ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6k05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483796.1| Oryza sativa (japonica cultivar-group), mRNA 94 2e-16
2ref|XM_483795.1| Oryza sativa (japonica cultivar-group), mRNA 94 2e-16
3ref|XM_507343.1| PREDICTED Oryza sativa (japonica cultivar-group... 94 2e-16
4dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 94 2e-16
5dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic D... 94 2e-16
6dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic D... 94 2e-16
7dbj|AK120773.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 2e-16
8dbj|AK099629.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 2e-16
9dbj|AK069733.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 2e-16
10emb|AL031296.1|HS888M10 Human DNA sequence from clone RP5-888M10... 38 8.7 
>ref|XM_483796.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1998

 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 79/93 (84%)
 Strand = Plus / Plus

                                                                        
Query: 12   tacatatagtccaactcaaaaggttgtagaacctaattttgnagntggngccccgncnnc 71
            ||||||||||||||||||||||||| ||||||||||||||| || ||| |||||  |  |
Sbjct: 1553 tacatatagtccaactcaaaaggttttagaacctaattttgtagttggtgccccatcatc 1612

                                             
Query: 72   cgctaggntacctgaagctggnagncagntaaa 104
             |||||| |||||||||| || || ||| ||||
Sbjct: 1613 tgctaggttacctgaagcgggtagtcagttaaa 1645
to top
>ref|XM_483795.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2439

 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 79/93 (84%)
 Strand = Plus / Plus

                                                                        
Query: 12   tacatatagtccaactcaaaaggttgtagaacctaattttgnagntggngccccgncnnc 71
            ||||||||||||||||||||||||| ||||||||||||||| || ||| |||||  |  |
Sbjct: 1553 tacatatagtccaactcaaaaggttttagaacctaattttgtagttggtgccccatcatc 1612

                                             
Query: 72   cgctaggntacctgaagctggnagncagntaaa 104
             |||||| |||||||||| || || ||| ||||
Sbjct: 1613 tgctaggttacctgaagcgggtagtcagttaaa 1645
to top
>ref|XM_507343.1| PREDICTED Oryza sativa (japonica cultivar-group), P0604E01.48-1 mRNA
          Length = 2626

 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 79/93 (84%)
 Strand = Plus / Plus

                                                                        
Query: 12   tacatatagtccaactcaaaaggttgtagaacctaattttgnagntggngccccgncnnc 71
            ||||||||||||||||||||||||| ||||||||||||||| || ||| |||||  |  |
Sbjct: 1553 tacatatagtccaactcaaaaggttttagaacctaattttgtagttggtgccccatcatc 1612

                                             
Query: 72   cgctaggntacctgaagctggnagncagntaaa 104
             |||||| |||||||||| || || ||| ||||
Sbjct: 1613 tgctaggttacctgaagcgggtagtcagttaaa 1645
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 79/93 (84%)
 Strand = Plus / Minus

                                                                            
Query: 12       tacatatagtccaactcaaaaggttgtagaacctaattttgnagntggngccccgncnnc 71
                ||||||||||||||||||||||||| ||||||||||||||| || ||| |||||  |  |
Sbjct: 28139037 tacatatagtccaactcaaaaggttttagaacctaattttgtagttggtgccccatcatc 28138978

                                                 
Query: 72       cgctaggntacctgaagctggnagncagntaaa 104
                 |||||| |||||||||| || || ||| ||||
Sbjct: 28138977 tgctaggttacctgaagcgggtagtcagttaaa 28138945
to top
>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0604E01
          Length = 159049

 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 79/93 (84%)
 Strand = Plus / Minus

                                                                          
Query: 12     tacatatagtccaactcaaaaggttgtagaacctaattttgnagntggngccccgncnnc 71
              ||||||||||||||||||||||||| ||||||||||||||| || ||| |||||  |  |
Sbjct: 136532 tacatatagtccaactcaaaaggttttagaacctaattttgtagttggtgccccatcatc 136473

                                               
Query: 72     cgctaggntacctgaagctggnagncagntaaa 104
               |||||| |||||||||| || || ||| ||||
Sbjct: 136472 tgctaggttacctgaagcgggtagtcagttaaa 136440
to top
>dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0543D10
          Length = 134866

 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 79/93 (84%)
 Strand = Plus / Minus

                                                                         
Query: 12    tacatatagtccaactcaaaaggttgtagaacctaattttgnagntggngccccgncnnc 71
             ||||||||||||||||||||||||| ||||||||||||||| || ||| |||||  |  |
Sbjct: 22510 tacatatagtccaactcaaaaggttttagaacctaattttgtagttggtgccccatcatc 22451

                                              
Query: 72    cgctaggntacctgaagctggnagncagntaaa 104
              |||||| |||||||||| || || ||| ||||
Sbjct: 22450 tgctaggttacctgaagcgggtagtcagttaaa 22418
to top
>dbj|AK120773.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008J18, full
            insert sequence
          Length = 2626

 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 79/93 (84%)
 Strand = Plus / Plus

                                                                        
Query: 12   tacatatagtccaactcaaaaggttgtagaacctaattttgnagntggngccccgncnnc 71
            ||||||||||||||||||||||||| ||||||||||||||| || ||| |||||  |  |
Sbjct: 1553 tacatatagtccaactcaaaaggttttagaacctaattttgtagttggtgccccatcatc 1612

                                             
Query: 72   cgctaggntacctgaagctggnagncagntaaa 104
             |||||| |||||||||| || || ||| ||||
Sbjct: 1613 tgctaggttacctgaagcgggtagtcagttaaa 1645
to top
>dbj|AK099629.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013057D07, full
            insert sequence
          Length = 2439

 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 79/93 (84%)
 Strand = Plus / Plus

                                                                        
Query: 12   tacatatagtccaactcaaaaggttgtagaacctaattttgnagntggngccccgncnnc 71
            ||||||||||||||||||||||||| ||||||||||||||| || ||| |||||  |  |
Sbjct: 1553 tacatatagtccaactcaaaaggttttagaacctaattttgtagttggtgccccatcatc 1612

                                             
Query: 72   cgctaggntacctgaagctggnagncagntaaa 104
             |||||| |||||||||| || || ||| ||||
Sbjct: 1613 tgctaggttacctgaagcgggtagtcagttaaa 1645
to top
>dbj|AK069733.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030H12, full
            insert sequence
          Length = 1998

 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 79/93 (84%)
 Strand = Plus / Plus

                                                                        
Query: 12   tacatatagtccaactcaaaaggttgtagaacctaattttgnagntggngccccgncnnc 71
            ||||||||||||||||||||||||| ||||||||||||||| || ||| |||||  |  |
Sbjct: 1553 tacatatagtccaactcaaaaggttttagaacctaattttgtagttggtgccccatcatc 1612

                                             
Query: 72   cgctaggntacctgaagctggnagncagntaaa 104
             |||||| |||||||||| || || ||| ||||
Sbjct: 1613 tgctaggttacctgaagcgggtagtcagttaaa 1645
to top
>emb|AL031296.1|HS888M10 Human DNA sequence from clone RP5-888M10 on chromosome 1p36.11-36.31
            Contains the 3' end of the VPS13D gene for vacuolar
            protein sorting 13D (yeast) and a novel gene, complete
            sequence
          Length = 124874

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 24   aactcaaaaggttgtagaa 42
            |||||||||||||||||||
Sbjct: 4629 aactcaaaaggttgtagaa 4647


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 269,247
Number of Sequences: 3902068
Number of extensions: 269247
Number of successful extensions: 15756
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15744
Number of HSP's gapped (non-prelim): 12
length of query: 178
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 156
effective length of database: 17,147,199,772
effective search space: 2674963164432
effective search space used: 2674963164432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top