S+K + V K S+G+ F ++ E AM+ + G Sbjct: 712 FEATKKDVQKLFGA-FGSLKTVR-VPKKFNSESRGFAFAEYVSAKEAEHAMSALQG 765
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 44.7 bits (104), Expect = 2e-04 Identities = 25/78 (32%), Positives = 40/78 (51%) Frame = +3 Query: 219 YTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 Y +++G+LA VT+ +L++ F V GAKV T +S G+GFV F E A+ Sbjct: 184 YKVYIGNLAKTVTNELLKDFFS-EKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAI 242 Query: 399 TEMNGMPCSSRPMRIGPA 452 +N + +R+ A Sbjct: 243 QALNNSVLEGQKIRVNKA 260
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 44.7 bits (104), Expect = 2e-04 Identities = 26/68 (38%), Positives = 36/68 (52%) Frame = +3 Query: 207 DTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQ 386 DT IFVG L TD L++ F + ++ A V+TD+ T +S+GYGFV D Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFE-GFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 65 Query: 387 ARAMTEMN 410 RA + N Sbjct: 66 ERACKDPN 73 Score = 30.0 bits (66), Expect = 4.7 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFN---GQMMPNVELAY 170 G+ +GYGFV A AAAER + N NV LAY Sbjct: 49 GKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAY 87
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 44.3 bits (103), Expect = 2e-04 Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 4/105 (3%) Frame = +3 Query: 72 QGYGFVEFAS----HAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGD 239 +G+GFV F+ AA T +G+++ R A G +FVG Sbjct: 50 RGFGFVTFSCMNEVDAAMSARPHTIDGRVVEPKRAVAREESAKPGAH---VTVKKLFVGG 106 Query: 240 LAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGD 374 + D ++ L+E F Y ++ +++TDK + + +G+GFV F D Sbjct: 107 IKEDTEEHHLREYFE-EYGKIESTEIITDKQSGKKRGFGFVTFND 150 Score = 32.0 bits (71), Expect = 1.2 Identities = 18/59 (30%), Positives = 31/59 (52%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 +F+G L+ + T+ L+ F + + V+ D + RS+G+GFV F E AM+ Sbjct: 11 LFIGGLSFETTEESLRN-FYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMS 68
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 43.9 bits (102), Expect = 3e-04 Identities = 22/63 (34%), Positives = 38/63 (60%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 +++G L+ ++ L++ F + V A+V+T+K+T RS+GYGFV F A++ Sbjct: 33 LYIGGLSPGTDEHSLKDAFS-SFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91 Query: 405 MNG 413 MNG Sbjct: 92 MNG 94 Score = 31.6 bits (70), Expect = 1.6 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMP--NVELAYRLNWASAGEKRDDT 212 G+ +GYGFV F S +A + NGQ + N+ + +W S D++ Sbjct: 69 GRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWPSLPLSLDES 120
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 43.9 bits (102), Expect = 3e-04 Identities = 27/84 (32%), Positives = 41/84 (48%) Frame = +3 Query: 192 GEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFG 371 G + + P+ + V L+ T+ L+E F Y + G VV D+ T RS+G+ FV F Sbjct: 110 GSRANPDPNTCLGVFGLSLYTTERDLREVFS-RYGPLSGVNVVYDQRTGRSRGFAFVYFE 168 Query: 372 DPTEQARAMTEMNGMPCSSRPMRI 443 + AM NGM R +R+ Sbjct: 169 RIDDSKEAMERANGMELDGRRIRV 192
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 43.9 bits (102), Expect = 3e-04 Identities = 27/84 (32%), Positives = 41/84 (48%) Frame = +3 Query: 192 GEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFG 371 G + + P+ + V L+ T+ L+E F Y + G VV D+ T RS+G+ FV F Sbjct: 108 GSRANPDPNTCLGVFGLSLYTTERDLREVFS-RYGPLSGVNVVYDQRTGRSRGFAFVYFE 166 Query: 372 DPTEQARAMTEMNGMPCSSRPMRI 443 + AM NGM R +R+ Sbjct: 167 RIDDSKEAMERANGMELDGRRIRV 190
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 43.9 bits (102), Expect = 3e-04 Identities = 26/97 (26%), Positives = 47/97 (48%) Frame = +3 Query: 153 NVELAYRLNWASAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKM 332 N L + + +AG +++ +F+ L + D L + F + + +V AKV DK Sbjct: 379 NQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMF-MPFGNVVSAKVFIDKQ 437 Query: 333 TMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI 443 T SK +GFV + +P A+ MNG + +++ Sbjct: 438 TNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 474
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 43.9 bits (102), Expect = 3e-04 Identities = 26/97 (26%), Positives = 47/97 (48%) Frame = +3 Query: 153 NVELAYRLNWASAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKM 332 N L + + +AG +++ +F+ L + D L + F + + +V AKV DK Sbjct: 379 NQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMF-MPFGNVVSAKVFIDKQ 437 Query: 333 TMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI 443 T SK +GFV + +P A+ MNG + +++ Sbjct: 438 TNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 474
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 43.1 bits (100), Expect = 5e-04 Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 7/132 (5%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMP--NVELAYRLNWASAGEKRDDTPDYT-----IF 230 +G+ FVE+ A+ L+ NG +M N+++ N A + D+ + I+ Sbjct: 171 KGFAFVEYEIPEGAQLALEQMNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIY 230 Query: 231 VGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMN 410 V + D+++ ++ F P + K+ KGYGF+++ + A+ MN Sbjct: 231 VASIHPDLSEEDIKSVFEAFGP-ILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMN 289 Query: 411 GMPCSSRPMRIG 446 + +R+G Sbjct: 290 LFDLGGQLLRVG 301 Score = 38.9 bits (89), Expect = 0.010 Identities = 19/78 (24%), Positives = 41/78 (52%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 ++VG ++ ++ + ++ F P +K + D +T + KG+ FV++ P A+ + Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGP-IKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190 Query: 405 MNGMPCSSRPMRIGPAAN 458 MNG R +++G +N Sbjct: 191 MNGALMGGRNIKVGRPSN 208
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 43.1 bits (100), Expect = 5e-04 Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMP----NVELAYRLNWASAGEKRDDTPDYTIFVGDL 242 G+GFVEF + A V+ +G ++ ++L++R A + EK+ + I V +L Sbjct: 687 GFGFVEFRTKEQATAVISAMDGTVIDGHKIQLKLSHRQGNAGSQEKK-KAKNGKIIVKNL 745 Query: 243 AADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPC 422 + T + E F + +K + V K ++G+ FV+F P E AM ++ G+ Sbjct: 746 PFEATRKDVFELFN-SFGQLKSVR-VPKKFDKSARGFAFVEFVLPKEAENAMDQLQGVHL 803 Query: 423 SSRPMRIGPA 452 R + + PA Sbjct: 804 LGRRLVMQPA 813 Score = 31.2 bits (69), Expect = 2.1 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 4/102 (3%) Frame = +3 Query: 207 DTPDYTIFVGDLAADVTDYMLQETFRVH----YPSVKGAKVVTDKMTMRSKGYGFVKFGD 374 D P +IF+ +L T L + F+V VK K + S G+GFV+F Sbjct: 636 DGPTVSIFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQKNKVLSMGFGFVEFRT 695 Query: 375 PTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVXERVPIXN 500 + ++ M+G +++ + + G E+ N Sbjct: 696 KEQATAVISAMDGTVIDGHKIQLKLSHRQGNAGSQEKKKAKN 737
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 42.0 bits (97), Expect = 0.001 Identities = 24/102 (23%), Positives = 51/102 (50%) Frame = +3 Query: 213 PDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQAR 392 P +FVG+L+ DVTD +L++ F+ H + ++ T + + + KG+ F+ F + Sbjct: 237 PSRILFVGNLSFDVTDDLLRKHFQ-HCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTN 295 Query: 393 AMTEMNGMPCSSRPMRIGPAANRKTTGVXERVPIXNTNTQGA 518 + + + + RP+R+ +R V ++V + N + Sbjct: 296 ELKDKSCRKIAGRPLRMEYGEDRSKRQVRKKVENVSRNNSSS 337
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 42.0 bits (97), Expect = 0.001 Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 4/105 (3%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVL----QTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGD 239 +G+GFV F+S A + + + +G+++ R +G+ +FVG Sbjct: 50 RGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAR---EESGKPGAHVTVKKLFVGG 106 Query: 240 LAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGD 374 + D ++ L++ F Y + +++TD+ + + +G+GFV F D Sbjct: 107 IKEDTEEHHLRDYFE-EYGKIDTIEIITDRQSGKKRGFGFVTFDD 150 Score = 32.3 bits (72), Expect = 0.95 Identities = 17/58 (29%), Positives = 30/58 (51%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 +F+G L+ + T+ L+ + + + V+ D + RS+G+GFV F E AM Sbjct: 11 LFIGGLSFETTEESLRNYYE-QWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 67
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/60 (38%), Positives = 34/60 (56%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 IFVG L ++ TD +++E F + + V+ D T RS+G+GFV F TE AM + Sbjct: 25 IFVGGLTSNTTDDLMRE-FYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 42.0 bits (97), Expect = 0.001 Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 4/105 (3%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVL----QTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGD 239 +G+GFV F+S A + + + +G+++ R +G+ +FVG Sbjct: 62 RGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAR---EESGKPGAHVTVKKLFVGG 118 Query: 240 LAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGD 374 + D ++ L++ F Y + +++TD+ + + +G+GFV F D Sbjct: 119 IKEDTEEHHLRDYFE-EYGKIDTIEIITDRQSGKKRGFGFVTFDD 162 Score = 33.9 bits (76), Expect = 0.33 Identities = 19/68 (27%), Positives = 34/68 (50%) Frame = +3 Query: 195 EKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGD 374 +KR+ +F+G L+ + T+ L+ + + + V+ D + RS+G+GFV F Sbjct: 13 KKREKEQFRKLFIGGLSFETTEESLRNYYE-QWGKLTDCVVMRDPASKRSRGFGFVTFSS 71 Query: 375 PTEQARAM 398 E AM Sbjct: 72 MAEVDAAM 79
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 41.6 bits (96), Expect = 0.002 Identities = 27/76 (35%), Positives = 39/76 (51%) Frame = +3 Query: 216 DYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARA 395 D T+FVG+L VT+ +L E F P +K K+ DK + K + FV F A Sbjct: 9 DRTLFVGNLETKVTEELLFELFHQAGPVIK-VKIPKDK-DGKPKQFAFVNFKHEVSVPYA 66 Query: 396 MTEMNGMPCSSRPMRI 443 M +NG+ RP++I Sbjct: 67 MNLLNGIKLFGRPIKI 82
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 41.6 bits (96), Expect = 0.002 Identities = 27/76 (35%), Positives = 39/76 (51%) Frame = +3 Query: 216 DYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARA 395 D T+FVG+L VT+ +L E F P +K K+ DK + K + FV F A Sbjct: 9 DRTLFVGNLETKVTEELLFELFHQAGPVIK-VKIPKDK-DGKPKQFAFVNFKHEVSVPYA 66 Query: 396 MTEMNGMPCSSRPMRI 443 M +NG+ RP++I Sbjct: 67 MNLLNGIKLYGRPIKI 82
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 41.6 bits (96), Expect = 0.002 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 1/95 (1%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 +F+G L + + ML+ F H P + ++ D+ T +S+G+ F+ F +P + A + Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGP-ISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKD 67 Query: 405 MNGMPCSSRPMRIGPAANRK-TTGVXERVPIXNTN 506 MNG + +++ A +G R P + N Sbjct: 68 MNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRN 102
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 41.6 bits (96), Expect = 0.002 Identities = 24/85 (28%), Positives = 47/85 (55%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 +IFVG++ DVT +++ F+ +K ++ D+ T KGYG+++F P + +A+ Sbjct: 65 SIFVGNITPDVTPEQIEDHFK-DCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKAL- 122 Query: 402 EMNGMPCSSRPMRIGPAANRKTTGV 476 ++NG + + A +RK T + Sbjct: 123 QLNGGELKGKKI----AVSRKRTNI 143
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 41.6 bits (96), Expect = 0.002 Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 5/106 (4%) Frame = +3 Query: 183 ASAGEKRDDTPDY-TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGF 359 ++ ++ DD D T+FV + DVTD L + F ++ +K A VV D RS+G+GF Sbjct: 13 SNVSKQNDDGLDMKTLFVRSIPQDVTDEQLADFFS-NFAPIKHAVVVKDT-NKRSRGFGF 70 Query: 360 VKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR----KTTGVXER 485 V F + A+ + + +R+ A R KT+ V E+ Sbjct: 71 VSFAVEDDTKEALAKARKTKFNGHILRVDIAKRRDRSKKTSEVVEK 116 Score = 34.3 bits (77), Expect = 0.25 Identities = 23/66 (34%), Positives = 34/66 (51%) Frame = +3 Query: 177 NWASAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYG 356 N S + ++ D+++FV ++ D T+ L F + SVK A V DK T +KG Sbjct: 276 NKESKRKAQNKREDFSVFVRNVPYDATEESLAPHFS-KFGSVKYALPVIDKSTGLAKGTA 334 Query: 357 FVKFGD 374 FV F D Sbjct: 335 FVAFKD 340
>RAVR1_RAT (Q5XI28) Protein raver-1| Length = 748 Score = 41.6 bits (96), Expect = 0.002 Identities = 31/124 (25%), Positives = 54/124 (43%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAAD 251 +G FV + AE + TF+ + EL+ +L D + V +L Sbjct: 93 KGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQ----------PTDALLCVANLPPS 142 Query: 252 VTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSR 431 +T +E R + S++ +V + T SKGYGF ++ ARA +++ G P R Sbjct: 143 LTQAQFEELVRP-FGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARAKSDLLGKPLGPR 201 Query: 432 PMRI 443 + + Sbjct: 202 TLYV 205
>RAVR1_MOUSE (Q9CW46) Protein raver-1| Length = 748 Score = 41.6 bits (96), Expect = 0.002 Identities = 31/124 (25%), Positives = 54/124 (43%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAAD 251 +G FV + AE + TF+ + EL+ +L D + V +L Sbjct: 93 KGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQ----------PTDALLCVANLPPS 142 Query: 252 VTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSR 431 +T +E R + S++ +V + T SKGYGF ++ ARA +++ G P R Sbjct: 143 LTQAQFEELVRP-FGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARAKSDLLGKPLGPR 201 Query: 432 PMRI 443 + + Sbjct: 202 TLYV 205
>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 265 Score = 41.2 bits (95), Expect = 0.002 Identities = 27/76 (35%), Positives = 39/76 (51%) Frame = +3 Query: 216 DYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARA 395 D T+FVG+L VT+ +L E F P +K K+ DK + K + FV F A Sbjct: 9 DRTLFVGNLETKVTEELLFELFHQAGPVIK-VKIPKDK-DGKLKQFAFVNFKHEVSVPYA 66 Query: 396 MTEMNGMPCSSRPMRI 443 M +NG+ RP++I Sbjct: 67 MNLLNGIKLFGRPIKI 82
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 40.8 bits (94), Expect = 0.003 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 4/118 (3%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQ----TFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIF 230 G+ +G+GFV FA VLQ T +G+ + R +K Y +F Sbjct: 45 GRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTIDPKPCNPRTL-----QKPKKGGGYKVF 99 Query: 231 VGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 +G L ++VT+ L+ TF Y V ++ D+ +S+G+GF+ F + + E Sbjct: 100 LGGLPSNVTETDLR-TFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNE 156 Score = 33.5 bits (75), Expect = 0.43 Identities = 18/52 (34%), Positives = 28/52 (53%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPT 380 +FVG L+ + T L F + + V+ + + RS+G+GFV F DPT Sbjct: 9 LFVGGLSWETTQENLSRYF-CRFGDIIDCVVMKNNESGRSRGFGFVTFADPT 59
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 40.8 bits (94), Expect = 0.003 Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 9/98 (9%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDP----TEQAR 392 +FVG L T L+ F Y V ++ DK T +S+G+GFVKF DP T A Sbjct: 12 LFVGGLDWSTTQETLRSYFS-QYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 393 AMTEMNG-----MPCSSRPMRIGPAANRKTTGVXERVP 491 ++G PC+ R M+ P +R G ++ P Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQ--PERSRPREGWQQKEP 106
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 40.8 bits (94), Expect = 0.003 Identities = 32/131 (24%), Positives = 58/131 (44%) Frame = +3 Query: 69 LQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAA 248 ++ YGFV + +Q NG + E A ++ A+ + +TP IFVG+L Sbjct: 39 VKNYGFVHMETEQQGRDAIQNLNGYTLN--EFAIKVE-AAKSRRAPNTPTTKIFVGNLTD 95 Query: 249 DVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSS 428 ++E F+ Y +V +V + YGFV + A+ E+NG Sbjct: 96 KTRAPEVRELFQ-KYGTVVECDIV--------RNYGFVHLDCVGDVQDAIKELNGRVVDG 146 Query: 429 RPMRIGPAANR 461 +P+++ + +R Sbjct: 147 QPLKVQVSTSR 157
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 40.8 bits (94), Expect = 0.003 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 3/84 (3%) Frame = +3 Query: 222 TIFVG--DLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKF-GDPTEQAR 392 T+FVG D+ D T+ +F Y SVK K++TD+ T SKGYGFV F D Q Sbjct: 41 TVFVGGIDVRMDETEI---RSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKI 96 Query: 393 AMTEMNGMPCSSRPMRIGPAANRK 464 +++N + +++GPA ++ Sbjct: 97 VESQIN---FHGKKLKLGPAIRKQ 117
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 40.8 bits (94), Expect = 0.003 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 3/84 (3%) Frame = +3 Query: 222 TIFVG--DLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVK-FGDPTEQAR 392 T+FVG D+ D T+ +F Y SVK K++TD+ T SKGYGFV F D Q Sbjct: 41 TVFVGGIDVRMDETEI---RSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKI 96 Query: 393 AMTEMNGMPCSSRPMRIGPAANRK 464 +++N + +++GPA ++ Sbjct: 97 VESQIN---FHGKKLKLGPAIRKQ 117
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 40.8 bits (94), Expect = 0.003 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 3/84 (3%) Frame = +3 Query: 222 TIFVG--DLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVK-FGDPTEQAR 392 T+FVG D+ D T+ +F Y SVK K++TD+ T SKGYGFV F D Q Sbjct: 41 TVFVGGIDVRMDETEI---RSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKI 96 Query: 393 AMTEMNGMPCSSRPMRIGPAANRK 464 +++N + +++GPA ++ Sbjct: 97 VESQIN---FHGKKLKLGPAIRKQ 117
>RNP24_SCHPO (Q09100) RNA-binding protein rnp24| Length = 369 Score = 40.8 bits (94), Expect = 0.003 Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 14/125 (11%) Frame = +3 Query: 66 QLQGYGFVEFASHAAAERVLQ----TFNGQ---MMPNVELAYR-------LNWASAGEKR 203 Q +G+ +V+FA+ A + LQ NG+ + N + + R L+ ++ + Sbjct: 163 QNKGFAYVDFATEDALKLALQCSEKALNGRNILIKSNTDFSGRPSKPANTLSKTASIQSS 222 Query: 204 DDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTE 383 P +FVG+L + TD L+E F ++ +++T + T + KG+GFV F D Sbjct: 223 KKEPSSILFVGNLDFETTDADLKEHFG-QVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDT 281 Query: 384 QARAM 398 +AM Sbjct: 282 CMKAM 286
>RAVR1_HUMAN (Q8IY67) Protein raver-1| Length = 606 Score = 40.4 bits (93), Expect = 0.003 Identities = 30/124 (24%), Positives = 54/124 (43%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAAD 251 +G FV + AE + F+ + EL+ +L D + V +L Sbjct: 93 KGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ----------PTDALLCVANLPPS 142 Query: 252 VTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSR 431 +T +E R + S++ +V + T +SKGYGF ++ ARA +++ G P R Sbjct: 143 LTQQQFEELVRP-FGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPR 201 Query: 432 PMRI 443 + + Sbjct: 202 TLYV 205
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 40.4 bits (93), Expect = 0.003 Identities = 20/61 (32%), Positives = 30/61 (49%) Frame = +3 Query: 291 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 470 Y V +K++ D+ T RS+G+GFV F A+ MNG R + + A +R Sbjct: 10 YGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSRGGR 69 Query: 471 G 473 G Sbjct: 70 G 70
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 40.4 bits (93), Expect = 0.003 Identities = 24/86 (27%), Positives = 43/86 (50%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 +FV +L D ++ L+ F + ++ V D + SKG+ +V++ +P +A E Sbjct: 303 LFVRNLPYDASESDLEPVFS-KFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAYKE 361 Query: 405 MNGMPCSSRPMRIGPAANRKTTGVXE 482 ++G R M I PA +KT + E Sbjct: 362 LDGKHFQGRLMHILPATAKKTYKIDE 387 Score = 34.3 bits (77), Expect = 0.25 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 10/118 (8%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLN----WASAGEKRDDTPD------YT 224 G+GFV+F + A A+ L +G + EL R + A+ +R+DT Sbjct: 644 GFGFVDFRTKAQAQAALAAMDGYKLDQHELVVRASNKAMDAAEERRREDTAKKIAARRTK 703 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 I + +L T ++ F Y ++ + V K ++G+GF F E AM Sbjct: 704 IIIKNLPFQATKKDVRSLFGA-YGQLRSVR-VPKKFDRSARGFGFADFVSAREAENAM 759
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 40.0 bits (92), Expect = 0.005 Identities = 25/86 (29%), Positives = 42/86 (48%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 +F+ ++ D T+ ++ F Y ++ V D T +SKG+ +V F DP A A E Sbjct: 303 LFLRNILYDATEEDFKQLFSP-YGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIE 361 Query: 405 MNGMPCSSRPMRIGPAANRKTTGVXE 482 ++ R + I PA +KT + E Sbjct: 362 LDKQIFQGRLLHILPADAKKTHRLDE 387 Score = 35.8 bits (81), Expect = 0.086 Identities = 33/145 (22%), Positives = 68/145 (46%), Gaps = 7/145 (4%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNW-------ASAGEKRDDTPDYTIFV 233 G+GF+EF + A V+ +G ++ ++ +++ S G K+ + I V Sbjct: 659 GFGFIEFRTKEQAGAVIAAMDGAVIDGHKIQLKISHKQSSLPKTSKGSKKKISG--KIIV 716 Query: 234 GDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNG 413 +L + T + E F + +K + V K ++G+ FV+F P+E AM ++ G Sbjct: 717 KNLPFEATRKDVFELFS-SFGQLKSVR-VPKKFDKSARGFAFVEFLLPSEAENAMDQLQG 774 Query: 414 MPCSSRPMRIGPAANRKTTGVXERV 488 + R + + A +++ V E++ Sbjct: 775 VHLLGRRL-VMQYAEQESDDVEEQI 798
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 40.0 bits (92), Expect = 0.005 Identities = 30/147 (20%), Positives = 67/147 (45%), Gaps = 11/147 (7%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDT---------- 212 G+ +G +VEF + + + +G+ + + + +L A K + Sbjct: 278 GRSKGVAYVEFCHEDSVQAAI-ALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAE 336 Query: 213 -PDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQA 389 P + + V ++ ++TD ++ F + ++ + D RSKG+G++++ +P Sbjct: 337 IPFHRLCVSNIHFNLTDEDVKAIFEP-FGDIEFVHLQRDDQN-RSKGFGYIQYRNPISAR 394 Query: 390 RAMTEMNGMPCSSRPMRIGPAANRKTT 470 A+ +MNG + R MR+ ++ TT Sbjct: 395 NALEKMNGFDLAGRNMRVCLGNDKFTT 421 Score = 35.4 bits (80), Expect = 0.11 Identities = 20/49 (40%), Positives = 30/49 (61%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKF 368 T+FV LA +T L + F P V+ A++V DK++ RSKG +V+F Sbjct: 241 TVFVSQLANRLTSRELYDFFEQAGP-VRDAQIVRDKISGRSKGVAYVEF 288
>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)| Length = 289 Score = 40.0 bits (92), Expect = 0.005 Identities = 24/81 (29%), Positives = 44/81 (54%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 T+FVG + + + ++ F Y +VK K++TD+ T SKGYGFV F D + + + Sbjct: 37 TVFVGGIDIRMNEAEIRSYFE-QYGTVKEVKIITDR-TGVSKGYGFVSFLDNVDVQKIVE 94 Query: 402 EMNGMPCSSRPMRIGPAANRK 464 + + +++GPA ++ Sbjct: 95 SQ--ISVHGKRLKLGPAIRKQ 113
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 39.7 bits (91), Expect = 0.006 Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 5/119 (4%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEK-----RDDTPDYTIFVGD 239 G+GFVEF + A V+ +G ++ ++ +L+ A + + + I V + Sbjct: 710 GFGFVEFRTKEQANAVIAAMDGTVIDGHKIQLKLSHRQASQSGNTKTKSNKKSGKIIVKN 769 Query: 240 LAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM 416 L + T + E F + +K + V K ++G+ FV+F P E AM +++G+ Sbjct: 770 LPFEATRKDVFELFN-SFGQLKSVR-VPKKFDKSARGFAFVEFLLPKEAENAMDQLHGV 826
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 39.7 bits (91), Expect = 0.006 Identities = 25/89 (28%), Positives = 38/89 (42%) Frame = +3 Query: 141 QMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVV 320 QM P N +S D +++ L TD L + + Y + K + Sbjct: 30 QMAPPSPSNSTPNSSSGSNGNDQLSKTNLYIRGLQPGTTDQDLVKLCQP-YGKIVSTKAI 88 Query: 321 TDKMTMRSKGYGFVKFGDPTEQARAMTEM 407 DK T + KGYGFV F P+ +A+T + Sbjct: 89 LDKTTNKCKGYGFVDFDSPSAAQKAVTAL 117
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 39.7 bits (91), Expect = 0.006 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 5/86 (5%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQET----FRVHYPSVKGAKVVTDKMTMRSKGYGFVK-FGDPTEQ 386 T+FVG + D + ET F Y SVK K++TD+ T SKGYGFV F D Q Sbjct: 41 TVFVGGI-----DVRMDETEIRGFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQ 94 Query: 387 ARAMTEMNGMPCSSRPMRIGPAANRK 464 +++N + +++GPA ++ Sbjct: 95 KIVESQIN---FHGKKLKLGPAIRKQ 117
>DAZ1_CAEEL (Q20870) DAZ protein 1| Length = 499 Score = 39.7 bits (91), Expect = 0.006 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKF--GDPTEQARAM 398 IFVG T+ L+E F + +VK K+V + +SKGYGF+ F D E+ R + Sbjct: 69 IFVGGFPTSTTETELREHFEKFF-AVKDVKMVKS-LDGQSKGYGFITFETEDQAEEIRKL 126 Query: 399 TEMNGMPCSSRPMRIGPAANR 461 T + SR + +GPA + Sbjct: 127 TPKQ-LEFRSRKLNLGPAIRK 146
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 39.7 bits (91), Expect = 0.006 Identities = 23/84 (27%), Positives = 41/84 (48%) Frame = +3 Query: 192 GEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFG 371 G + + P+ + V L+ T+ L+E F + P + +V D+ + RS+G+ FV F Sbjct: 109 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGP-IADVSIVYDQQSRRSRGFAFVYFE 167 Query: 372 DPTEQARAMTEMNGMPCSSRPMRI 443 + + A NGM R +R+ Sbjct: 168 NVDDAKEAKERANGMELDGRRIRV 191
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 39.7 bits (91), Expect = 0.006 Identities = 23/84 (27%), Positives = 41/84 (48%) Frame = +3 Query: 192 GEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFG 371 G + + P+ + V L+ T+ L+E F + P + +V D+ + RS+G+ FV F Sbjct: 109 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGP-IADVSIVYDQQSRRSRGFAFVYFE 167 Query: 372 DPTEQARAMTEMNGMPCSSRPMRI 443 + + A NGM R +R+ Sbjct: 168 NVDDAKEAKERANGMELDGRRIRV 191
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 39.7 bits (91), Expect = 0.006 Identities = 23/84 (27%), Positives = 41/84 (48%) Frame = +3 Query: 192 GEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFG 371 G + + P+ + V L+ T+ L+E F + P + +V D+ + RS+G+ FV F Sbjct: 109 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGP-IADVSIVYDQQSRRSRGFAFVYFE 167 Query: 372 DPTEQARAMTEMNGMPCSSRPMRI 443 + + A NGM R +R+ Sbjct: 168 NVDDAKEAKERANGMELDGRRIRV 191
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 39.7 bits (91), Expect = 0.006 Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 5/119 (4%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLN-----WASAGEKRDDTPDYTIFVGD 239 G+GFVEF + A + T +G ++ +L +L+ SA + I + + Sbjct: 664 GFGFVEFRTKEQANVAISTLDGHVLDGHKLQLKLSHKQGTGTSASSIKKSGKSSKIIIKN 723 Query: 240 LAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM 416 L + T L E F + +K + V K ++G+ FV+F E AM+++ G+ Sbjct: 724 LPFEATRKDLLELFGA-FGQLKSVR-VPKKFDQSARGFAFVEFNLMKEAETAMSQLEGV 780
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 39.3 bits (90), Expect = 0.008 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 6/130 (4%) Frame = +3 Query: 72 QGYGFVEFASH---AAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDD---TPDYTIFV 233 +G+ F+E+ H A A R L + ++ NV + WA E+ D +FV Sbjct: 289 RGFCFLEYEDHKSAAQARRRLMSGKVKVWGNV---VTVEWADPVEEPDPEVMAKVKVLFV 345 Query: 234 GDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNG 413 +LA VT+ +L+++F + ++ K + D Y FV F D +AM EMNG Sbjct: 346 RNLATTVTEEILEKSFS-EFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEMNG 396 Query: 414 MPCSSRPMRI 443 + I Sbjct: 397 KEIEGEEIEI 406
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 39.3 bits (90), Expect = 0.008 Identities = 25/88 (28%), Positives = 41/88 (46%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 IFVG L ++T+ + F Y + +V DK T +SKG+ F+ + D A+ Sbjct: 38 IFVGGLPYELTEGDIICVFS-QYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDN 96 Query: 405 MNGMPCSSRPMRIGPAANRKTTGVXERV 488 NG+ R +R+ +N + E V Sbjct: 97 FNGIKIKGRTIRVDHVSNYRAPQESEDV 124
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 38.9 bits (89), Expect = 0.010 Identities = 28/105 (26%), Positives = 56/105 (53%), Gaps = 3/105 (2%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQT---FNGQMMPNVELAYRLNWASAGEKRDDTPDYTIFV 233 G+ +G+GF+ F ++ + V++T +G+++ R +++D T IFV Sbjct: 197 GRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPR-------DEQDKTGK--IFV 247 Query: 234 GDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKF 368 G + DV +E F + ++ A+++ DK T +S+G+GFV + Sbjct: 248 GGIGPDVRPKEFEEFFS-QWGTIIDAQLMLDKDTGQSRGFGFVTY 291 Score = 37.7 bits (86), Expect = 0.023 Identities = 20/52 (38%), Positives = 31/52 (59%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPT 380 +F+G L D T+ L+E F Y +V K++ D T RS+G+GF+ F P+ Sbjct: 161 MFIGGLNWDTTEDNLREYFG-KYGTVTDLKIMKDPATGRSRGFGFLSFEKPS 211
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 38.9 bits (89), Expect = 0.010 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 13/89 (14%) Frame = +3 Query: 186 SAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMT---------- 335 S K P +I+V L+ +T+ L+E F + P+ A++ + Sbjct: 194 SGKNKAKPLPPNSIYVSGLSVTLTNEGLKEMFDAYNPT--RARIAVRSLPPYIIRRIKLR 251 Query: 336 ---MRSKGYGFVKFGDPTEQARAMTEMNG 413 R +G+GFV F + +Q+RA+ EMNG Sbjct: 252 GEQRRGRGFGFVSFANAEDQSRAIEEMNG 280
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 38.5 bits (88), Expect = 0.013 Identities = 21/51 (41%), Positives = 28/51 (54%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDP 377 +FVG L T L+ F Y V ++ DK T +S+G+GFVKF DP Sbjct: 12 LFVGGLDWSTTQETLRSYFS-QYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 38.5 bits (88), Expect = 0.013 Identities = 23/64 (35%), Positives = 36/64 (56%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 TI V +L+ D + LQE FR + S+ + DK T +SKG+ F+ F + ARA+ Sbjct: 240 TIRVTNLSEDTRETDLQELFRP-FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA 298 Query: 402 EMNG 413 ++G Sbjct: 299 GVSG 302
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 38.5 bits (88), Expect = 0.013 Identities = 23/64 (35%), Positives = 36/64 (56%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 TI V +L+ D + LQE FR + S+ + DK T +SKG+ F+ F + ARA+ Sbjct: 240 TIRVTNLSEDTRETDLQELFRP-FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA 298 Query: 402 EMNG 413 ++G Sbjct: 299 GVSG 302
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 38.5 bits (88), Expect = 0.013 Identities = 21/51 (41%), Positives = 28/51 (54%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDP 377 +FVG L T L+ F Y V ++ DK T +S+G+GFVKF DP Sbjct: 12 LFVGGLDWSTTQETLRSYFS-QYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 38.5 bits (88), Expect = 0.013 Identities = 24/76 (31%), Positives = 37/76 (48%) Frame = +3 Query: 216 DYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARA 395 D T+FVG+L A V + +L E F P K + + K +GFV F P + A Sbjct: 9 DRTVFVGNLEARVREEILYELFLQAGPLTK--VTICKDREGKPKSFGFVCFKHPESVSYA 66 Query: 396 MTEMNGMPCSSRPMRI 443 + +NG+ RP+ + Sbjct: 67 IALLNGIRLYGRPINV 82
>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) Length = 981 Score = 38.1 bits (87), Expect = 0.017 Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 12/139 (8%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTI----- 227 G +GY +VEF +A + L+ M + R + S + PD+ + Sbjct: 761 GDFRGYRYVEFKEEKSALQALE------MDRKSVEGRPMFVSPCVDKSKNPDFKVFRYST 814 Query: 228 -------FVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQ 386 F+ L T L+E + H +VK ++VT++ + KG +V++ + ++ Sbjct: 815 SLEKHKLFISGLPFSCTKEELEEICKAH-GTVKDLRLVTNR-AGKPKGLAYVEYENESQA 872 Query: 387 ARAMTEMNGMPCSSRPMRI 443 ++A+ +M+GM +++ Sbjct: 873 SQAVMKMDGMTIKENVIKV 891
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 38.1 bits (87), Expect = 0.017 Identities = 19/76 (25%), Positives = 37/76 (48%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 +F+G L + + L+ F Y + ++ D+ T +S+G+ FV F P + A + Sbjct: 10 LFIGGLNTETNEKALEAVFG-KYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68 Query: 405 MNGMPCSSRPMRIGPA 452 MNG + +++ A Sbjct: 69 MNGKSLDGKAIKVEQA 84
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 38.1 bits (87), Expect = 0.017 Identities = 28/109 (25%), Positives = 51/109 (46%) Frame = +3 Query: 162 LAYRLNWASAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMR 341 +A +++W S E +D IF+G L ++T+ + F Y + +V DK T + Sbjct: 22 VADKVSWHS--EYKDSA---WIFLGGLPYELTEGDIICVFS-QYGEIVNINLVRDKKTGK 75 Query: 342 SKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVXERV 488 SKG+ F+ + D A+ NG+ R +R+ +N + E + Sbjct: 76 SKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPKDSEEI 124
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 37.7 bits (86), Expect = 0.023 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = +3 Query: 291 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 461 + +VK + DK T SKG FV F DP A +G R + + PA N+ Sbjct: 337 FGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRAKDGSTFQGRLLHLLPAVNK 393
>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4| Length = 579 Score = 37.4 bits (85), Expect = 0.029 Identities = 24/81 (29%), Positives = 44/81 (54%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 T+FVG + A + + + F Y SVK K++T++ T SKGYGFV F + + + + Sbjct: 206 TVFVGGIDARMDETEIGSCFG-RYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVG 263 Query: 402 EMNGMPCSSRPMRIGPAANRK 464 + + +++GPA ++ Sbjct: 264 SQ--IHFHGKKLKLGPAIRKQ 282 Score = 37.4 bits (85), Expect = 0.029 Identities = 24/81 (29%), Positives = 44/81 (54%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 T+FVG + A + + + F Y SVK K++T++ T SKGYGFV F + + + + Sbjct: 41 TVFVGGIDARMDETEIGSCFG-RYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVG 98 Query: 402 EMNGMPCSSRPMRIGPAANRK 464 + + +++GPA ++ Sbjct: 99 SQ--IHFHGKKLKLGPAIRKQ 117
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 37.4 bits (85), Expect = 0.029 Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 15/123 (12%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRD----------DTPDYT 224 GYGFV F + AA + L+ G + L + A + R+ T Sbjct: 582 GYGFVGFKTKEAATKALKALEGFEIDGKSLEVKFAQRGAEDDRETKKGGDAEGGKTKSTK 641 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAK-----VVTDKMTMRSKGYGFVKFGDPTEQA 389 + V +L + T ++E F Y +K + V T ++G+ F++F TE A Sbjct: 642 VLVKNLPFEATKKDVRELFSA-YGQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTTHTEAA 700 Query: 390 RAM 398 RAM Sbjct: 701 RAM 703
>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2| Length = 558 Score = 37.4 bits (85), Expect = 0.029 Identities = 24/81 (29%), Positives = 44/81 (54%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 T+FVG + A + + + F Y SVK K++T++ T SKGYGFV F + + + + Sbjct: 41 TVFVGGIDARMDETEIGSCFG-RYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVG 98 Query: 402 EMNGMPCSSRPMRIGPAANRK 464 + + +++GPA ++ Sbjct: 99 SQ--IHFHGKKLKLGPAIRKQ 117
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 37.4 bits (85), Expect = 0.029 Identities = 22/86 (25%), Positives = 41/86 (47%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 +FV +L+ + + L+ F + ++ V D SKG+ +V++ DP A Sbjct: 297 LFVRNLSYETKESELEPVFSP-FGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYRN 355 Query: 405 MNGMPCSSRPMRIGPAANRKTTGVXE 482 ++G R + I PA+ +KT + E Sbjct: 356 LDGKIFQGRLLHILPASQKKTYKLDE 381 Score = 32.0 bits (71), Expect = 1.2 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 10/118 (8%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNW----ASAGEKRDDTPD------YT 224 G+GF +F + A A+ L NG + L R + A+ +++DT Sbjct: 639 GFGFADFKTKAQAQAALAVMNGYTLDRHTLVVRASHKGMDAAEERRKEDTAKKIAARRTK 698 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 I + +L T ++ F Y ++ + V K ++G+GF F E AM Sbjct: 699 IIIKNLPFQATKKDVRSLFGA-YGQLRSVR-VPKKFDRSARGFGFADFVSAREAENAM 754
>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1| Length = 744 Score = 37.4 bits (85), Expect = 0.029 Identities = 24/81 (29%), Positives = 44/81 (54%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 T+FVG + A + + + F Y SVK K++T++ T SKGYGFV F + + + + Sbjct: 371 TVFVGGIDARMDETEIGSCFG-RYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVG 428 Query: 402 EMNGMPCSSRPMRIGPAANRK 464 + + +++GPA ++ Sbjct: 429 SQ--IHFHGKKLKLGPAIRKQ 447 Score = 37.4 bits (85), Expect = 0.029 Identities = 24/81 (29%), Positives = 44/81 (54%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 T+FVG + A + + + F Y SVK K++T++ T SKGYGFV F + + + + Sbjct: 206 TVFVGGIDARMDETEIGSCFG-RYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVG 263 Query: 402 EMNGMPCSSRPMRIGPAANRK 464 + + +++GPA ++ Sbjct: 264 SQ--IHFHGKKLKLGPAIRKQ 282 Score = 37.4 bits (85), Expect = 0.029 Identities = 24/81 (29%), Positives = 44/81 (54%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 T+FVG + A + + + F Y SVK K++T++ T SKGYGFV F + + + + Sbjct: 41 TVFVGGIDARMDETEIGSCFG-RYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVG 98 Query: 402 EMNGMPCSSRPMRIGPAANRK 464 + + +++GPA ++ Sbjct: 99 SQ--IHFHGKKLKLGPAIRKQ 117
>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa) (Tip110) Length = 963 Score = 37.4 bits (85), Expect = 0.029 Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 12/139 (8%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTI----- 227 G +GY +VEF +A + L+ M + R + S + PD+ + Sbjct: 743 GDFRGYCYVEFKEEKSALQALE------MDRKSVEGRPMFVSPCVDKSKNPDFKVFRYST 796 Query: 228 -------FVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQ 386 F+ L T L+E + H +VK ++VT++ + KG +V++ + ++ Sbjct: 797 SLEKHKLFISGLPFSCTKEELEEICKAH-GTVKDLRLVTNR-AGKPKGLAYVEYENESQA 854 Query: 387 ARAMTEMNGMPCSSRPMRI 443 ++A+ +M+GM +++ Sbjct: 855 SQAVMKMDGMTIKENIIKV 873
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 37.4 bits (85), Expect = 0.029 Identities = 20/68 (29%), Positives = 32/68 (47%) Frame = +3 Query: 204 DDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTE 383 D +++ L TD L + + Y + K + DK T + KGYGFV F P+ Sbjct: 53 DQLSKTNLYIRGLQPGTTDQDLVKLCQP-YGKIVSTKAILDKTTNKCKGYGFVDFDSPSS 111 Query: 384 QARAMTEM 407 +A+T + Sbjct: 112 AQKAVTAL 119
>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3| Length = 486 Score = 37.4 bits (85), Expect = 0.029 Identities = 24/81 (29%), Positives = 44/81 (54%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 T+FVG + A + + + F Y SVK K++T++ T SKGYGFV F + + + + Sbjct: 41 TVFVGGIDARMDETEIGSCFG-RYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVG 98 Query: 402 EMNGMPCSSRPMRIGPAANRK 464 + + +++GPA ++ Sbjct: 99 SQ--IHFHGKKLKLGPAIRKQ 117
>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export| factor-binding protein 1) (REF1-I) (Ally of AML-1 and LEF-1) (Aly/REF) Length = 254 Score = 37.0 bits (84), Expect = 0.038 Identities = 30/97 (30%), Positives = 47/97 (48%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 + V +L V+D +QE F + ++K A V D+ + RS G V F + +AM + Sbjct: 106 LLVSNLDFGVSDADIQELF-AEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQ 163 Query: 405 MNGMPCSSRPMRIGPAANRKTTGVXERVPIXNTNTQG 515 NG+P RPM I ++ T +R P + N G Sbjct: 164 YNGVPLDGRPMNIQLVTSQIDT---QRRPAQSINRGG 197
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 36.6 bits (83), Expect = 0.050 Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 7/135 (5%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNW----ASAGEKRDDT--PDYT-IFV 233 G+GFVEF A+A + NG ++ +L +L+ A+A ++ D+ P T I + Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKGTKILI 725 Query: 234 GDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNG 413 +L + T +Q Y ++ + V K ++G+ F +F E A AM + Sbjct: 726 KNLPFEATKKDVQSLLGA-YGQLRSVR-VPKKFDRSARGFAFAEFVTAREAANAMRALKN 783 Query: 414 MPCSSRPMRIGPAAN 458 R + + A+N Sbjct: 784 THLLGRHLVLQYASN 798
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 36.6 bits (83), Expect = 0.050 Identities = 19/73 (26%), Positives = 37/73 (50%) Frame = +3 Query: 213 PDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQAR 392 P T+FV L + ++ ++ F + P +K +VTD++T + KGY F+++ + Sbjct: 136 PYKTLFVSRLNYESSESKIKREFESYGP-IKRVHLVTDQLTNKPKGYAFIEYMHTRDMKA 194 Query: 393 AMTEMNGMPCSSR 431 A + +G R Sbjct: 195 AYKQADGQKIDGR 207
>YFK2_YEAST (P43607) Hypothetical 31.9 kDa protein in RPL2A-RPL29 intergenic| region Length = 289 Score = 36.6 bits (83), Expect = 0.050 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 20/94 (21%) Frame = +3 Query: 75 GYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDY----------- 221 G F +FA++ A + +Q NG + N +L +L+ + D TPD Sbjct: 69 GIAFAQFANNTLALKAIQDLNGTVFQNQKLFLKLH---VPYEADSTPDTDVKKPKEKNKV 125 Query: 222 ---------TIFVGDLAADVTDYMLQETFRVHYP 296 T++ DL D+TD ++E F+++ P Sbjct: 126 KKTPETAADTVYCHDLPDDITDSEIRELFQLYSP 159
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 36.6 bits (83), Expect = 0.050 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 4/88 (4%) Frame = +3 Query: 192 GEKRDDTPDY----TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGF 359 G R PD ++ + +L+ T L+ TF Y + + DK + +SKG+GF Sbjct: 6 GGDRRAAPDINGLTSLKIDNLSYQTTPNDLRRTFE-RYGDIGDVHIPRDKYSRQSKGFGF 64 Query: 360 VKFGDPTEQARAMTEMNGMPCSSRPMRI 443 V+F + + A+ +G R +R+ Sbjct: 65 VRFYERRDAEHALDRTDGKLVDGRELRV 92
>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)| (Transcriptional coactivator Aly/REF) (bZIP-enhancing factor BEF) Length = 256 Score = 36.2 bits (82), Expect = 0.066 Identities = 25/73 (34%), Positives = 38/73 (52%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 + V +L V+D +QE F + ++K A V D+ + RS G V F + +AM + Sbjct: 107 LLVSNLDFGVSDADIQELF-AEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQ 164 Query: 405 MNGMPCSSRPMRI 443 NG+P RPM I Sbjct: 165 YNGVPLDGRPMNI 177
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 36.2 bits (82), Expect = 0.066 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Frame = +3 Query: 195 EKRDDTPDYT-IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMR-SKGYGFVKF 368 ++R +P T + +G L +VT + E F Y +K + ++M SKGY +V+F Sbjct: 152 KRRSPSPKPTKVHIGRLTRNVTKDHIMEIFST-YGKIKMIDMPVERMHPHLSKGYAYVEF 210 Query: 369 GDPTEQARAMTEMNG 413 +P E +A+ M+G Sbjct: 211 ENPDEAEKALKHMDG 225
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 36.2 bits (82), Expect = 0.066 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Frame = +3 Query: 195 EKRDDTPDYT-IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMR-SKGYGFVKF 368 ++R +P T + +G L +VT + E F Y +K + ++M SKGY +V+F Sbjct: 152 KRRSPSPKPTKVHIGRLTRNVTKDHIMEIFST-YGKIKMIDMPVERMHPHLSKGYAYVEF 210 Query: 369 GDPTEQARAMTEMNG 413 +P E +A+ M+G Sbjct: 211 ENPDEAEKALKHMDG 225
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 36.2 bits (82), Expect = 0.066 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Frame = +3 Query: 195 EKRDDTPDYT-IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMR-SKGYGFVKF 368 ++R +P T + +G L +VT + E F Y +K + ++M SKGY +V+F Sbjct: 152 KRRSPSPKPTKVHIGRLTRNVTKDHIMEIFST-YGKIKMIDMPVERMHPHLSKGYAYVEF 210 Query: 369 GDPTEQARAMTEMNG 413 +P E +A+ M+G Sbjct: 211 ENPDEAEKALKHMDG 225
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 36.2 bits (82), Expect = 0.066 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Frame = +3 Query: 195 EKRDDTPDYT-IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMR-SKGYGFVKF 368 ++R +P T + +G L +VT + E F Y +K + ++M SKGY +V+F Sbjct: 152 KRRSPSPKPTKVHIGRLTRNVTKDHIMEIFST-YGKIKMIDMPVERMHPHLSKGYAYVEF 210 Query: 369 GDPTEQARAMTEMNG 413 +P E +A+ M+G Sbjct: 211 ENPDEAEKALKHMDG 225
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 36.2 bits (82), Expect = 0.066 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Frame = +3 Query: 195 EKRDDTPDYT-IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMR-SKGYGFVKF 368 ++R +P T + +G L +VT + E F Y +K + ++M SKGY +V+F Sbjct: 152 KRRSPSPKPTKVHIGRLTRNVTKDHIMEIFST-YGKIKMIDMPVERMHPHLSKGYAYVEF 210 Query: 369 GDPTEQARAMTEMNG 413 +P E +A+ M+G Sbjct: 211 ENPDEAEKALKHMDG 225
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 36.2 bits (82), Expect = 0.066 Identities = 20/75 (26%), Positives = 35/75 (46%) Frame = +3 Query: 183 ASAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFV 362 +S+ D +++ L + TD L + + Y + K + DK T + KGYGFV Sbjct: 50 SSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQP-YGKIVSTKAILDKATNKCKGYGFV 108 Query: 363 KFGDPTEQARAMTEM 407 F P +A++ + Sbjct: 109 DFDSPAAAQKAVSAL 123 Score = 30.4 bits (67), Expect = 3.6 Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 1/110 (0%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYT-IFVGDLAA 248 +GYGFV+F S AAA++ + A + N A + D T +++ +L Sbjct: 103 KGYGFVDFDSPAAAQKAVS------------ALKANGVQAQMAKQQEQDPTNLYISNLPL 150 Query: 249 DVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 + + L+ + + V +V+ D + S+G GF + + TE+ A+ Sbjct: 151 SMDEQELENMLK-PFGQVISTRVLRDS-SGASRGVGFARM-ESTEKCEAV 197
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 36.2 bits (82), Expect = 0.066 Identities = 18/76 (23%), Positives = 36/76 (47%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 +F+G L + + L+ F Y + ++ D+ T +S+G+ FV F P + + Sbjct: 10 LFIGGLNTETNEKALEAVFG-KYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68 Query: 405 MNGMPCSSRPMRIGPA 452 MNG + +++ A Sbjct: 69 MNGKSLDGKAIKVEQA 84
>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (mSART-3) (Tumor-rejection antigen SART3) Length = 962 Score = 36.2 bits (82), Expect = 0.066 Identities = 28/139 (20%), Positives = 64/139 (46%), Gaps = 12/139 (8%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTI----- 227 G +GY +VEF +A++ L+ + + R + S + PD+ + Sbjct: 743 GDFRGYCYVEFGEEKSAQQALE------LDRKIVEGRPMFVSPCVDKSKNPDFKVFRYST 796 Query: 228 -------FVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQ 386 F+ L T L++ + H +VK ++VT++ + KG +V++ + ++ Sbjct: 797 TLEKHKLFISGLPFSCTKEELEDICKAH-GTVKDLRLVTNR-AGKPKGLAYVEYENESQA 854 Query: 387 ARAMTEMNGMPCSSRPMRI 443 ++A+ +M+GM +++ Sbjct: 855 SQAVMKMDGMTIRENVIKV 873
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 36.2 bits (82), Expect = 0.066 Identities = 20/50 (40%), Positives = 29/50 (58%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGD 374 +F+G L+ T L+E F + VK V+ D +T RS+G+GFV F D Sbjct: 22 MFIGGLSWQTTQEGLREYFG-QFGEVKECLVMRDPLTKRSRGFGFVTFMD 70
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 36.2 bits (82), Expect = 0.066 Identities = 20/50 (40%), Positives = 29/50 (58%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGD 374 +F+G L+ T L+E F + VK V+ D +T RS+G+GFV F D Sbjct: 22 MFIGGLSWQTTQEGLREYFG-QFGEVKECLVMRDPLTKRSRGFGFVTFMD 70
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 36.2 bits (82), Expect = 0.066 Identities = 20/50 (40%), Positives = 29/50 (58%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGD 374 +F+G L+ T L+E F + VK V+ D +T RS+G+GFV F D Sbjct: 22 MFIGGLSWQTTQEGLREYFG-QFGEVKECLVMRDPLTKRSRGFGFVTFMD 70
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 36.2 bits (82), Expect = 0.066 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%) Frame = +3 Query: 177 NWASAGEKRDDTPD----YTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRS 344 +W S+ ++ D + +F+G L+ + TD L+E F + + V+ D T RS Sbjct: 9 HWPSSDDQGHDPKEPEQLRKLFIGGLSFETTDDSLREHFE-QWGKLTDCVVMRDPQTKRS 67 Query: 345 KGYGFVKFGDPTEQARAMT 401 +G+GFV + E +M+ Sbjct: 68 RGFGFVTYSCVEEVDASMS 86
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 36.2 bits (82), Expect = 0.066 Identities = 20/59 (33%), Positives = 33/59 (55%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 +F+G L+ + TD L+E F + ++ V+ D + RS+G+GFV + E AMT Sbjct: 16 LFIGGLSFETTDESLREHFE-QWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMT 73
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 35.8 bits (81), Expect = 0.086 Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 4/77 (5%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFR----VHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQAR 392 IFV +L D T ML++ F V Y +K +SKG G VKF P R Sbjct: 654 IFVRNLPFDFTWKMLKDKFNECGHVLYADIK-------MENGKSKGCGVVKFESPEVAER 706 Query: 393 AMTEMNGMPCSSRPMRI 443 A MNGM S R + + Sbjct: 707 ACRMMNGMKLSGREIDV 723 Score = 32.3 bits (72), Expect = 0.95 Identities = 24/74 (32%), Positives = 37/74 (50%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 T+FV +L V L+E F + V+ A ++ DK +S+G G V F E +A++ Sbjct: 204 TVFVANLDYKVGWKKLKEVFSMAGVVVR-ADILEDK-DGKSRGIGTVTFEQSIEAVQAIS 261 Query: 402 EMNGMPCSSRPMRI 443 NG RPM + Sbjct: 262 MFNGQLLFDRPMHV 275
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 35.8 bits (81), Expect = 0.086 Identities = 25/89 (28%), Positives = 43/89 (48%) Frame = +3 Query: 177 NWASAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYG 356 N+ GEK T +FVG+L D+T+ +++ F + K +V K KG+G Sbjct: 66 NFRKPGEKTF-TQRSRLFVGNLPPDITEEEMRKLFEKYG---KAGEVFIHK----DKGFG 117 Query: 357 FVKFGDPTEQARAMTEMNGMPCSSRPMRI 443 F++ T A E++ MP + +R+ Sbjct: 118 FIRLETRTLAEIAKVELDNMPLRGKQLRV 146
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 35.8 bits (81), Expect = 0.086 Identities = 25/89 (28%), Positives = 43/89 (48%) Frame = +3 Query: 177 NWASAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYG 356 N+ GEK T +FVG+L D+T+ +++ F + K +V K KG+G Sbjct: 61 NFRKPGEKTF-TQRSRLFVGNLPPDITEEEMRKLFEKYG---KAGEVFIHK----DKGFG 112 Query: 357 FVKFGDPTEQARAMTEMNGMPCSSRPMRI 443 F++ T A E++ MP + +R+ Sbjct: 113 FIRLETRTLAEIAKVELDNMPLRGKQLRV 141
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 35.8 bits (81), Expect = 0.086 Identities = 25/89 (28%), Positives = 43/89 (48%) Frame = +3 Query: 177 NWASAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYG 356 N+ GEK T +FVG+L D+T+ +++ F + K +V K KG+G Sbjct: 61 NFRKPGEKTF-TQRSRLFVGNLPPDITEEEMRKLFEKYG---KAGEVFIHK----DKGFG 112 Query: 357 FVKFGDPTEQARAMTEMNGMPCSSRPMRI 443 F++ T A E++ MP + +R+ Sbjct: 113 FIRLETRTLAEIAKVELDNMPLRGKQLRV 141
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 35.8 bits (81), Expect = 0.086 Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 4/77 (5%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFR----VHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQAR 392 IFV +L D T ML++ F V Y +K +SKG G VKF P R Sbjct: 614 IFVRNLPFDFTWKMLKDKFNECGHVLYADIK-------MENGKSKGCGVVKFESPEVAER 666 Query: 393 AMTEMNGMPCSSRPMRI 443 A MNGM S R + + Sbjct: 667 ACRMMNGMKLSGREIDV 683 Score = 33.5 bits (75), Expect = 0.43 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 4/131 (3%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLN----WASAGEKRDDTPDYTIF 230 G+ +G VEF + ++ + N + L + + A ++ T+F Sbjct: 107 GKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVF 166 Query: 231 VGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMN 410 V +L V L+E F + V+ A ++ DK +S+G G V F E +A++ N Sbjct: 167 VANLDYKVGWKKLKEVFSMAGVVVR-ADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFN 224 Query: 411 GMPCSSRPMRI 443 G RPM + Sbjct: 225 GQLLFDRPMHV 235
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 35.8 bits (81), Expect = 0.086 Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 4/77 (5%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFR----VHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQAR 392 IFV +L D T ML++ F V Y +K +SKG G VKF P R Sbjct: 653 IFVRNLPFDFTWKMLKDKFNECGHVLYADIK-------MENGKSKGCGVVKFESPEVAER 705 Query: 393 AMTEMNGMPCSSRPMRI 443 A MNGM S R + + Sbjct: 706 ACRMMNGMKLSGREIDV 722 Score = 33.1 bits (74), Expect = 0.56 Identities = 24/74 (32%), Positives = 37/74 (50%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 T+FV +L V L+E F + V+ A ++ DK +S+G G V F E +A++ Sbjct: 203 TVFVANLDYKVGWKKLKEVFSMAGVVVR-ADILEDK-DGKSRGIGIVTFEQSIEAVQAIS 260 Query: 402 EMNGMPCSSRPMRI 443 NG RPM + Sbjct: 261 MFNGQLLFDRPMHV 274
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 35.8 bits (81), Expect = 0.086 Identities = 20/58 (34%), Positives = 32/58 (55%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 +F+G L+ + TD L+E F + ++ V+ D T RS+G+GFV + E AM Sbjct: 37 LFIGGLSFETTDDSLREHFE-KWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 93
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 35.8 bits (81), Expect = 0.086 Identities = 20/58 (34%), Positives = 32/58 (55%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 +F+G L+ + TD L+E F + ++ V+ D T RS+G+GFV + E AM Sbjct: 37 LFIGGLSFETTDDSLREHFE-KWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 93
>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)| Length = 535 Score = 35.8 bits (81), Expect = 0.086 Identities = 22/89 (24%), Positives = 41/89 (46%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 +++G+L +DVT+ L+E F + +++ K + F+K RA + Sbjct: 115 LYIGNLTSDVTEEELKELFSPYGE-------ISEAFINAEKNFAFLKIDYRANAERAKKD 167 Query: 405 MNGMPCSSRPMRIGPAANRKTTGVXERVP 491 ++G ++P+RI A N T V P Sbjct: 168 LDGRMRKNKPIRIRFAPNATTIRVKNLTP 196
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 35.8 bits (81), Expect = 0.086 Identities = 25/89 (28%), Positives = 43/89 (48%) Frame = +3 Query: 177 NWASAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYG 356 N+ GEK T +FVG+L D+T+ +++ F + K +V K KG+G Sbjct: 63 NFRKPGEKTF-TQRSRLFVGNLPPDITEEEMRKLFEKYG---KAGEVFIHK----DKGFG 114 Query: 357 FVKFGDPTEQARAMTEMNGMPCSSRPMRI 443 F++ T A E++ MP + +R+ Sbjct: 115 FIRLETRTLAEIAKVELDNMPLRGKQLRV 143
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 35.8 bits (81), Expect = 0.086 Identities = 20/58 (34%), Positives = 32/58 (55%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 +F+G L+ + TD L+E F + ++ V+ D T RS+G+GFV + E AM Sbjct: 37 LFIGGLSFETTDDSLREHFE-KWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM 93
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 35.4 bits (80), Expect = 0.11 Identities = 20/75 (26%), Positives = 34/75 (45%) Frame = +3 Query: 183 ASAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFV 362 +S+ D +++ L TD L + + Y + K + DK T + KGYGFV Sbjct: 50 SSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQP-YGKIVSTKAILDKTTNKCKGYGFV 108 Query: 363 KFGDPTEQARAMTEM 407 F P +A++ + Sbjct: 109 DFDSPAAAQKAVSAL 123
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 35.4 bits (80), Expect = 0.11 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 8/122 (6%) Frame = +3 Query: 72 QGYGFVEFASH---AAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDY-----TI 227 +G+ F+E+ H A A R L + ++ NV + WA E D P+ + Sbjct: 286 RGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGT---VEWADPIE--DPDPEVMAKVKVL 340 Query: 228 FVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEM 407 FV +LA VT+ +L+++F + ++ K + D Y F+ F + +AM EM Sbjct: 341 FVRNLANTVTEEILEKSFS-QFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 391 Query: 408 NG 413 NG Sbjct: 392 NG 393
>RU2B_MOUSE (Q9CQI7) U2 small nuclear ribonucleoprotein B"| Length = 225 Score = 35.4 bits (80), Expect = 0.11 Identities = 18/80 (22%), Positives = 36/80 (45%) Frame = +3 Query: 204 DDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTE 383 D P++TI++ ++ + L+ + + + TM+ +G FV F + Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61 Query: 384 QARAMTEMNGMPCSSRPMRI 443 A+ ++ G P +PMRI Sbjct: 62 STNALRQLQGFPFYGKPMRI 81
>RU2B_HUMAN (P08579) U2 small nuclear ribonucleoprotein B"| Length = 225 Score = 35.4 bits (80), Expect = 0.11 Identities = 18/80 (22%), Positives = 36/80 (45%) Frame = +3 Query: 204 DDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTE 383 D P++TI++ ++ + L+ + + + TM+ +G FV F + Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61 Query: 384 QARAMTEMNGMPCSSRPMRI 443 A+ ++ G P +PMRI Sbjct: 62 STNALRQLQGFPFYGKPMRI 81
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 35.4 bits (80), Expect = 0.11 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 8/122 (6%) Frame = +3 Query: 72 QGYGFVEFASH---AAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDY-----TI 227 +G+ F+E+ H A A R L + ++ NV + WA E D P+ + Sbjct: 196 RGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGT---VEWADPIE--DPDPEVMAKVKVL 250 Query: 228 FVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEM 407 FV +LA VT+ +L+++F + ++ K + D Y F+ F + +AM EM Sbjct: 251 FVRNLANTVTEEILEKSFS-QFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 301 Query: 408 NG 413 NG Sbjct: 302 NG 303
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 35.0 bits (79), Expect = 0.15 Identities = 19/59 (32%), Positives = 32/59 (54%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 +F+G L+ + TD L+E F + + V+ D T RS+G+GFV + E +M+ Sbjct: 29 LFIGGLSFETTDDSLREHFE-QWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMS 86
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 35.0 bits (79), Expect = 0.15 Identities = 18/76 (23%), Positives = 36/76 (47%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 +F+G L + + L+ F Y + ++ D+ T +S+G+ FV P + A + Sbjct: 10 LFIGGLNTETNEKALEAVFG-KYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68 Query: 405 MNGMPCSSRPMRIGPA 452 MNG + +++ A Sbjct: 69 MNGKSLDGKAIKVEQA 84
>IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B (eIF-4B)| Length = 611 Score = 35.0 bits (79), Expect = 0.15 Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 1/109 (0%) Frame = +3 Query: 210 TPDYTIFVGDLAADVTDYMLQETFR-VHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQ 386 +P YT F+G+L DVT+ ++E FR ++ +V+ + ++ R KG+G+ +F D Sbjct: 93 SPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSN--PERLKGFGYAEFEDLDSL 150 Query: 387 ARAMTEMNGMPCSSRPMRIGPAANRKTTGVXERVPIXNTNTQGAXXDND 533 A++ +N +R +R+ A + +R + N D D Sbjct: 151 LSALS-LNEESLGNRRIRVDVADQAQDKDRDDRSFGRDRNRDSDKTDTD 198
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 35.0 bits (79), Expect = 0.15 Identities = 17/51 (33%), Positives = 29/51 (56%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDP 377 +F+G L+ + L++ F + ++ V+ D T RS+G+GFV F DP Sbjct: 23 MFIGGLSWQTSPDSLRDYFS-KFGEIRECMVMRDPTTKRSRGFGFVTFADP 72
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 35.0 bits (79), Expect = 0.15 Identities = 17/51 (33%), Positives = 29/51 (56%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDP 377 +F+G L+ + L++ F + ++ V+ D T RS+G+GFV F DP Sbjct: 23 MFIGGLSWQTSPDSLRDYFS-KFGEIRECMVMRDPTTKRSRGFGFVTFADP 72
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 35.0 bits (79), Expect = 0.15 Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 8/122 (6%) Frame = +3 Query: 72 QGYGFVEFASH---AAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDY-----TI 227 +G+ F+E+ H A A R L + ++ NV + WA E D P+ + Sbjct: 286 RGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGT---VEWADPIE--DPDPEVMAKVKVL 340 Query: 228 FVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEM 407 FV +LA VT+ +L++ F + ++ K + D Y F+ F + +AM EM Sbjct: 341 FVRNLANTVTEEILEKAFS-QFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 391 Query: 408 NG 413 NG Sbjct: 392 NG 393
>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)| Length = 229 Score = 35.0 bits (79), Expect = 0.15 Identities = 25/81 (30%), Positives = 44/81 (54%) Frame = +3 Query: 210 TPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQA 389 TP+ T+FVG + V + ++E F Y SVK K++T + + KGYGFV F + + Sbjct: 45 TPN-TLFVGGIDMKVDENEIREFF-AKYGSVKEVKIITYRGGI-CKGYGFVYFSEDVDIQ 101 Query: 390 RAMTEMNGMPCSSRPMRIGPA 452 + + + + +++GPA Sbjct: 102 TIVDQ--PISFKGKKLKLGPA 120
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 34.7 bits (78), Expect = 0.19 Identities = 19/58 (32%), Positives = 31/58 (53%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 +F+G L+ + TD L+ F + ++ V+ D T RS+G+GFV + E AM Sbjct: 15 LFIGGLSFETTDESLRSHFE-QWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 71
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 34.7 bits (78), Expect = 0.19 Identities = 19/58 (32%), Positives = 31/58 (53%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 +F+G L+ + TD L+ F + ++ V+ D T RS+G+GFV + E AM Sbjct: 15 LFIGGLSFETTDESLRSHFE-QWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 71
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 34.7 bits (78), Expect = 0.19 Identities = 21/79 (26%), Positives = 38/79 (48%) Frame = +3 Query: 219 YTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 + +F+G L + D ++E P +K +V D T SKGY F ++ D +A+ Sbjct: 259 HKLFIGGLPNYLNDDQVKELLTSFGP-LKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 317 Query: 399 TEMNGMPCSSRPMRIGPAA 455 +NGM + + + A+ Sbjct: 318 AGLNGMQLGDKKLLVQRAS 336
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 34.7 bits (78), Expect = 0.19 Identities = 21/79 (26%), Positives = 38/79 (48%) Frame = +3 Query: 219 YTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 + +F+G L + D ++E P +K +V D T SKGY F ++ D +A+ Sbjct: 259 HKLFIGGLPNYLNDDQVKELLTSFGP-LKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 317 Query: 399 TEMNGMPCSSRPMRIGPAA 455 +NGM + + + A+ Sbjct: 318 AGLNGMQLGDKKLLVQRAS 336
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 34.7 bits (78), Expect = 0.19 Identities = 24/95 (25%), Positives = 41/95 (43%) Frame = +3 Query: 180 WASAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGF 359 W+ K T IFVG +A ++ L F + P + K++ DK GYGF Sbjct: 182 WSIGVNKHALTYPGNIFVGGIAKSLSIGELSFLFSKYGP-ILSMKLIYDKTKGEPNGYGF 240 Query: 360 VKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRK 464 + + ++ + + E+NG + + I RK Sbjct: 241 ISYPLGSQASLCIKELNGRTVNGSTLFINYHVERK 275 Score = 31.2 bits (69), Expect = 2.1 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = +3 Query: 69 LQGYGFVEFASHAAAERVLQTFNGQM 146 L+GYGF++ +H A ++TFNG M Sbjct: 380 LKGYGFIKLINHEQALAAIETFNGFM 405
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 34.7 bits (78), Expect = 0.19 Identities = 19/58 (32%), Positives = 31/58 (53%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 +F+G L+ + TD L+ F + ++ V+ D T RS+G+GFV + E AM Sbjct: 15 LFIGGLSFETTDESLRSHFE-QWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 71
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 34.7 bits (78), Expect = 0.19 Identities = 19/58 (32%), Positives = 31/58 (53%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 398 +F+G L+ + TD L+ F + ++ V+ D T RS+G+GFV + E AM Sbjct: 15 LFIGGLSFETTDESLRSHFE-QWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 71
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 34.7 bits (78), Expect = 0.19 Identities = 22/62 (35%), Positives = 32/62 (51%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 T+FVG L L+E F P VK VVT+K + +G+G+V F + RA+ Sbjct: 4 TLFVGRLPPSARSEQLEELFSQVGP-VKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALK 62 Query: 402 EM 407 E+ Sbjct: 63 EI 64 Score = 30.4 bits (67), Expect = 3.6 Identities = 16/50 (32%), Positives = 30/50 (60%) Frame = +3 Query: 63 GQLQGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDT 212 G+++G+GFV+F + A + L+ N + + +A ++WA A +K DT Sbjct: 150 GKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVA--VDWAVAKDKYKDT 197
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 34.7 bits (78), Expect = 0.19 Identities = 26/74 (35%), Positives = 37/74 (50%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 TIFV +L V L+E F + +VK A + DK +S+G G V F E +A++ Sbjct: 225 TIFVANLDFKVGWKKLKEVFSIA-GTVKRADIKEDK-DGKSRGMGTVTFEQAIEAVQAIS 282 Query: 402 EMNGMPCSSRPMRI 443 NG RPM + Sbjct: 283 MFNGQFLFDRPMHV 296 Score = 29.6 bits (65), Expect = 6.1 Identities = 21/87 (24%), Positives = 40/87 (45%) Frame = +3 Query: 183 ASAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFV 362 + GEK+ + +F+ ++ D+ +++ R V ++ D +S+G G V Sbjct: 80 SGTGEKKGPNRN-RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEG-KSRGCGVV 137 Query: 363 KFGDPTEQARAMTEMNGMPCSSRPMRI 443 +F D +A+ MN S RP+ I Sbjct: 138 EFKDEEFVKKALETMNKYDLSGRPLNI 164
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 34.7 bits (78), Expect = 0.19 Identities = 26/74 (35%), Positives = 37/74 (50%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 TIFV +L V L+E F + +VK A + DK +S+G G V F E +A++ Sbjct: 234 TIFVANLDFKVGWKKLKEVFSIA-GTVKRADIKEDK-DGKSRGMGTVTFEQAIEAVQAIS 291 Query: 402 EMNGMPCSSRPMRI 443 NG RPM + Sbjct: 292 MFNGQFLFDRPMHV 305 Score = 31.2 bits (69), Expect = 2.1 Identities = 24/73 (32%), Positives = 36/73 (49%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 IFV +L D+T L+E F V A++ + +SKG G V+F P +A Sbjct: 525 IFVRNLPFDLTWQKLKEKFS-QCGHVMFAEIKMENG--KSKGCGTVRFDSPESAEKACRI 581 Query: 405 MNGMPCSSRPMRI 443 MNG+ S R + + Sbjct: 582 MNGIKISGREIDV 594 Score = 29.6 bits (65), Expect = 6.1 Identities = 21/87 (24%), Positives = 40/87 (45%) Frame = +3 Query: 183 ASAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFV 362 + GEK+ + +F+ ++ D+ +++ R V ++ D +S+G G V Sbjct: 89 SGTGEKKGPNRN-RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEG-KSRGCGVV 146 Query: 363 KFGDPTEQARAMTEMNGMPCSSRPMRI 443 +F D +A+ MN S RP+ I Sbjct: 147 EFKDEEFVKKALETMNKYDLSGRPLNI 173
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 34.3 bits (77), Expect = 0.25 Identities = 22/62 (35%), Positives = 32/62 (51%) Frame = +3 Query: 222 TIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMT 401 T+FVG L L+E F P VK VVT+K + +G+G+V F + RA+ Sbjct: 4 TLFVGRLPPSARSDQLEELFSQVGP-VKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALK 62 Query: 402 EM 407 E+ Sbjct: 63 EI 64
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 34.3 bits (77), Expect = 0.25 Identities = 18/76 (23%), Positives = 38/76 (50%) Frame = +3 Query: 225 IFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 404 +FV +A+ + + LQ+ F + +V +++ + +T S+G+GF+ F E A+ Sbjct: 103 LFVSGIASRMQEDELQQIFS-KFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDN 161 Query: 405 MNGMPCSSRPMRIGPA 452 +N R + + A Sbjct: 162 LNSQEFYGRVLNVQKA 177
>FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)| Length = 518 Score = 34.3 bits (77), Expect = 0.25 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 7/95 (7%) Frame = +3 Query: 198 KRDDTPDYTIFVGDLAADVTDYMLQETFR----VHYPSVKGAKVV---TDKMTMRSKGYG 356 ++D++ + TIFV L +VT + + F+ + G ++ TD+ T + KG Sbjct: 271 EQDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEA 330 Query: 357 FVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 461 V F DP A+ +G S P+++ A R Sbjct: 331 TVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRR 365
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 34.3 bits (77), Expect = 0.25 Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 4/128 (3%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTI---FVGDL 242 +G+ FVE+ SH AA + + ++WA + D+ ++ +V +L Sbjct: 179 RGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKILYVRNL 238 Query: 243 AADVTDYMLQETFRVHYP-SVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMP 419 ++ M+++ F P +V+ K + D Y FV F + + AM +NG Sbjct: 239 MLSTSEEMIEKEFNSIKPGAVERVKKIRD--------YAFVHFSNREDAVEAMKALNGKV 290 Query: 420 CSSRPMRI 443 P+ + Sbjct: 291 LDGSPIEV 298
>SNRPA_HUMAN (P09012) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)| (U1A protein) (U1-A) Length = 281 Score = 34.3 bits (77), Expect = 0.25 Identities = 17/77 (22%), Positives = 36/77 (46%) Frame = +3 Query: 213 PDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQAR 392 P++TI++ +L + L+++ + + +++ +G FV F + + Sbjct: 7 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 66 Query: 393 AMTEMNGMPCSSRPMRI 443 A+ M G P +PMRI Sbjct: 67 ALRSMQGFPFYDKPMRI 83
>FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)| Length = 512 Score = 34.3 bits (77), Expect = 0.25 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 7/95 (7%) Frame = +3 Query: 198 KRDDTPDYTIFVGDLAADVTDYMLQETFR----VHYPSVKGAKVV---TDKMTMRSKGYG 356 ++D++ + TIFV L +VT + + F+ + G ++ TD+ T + KG Sbjct: 264 EQDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEA 323 Query: 357 FVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 461 V F DP A+ +G S P+++ A R Sbjct: 324 TVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRR 358
>FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS)| (Translocated in liposarcoma protein) (POMp75) (75 kDa DNA-pairing protein) Length = 526 Score = 34.3 bits (77), Expect = 0.25 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 7/95 (7%) Frame = +3 Query: 198 KRDDTPDYTIFVGDLAADVTDYMLQETFR----VHYPSVKGAKVV---TDKMTMRSKGYG 356 ++D++ + TIFV L +VT + + F+ + G ++ TD+ T + KG Sbjct: 278 EQDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEA 337 Query: 357 FVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 461 V F DP A+ +G S P+++ A R Sbjct: 338 TVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRR 372
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 34.3 bits (77), Expect = 0.25 Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 4/128 (3%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTI---FVGDL 242 +G+ FVE+ SH AA + + ++WA + D+ ++ +V +L Sbjct: 179 RGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKILYVRNL 238 Query: 243 AADVTDYMLQETFRVHYP-SVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMP 419 ++ M+++ F P +V+ K + D Y FV F + + AM +NG Sbjct: 239 MLSTSEEMIEKEFNSIKPGAVERVKKIRD--------YAFVHFSNREDAVEAMKALNGKV 290 Query: 420 CSSRPMRI 443 P+ + Sbjct: 291 LDGSPIEV 298
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 34.3 bits (77), Expect = 0.25 Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 4/128 (3%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTI---FVGDL 242 +G+ FVE+ SH AA + + ++WA + D+ ++ +V +L Sbjct: 179 RGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNL 238 Query: 243 AADVTDYMLQETFRVHYP-SVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMP 419 ++ M+++ F P +V+ K + D Y FV F + + AM +NG Sbjct: 239 MLSTSEEMIEKEFNNIKPGAVERVKKIRD--------YAFVHFSNREDAVEAMKALNGKV 290 Query: 420 CSSRPMRI 443 P+ + Sbjct: 291 LDGSPIEV 298
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 33.9 bits (76), Expect = 0.33 Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 4/128 (3%) Frame = +3 Query: 72 QGYGFVEFASHAAAERVLQTFNGQMMPNVELAYRLNWASAGEKRDDTPDYTI---FVGDL 242 +G+ FVE+ SH AA + + ++WA + D+ ++ +V +L Sbjct: 179 RGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKILYVRNL 238 Query: 243 AADVTDYMLQETFRVHYP-SVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMP 419 ++ M+++ F P +V+ K + D Y FV F + + AM +NG Sbjct: 239 MLSTSEEMIEKEFNNIKPGAVERVKKIRD--------YAFVHFSNREDAVEAMKALNGKV 290 Query: 420 CSSRPMRI 443 P+ + Sbjct: 291 LDGSPIEV 298
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 33.9 bits (76), Expect = 0.33 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = +3 Query: 291 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI 443 Y V + D+ T S+G+ FV+F D + AM M+G R +R+ Sbjct: 37 YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 87
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 33.9 bits (76), Expect = 0.33 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = +3 Query: 291 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI 443 Y V + D+ T S+G+ FV+F D + AM M+G R +R+ Sbjct: 36 YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 86
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 33.9 bits (76), Expect = 0.33 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = +3 Query: 291 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI 443 Y V + D+ T S+G+ FV+F D + AM M+G R +R+ Sbjct: 36 YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 86
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 33.9 bits (76), Expect = 0.33 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = +3 Query: 291 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI 443 Y V + D+ T S+G+ FV+F D + AM M+G R +R+ Sbjct: 36 YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 86 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,762,765 Number of Sequences: 219361 Number of extensions: 1638776 Number of successful extensions: 4959 Number of sequences better than 10.0: 306 Number of HSP's better than 10.0 without gapping: 4205 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4780 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
