ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6k01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016619.1| Zea mays clone Contig452 mRNA sequence 387 e-104
2gb|AY104402.1| Zea mays PCO137047 mRNA sequence 387 e-104
3ref|XM_464667.1| Oryza sativa (japonica cultivar-group), mRNA 371 2e-99
4dbj|AK060032.1| Oryza sativa (japonica cultivar-group) cDNA clon... 371 2e-99
5dbj|AK066996.1| Oryza sativa (japonica cultivar-group) cDNA clon... 363 4e-97
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 123 7e-25
7dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic D... 123 7e-25
8gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 44 0.52
9ref|XM_482249.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.0
10gb|AC132262.2| Mus musculus chromosome 5 clone RP24-370J24, comp... 42 2.0
11ref|XM_450615.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.0
12ref|XM_450614.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.0
13gb|BT013806.1| Lycopersicon esculentum clone 132727F, mRNA sequence 42 2.0
14gb|AC104101.5| Mus musculus BAC clone RP24-377D2 from chromosome... 42 2.0
15gb|AC113506.12| Mus musculus chromosome 9, clone RP23-373O2, com... 42 2.0
16ref|XM_763899.1| Giardia lamblia ATCC 50803 hypothetical protein... 42 2.0
17ref|NM_008829.1| Mus musculus progesterone receptor (Pgr), mRNA 42 2.0
18dbj|AK142629.1| Mus musculus 10 days lactation, adult female mam... 42 2.0
19ref|NM_022847.1| Rattus norvegicus progesterone receptor (Pgr), ... 42 2.0
20dbj|AK054117.1| Mus musculus 2 days pregnant adult female oviduc... 42 2.0
21dbj|AK036862.1| Mus musculus adult female vagina cDNA, RIKEN ful... 42 2.0
22gb|AC114750.4| Homo sapiens BAC clone RP11-202B7 from 2, complet... 42 2.0
23ref|XM_579464.1| PREDICTED: Rattus norvegicus progesterone recep... 42 2.0
24dbj|AK120068.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
25dbj|AK068512.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
26dbj|AK068165.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
27gb|M68915.1|MUSPR Mouse progesterone receptor (PR) mRNA, complet... 42 2.0
28gb|L16922.1|RATPRGRECB Rat progesteron receptor gene, complete cds 42 2.0
29gb|AC150242.3| Rhinolophus ferrumequinum clone VMRC7-331J24, com... 40 8.1
30gb|AC116472.14| Mus musculus chromosome 7, clone RP23-384B23, co... 40 8.1
31gb|AC117621.7| Mus musculus chromosome 8, clone RP23-114B10, com... 40 8.1
32gb|AC114995.7| Mus musculus chromosome 8, clone RP23-171P5, comp... 40 8.1
33emb|AL162389.21| Human DNA sequence from clone RP11-380I20 on ch... 40 8.1
34gb|AC155227.3| Rhinolophus ferrumequinum clone VMRC7-4K1, comple... 40 8.1
35gb|BC099360.1| Xenopus laevis cDNA clone IMAGE:6877290, partial cds 40 8.1
36dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
37gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold 40 8.1
38dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
39emb|X78814.1|NPPSY N.pseudonarcissus mRNA for phytoene synthase 40 8.1
40gb|AC174163.2| Gallus gallus BAC clone CH261-69O1 from chromosom... 40 8.1
41emb|AL844846.11| Mouse DNA sequence from clone RP23-358I19 on ch... 40 8.1 
>gb|BT016619.1| Zea mays clone Contig452 mRNA sequence
          Length = 1911

 Score =  387 bits (195), Expect = e-104
 Identities = 474/567 (83%)
 Strand = Plus / Plus

                                                                        
Query: 26   aggtacactcttaactgctctggcggaactaggccatcaggctaccatagctgaggctgt 85
            ||||||||||||||| ||||| || ||||| |||||| |||||||||||  ||| |||||
Sbjct: 1131 aggtacactcttaaccgctcttgcagaacttggccatgaggctaccataaatgaagctgt 1190

                                                                        
Query: 86   tcgtcgatttaatgtctttctggaagacagagagacgccactcctcccaccagatgtccg 145
            |||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| ||
Sbjct: 1191 tcgtcgatttaatgtctttctggaagacagagagacaccactcctccctcccgatgttcg 1250

                                                                        
Query: 146  aaaggctgcatatgttgctctgatgcagacagtgaacaagtcaaacagaagtggctatga 205
            |||||| |||||||||||| ||||||||||||||| ||| ||||||| || |||||||||
Sbjct: 1251 aaaggcagcatatgttgctttgatgcagacagtgagcaaatcaaacaaaactggctatga 1310

                                                                        
Query: 206  atctcttctgaagatttacagggaaactgatctgagccaggaaaaagtccgtgttcttgg 265
            ||| || |||| ||| || |||||||| ||||| |||||||| ||||| |||||  | ||
Sbjct: 1311 atcactactgaggatatatagggaaaccgatctaagccaggagaaagttcgtgtgttagg 1370

                                                                        
Query: 266  ttctctggcatcatcccctgaccctgatgttgtgcgtgaagcgctgaatttcttgctatc 325
            |||| |||||||||||||||||| ||||||||| |||||||   |||||||| |  | ||
Sbjct: 1371 ttctttggcatcatcccctgaccatgatgttgtccgtgaagtattgaatttcatattgtc 1430

                                                                        
Query: 326  ttctgaggtaaggaatcaggattgcatatttgtgctccgtggagtgactgcagcagcgca 385
              ||||||| |||||||||||    |||||| ||||  | || |||| | |||  || ||
Sbjct: 1431 acctgaggtgaggaatcaggacgcaatatttttgctaagaggggtgagttcaggggcaca 1490

                                                                        
Query: 386  tgaggtggcatggacatggttgaaggaaaactgggactacatagcagagaccttcactgg 445
             ||||| ||||||  |||| |||||||||||||||| ||||||   |   ||| | ||||
Sbjct: 1491 cgaggtagcatggcaatggctgaaggaaaactgggattacatattgggagcctactctgg 1550

                                                                        
Query: 446  acacctgctcacctatttcatcaccgtcactgtctcaccgctcgccacagacgagaaggg 505
            |   ||||||||||||||| ||| | | |||||||| || || ||||| || ||  | ||
Sbjct: 1551 aactctgctcacctatttcgtcaacataactgtctcgccactggccaccgatgaacatgg 1610

                                                                        
Query: 506  tgacgaggcagaggagttcttcaagagcaggaccaaggcgagcatcgcgaggacggtgaa 565
            ||| ||||| |||||||| ||||||||||| |||||||||| |||||||||||| |||| 
Sbjct: 1611 tgatgaggcggaggagtttttcaagagcagaaccaaggcgaacatcgcgaggactgtgag 1670

                                       
Query: 566  gcagagcatcgagagggtgaggatcaa 592
            |||||||||||||||||||||||||||
Sbjct: 1671 gcagagcatcgagagggtgaggatcaa 1697
to top
>gb|AY104402.1| Zea mays PCO137047 mRNA sequence
          Length = 2125

 Score =  387 bits (195), Expect = e-104
 Identities = 474/567 (83%)
 Strand = Plus / Plus

                                                                        
Query: 26   aggtacactcttaactgctctggcggaactaggccatcaggctaccatagctgaggctgt 85
            ||||||||||||||| ||||| || ||||| |||||| |||||||||||  ||| |||||
Sbjct: 1169 aggtacactcttaaccgctcttgcagaacttggccatgaggctaccataaatgaagctgt 1228

                                                                        
Query: 86   tcgtcgatttaatgtctttctggaagacagagagacgccactcctcccaccagatgtccg 145
            |||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| ||
Sbjct: 1229 tcgtcgatttaatgtctttctggaagacagagagacaccactcctccctcccgatgttcg 1288

                                                                        
Query: 146  aaaggctgcatatgttgctctgatgcagacagtgaacaagtcaaacagaagtggctatga 205
            |||||| |||||||||||| ||||||||||||||||||| ||||||| || |||||||||
Sbjct: 1289 aaaggcagcatatgttgctttgatgcagacagtgaacaaatcaaacaaaactggctatga 1348

                                                                        
Query: 206  atctcttctgaagatttacagggaaactgatctgagccaggaaaaagtccgtgttcttgg 265
            ||| || |||| | | || |||||||| ||||| |||||||| ||||| |||||  | ||
Sbjct: 1349 atcactactgagggtatatagggaaaccgatctaagccaggagaaagttcgtgtgttagg 1408

                                                                        
Query: 266  ttctctggcatcatcccctgaccctgatgttgtgcgtgaagcgctgaatttcttgctatc 325
            |||| |||||||||||||||||| ||||||||| |||||||   |||||||| |  | ||
Sbjct: 1409 ttctttggcatcatcccctgaccatgatgttgtccgtgaagtattgaatttcatattgtc 1468

                                                                        
Query: 326  ttctgaggtaaggaatcaggattgcatatttgtgctccgtggagtgactgcagcagcgca 385
              ||||||| |||||||||||    |||||| ||||  | || |||| | |||  || ||
Sbjct: 1469 acctgaggtgaggaatcaggacgcaatatttttgctaagaggggtgagttcaggggcaca 1528

                                                                        
Query: 386  tgaggtggcatggacatggttgaaggaaaactgggactacatagcagagaccttcactgg 445
             ||||| ||||||  |||| |||||||||||||||| ||||||   |   ||| | ||||
Sbjct: 1529 cgaggtagcatggcaatggctgaaggaaaactgggattacatattgggagcctactctgg 1588

                                                                        
Query: 446  acacctgctcacctatttcatcaccgtcactgtctcaccgctcgccacagacgagaaggg 505
            |   ||||||||||||||| ||| | | |||||||| || || ||||| || ||  | ||
Sbjct: 1589 aactctgctcacctatttcgtcaacataactgtctcgccactggccaccgatgaacatgg 1648

                                                                        
Query: 506  tgacgaggcagaggagttcttcaagagcaggaccaaggcgagcatcgcgaggacggtgaa 565
            ||| ||||| |||||||| ||||||||||| |||||||||| |||||||||||| |||| 
Sbjct: 1649 tgatgaggcggaggagtttttcaagagcagaaccaaggcgaacatcgcgaggactgtgag 1708

                                       
Query: 566  gcagagcatcgagagggtgaggatcaa 592
            |||||||||||||||||||||||||||
Sbjct: 1709 gcagagcatcgagagggtgaggatcaa 1735
to top
>ref|XM_464667.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3020

 Score =  371 bits (187), Expect = 2e-99
 Identities = 472/567 (83%)
 Strand = Plus / Plus

                                                                        
Query: 26   aggtacactcttaactgctctggcggaactaggccatcaggctaccatagctgaggctgt 85
            ||||||||| |||||||||||||| ||||| |||||| | ||||| |||  ||| |||||
Sbjct: 2100 aggtacacttttaactgctctggcagaacttggccatgaagctacaataaatgaagctgt 2159

                                                                        
Query: 86   tcgtcgatttaatgtctttctggaagacagagagacgccactcctcccaccagatgtccg 145
             || ||||||||  ||||| ||||||| ||||| || ||||| ||||| |||||||| ||
Sbjct: 2160 acgccgatttaacatctttgtggaagatagagaaacaccactactccctccagatgttcg 2219

                                                                        
Query: 146  aaaggctgcatatgttgctctgatgcagacagtgaacaagtcaaacagaagtggctatga 205
            |||||| |||||||||||| ||||||||||||||||||| |||||||||   ||||||||
Sbjct: 2220 aaaggcggcatatgttgctttgatgcagacagtgaacaaatcaaacagagccggctatga 2279

                                                                        
Query: 206  atctcttctgaagatttacagggaaactgatctgagccaggaaaaagtccgtgttcttgg 265
            ||| ||  ||||||| || |  ||||||||||||||||||||||||||| |  || | ||
Sbjct: 2280 atcactattgaagatctataaagaaactgatctgagccaggaaaaagtcagaattttagg 2339

                                                                        
Query: 266  ttctctggcatcatcccctgaccctgatgttgtgcgtgaagcgctgaatttcttgctatc 325
            |||||| ||||| | |||||| ||||||||||| |||||  | ||| | ||| |||| ||
Sbjct: 2340 ttctctagcatcttgccctgatcctgatgttgttcgtgatacactggacttcatgctgtc 2399

                                                                        
Query: 326  ttctgaggtaaggaatcaggattgcatatttgtgctccgtggagtgactgcagcagcgca 385
              ||||||| ||||||||||| |  |||||| ||||  | |||||   |||||| |  ||
Sbjct: 2400 acctgaggtgaggaatcaggactctatatttttgcttagaggagtcggtgcagcgggaca 2459

                                                                        
Query: 386  tgaggtggcatggacatggttgaaggaaaactgggactacatagcagagaccttcactgg 445
            |||||||||||||||||||||||||||||| |||||||||||  |||| |||||| ||||
Sbjct: 2460 tgaggtggcatggacatggttgaaggaaaagtgggactacatttcagacaccttctctgg 2519

                                                                        
Query: 446  acacctgctcacctatttcatcaccgtcactgtctcaccgctcgccacagacgagaaggg 505
            |   || |||||||||||| |  ||  ||| |||||||||||   ||| || || | |||
Sbjct: 2520 aactcttctcacctatttcgtttccaccaccgtctcaccgctgcgcaccgatgaaatggg 2579

                                                                        
Query: 506  tgacgaggcagaggagttcttcaagagcaggaccaaggcgagcatcgcgaggacggtgaa 565
             ||||| || ||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct: 2580 cgacgacgcggaggagttcttcaagagcaggacgaaggccaacatcgcgaggacggtgaa 2639

                                       
Query: 566  gcagagcatcgagagggtgaggatcaa 592
            ||||||||||||||| |||||||||||
Sbjct: 2640 gcagagcatcgagagagtgaggatcaa 2666
to top
>dbj|AK060032.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H06, full
           insert sequence
          Length = 977

 Score =  371 bits (187), Expect = 2e-99
 Identities = 472/567 (83%)
 Strand = Plus / Plus

                                                                       
Query: 26  aggtacactcttaactgctctggcggaactaggccatcaggctaccatagctgaggctgt 85
           ||||||||| |||||||||||||| ||||| |||||| | ||||| |||  ||| |||||
Sbjct: 57  aggtacacttttaactgctctggcagaacttggccatgaagctacaataaatgaagctgt 116

                                                                       
Query: 86  tcgtcgatttaatgtctttctggaagacagagagacgccactcctcccaccagatgtccg 145
            || ||||||||  ||||| ||||||| ||||| || ||||| ||||| |||||||| ||
Sbjct: 117 acgccgatttaacatctttgtggaagatagagaaacaccactactccctccagatgttcg 176

                                                                       
Query: 146 aaaggctgcatatgttgctctgatgcagacagtgaacaagtcaaacagaagtggctatga 205
           |||||| |||||||||||| ||||||||||||||||||| |||||||||   ||||||||
Sbjct: 177 aaaggcggcatatgttgctttgatgcagacagtgaacaaatcaaacagagccggctatga 236

                                                                       
Query: 206 atctcttctgaagatttacagggaaactgatctgagccaggaaaaagtccgtgttcttgg 265
           ||| ||  ||||||| || |  ||||||||||||||||||||||||||| |  || | ||
Sbjct: 237 atcactattgaagatctataaagaaactgatctgagccaggaaaaagtcagaattttagg 296

                                                                       
Query: 266 ttctctggcatcatcccctgaccctgatgttgtgcgtgaagcgctgaatttcttgctatc 325
           |||||| ||||| | |||||| ||||||||||| |||||  | ||| | ||| |||| ||
Sbjct: 297 ttctctagcatcttgccctgatcctgatgttgttcgtgatacactggacttcatgctgtc 356

                                                                       
Query: 326 ttctgaggtaaggaatcaggattgcatatttgtgctccgtggagtgactgcagcagcgca 385
             ||||||| ||||||||||| |  |||||| ||||  | |||||   |||||| |  ||
Sbjct: 357 acctgaggtgaggaatcaggactctatatttttgcttagaggagtcggtgcagcgggaca 416

                                                                       
Query: 386 tgaggtggcatggacatggttgaaggaaaactgggactacatagcagagaccttcactgg 445
           |||||||||||||||||||||||||||||| |||||||||||  |||| |||||| ||||
Sbjct: 417 tgaggtggcatggacatggttgaaggaaaagtgggactacatttcagacaccttctctgg 476

                                                                       
Query: 446 acacctgctcacctatttcatcaccgtcactgtctcaccgctcgccacagacgagaaggg 505
           |   || |||||||||||| |  ||  ||| |||||||||||   ||| || || | |||
Sbjct: 477 aactcttctcacctatttcgtttccaccaccgtctcaccgctgcgcaccgatgaaatggg 536

                                                                       
Query: 506 tgacgaggcagaggagttcttcaagagcaggaccaaggcgagcatcgcgaggacggtgaa 565
            ||||| || ||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct: 537 cgacgacgcggaggagttcttcaagagcaggacgaaggccaacatcgcgaggacggtgaa 596

                                      
Query: 566 gcagagcatcgagagggtgaggatcaa 592
           ||||||||||||||| |||||||||||
Sbjct: 597 gcagagcatcgagagagtgaggatcaa 623
to top
>dbj|AK066996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089H24, full
            insert sequence
          Length = 3020

 Score =  363 bits (183), Expect = 4e-97
 Identities = 471/567 (83%)
 Strand = Plus / Plus

                                                                        
Query: 26   aggtacactcttaactgctctggcggaactaggccatcaggctaccatagctgaggctgt 85
            ||||||||| |||||||||||||| ||||| |||||| | ||||| |||  ||| |||||
Sbjct: 2100 aggtacacttttaactgctctggcagaacttggccatgaagctacaataaatgaagctgt 2159

                                                                        
Query: 86   tcgtcgatttaatgtctttctggaagacagagagacgccactcctcccaccagatgtccg 145
             || ||||||||  ||||| ||||||| ||||| || ||||| ||||| |||||||| ||
Sbjct: 2160 acgccgatttaacatctttgtggaagatagagaaacaccactactccctccagatgttcg 2219

                                                                        
Query: 146  aaaggctgcatatgttgctctgatgcagacagtgaacaagtcaaacagaagtggctatga 205
            | |||| |||||||||||| ||||||||||||||||||| |||||||||   ||||||||
Sbjct: 2220 ataggcggcatatgttgctttgatgcagacagtgaacaaatcaaacagagccggctatga 2279

                                                                        
Query: 206  atctcttctgaagatttacagggaaactgatctgagccaggaaaaagtccgtgttcttgg 265
            ||| ||  ||||||| || |  ||||||||||||||||||||||||||| |  || | ||
Sbjct: 2280 atcactattgaagatctataaagaaactgatctgagccaggaaaaagtcagaattttagg 2339

                                                                        
Query: 266  ttctctggcatcatcccctgaccctgatgttgtgcgtgaagcgctgaatttcttgctatc 325
            |||||| ||||| | |||||| ||||||||||| |||||  | ||| | ||| |||| ||
Sbjct: 2340 ttctctagcatcttgccctgatcctgatgttgttcgtgatacactggacttcatgctgtc 2399

                                                                        
Query: 326  ttctgaggtaaggaatcaggattgcatatttgtgctccgtggagtgactgcagcagcgca 385
              ||||||| ||||||||||| |  |||||| ||||  | |||||   |||||| |  ||
Sbjct: 2400 acctgaggtgaggaatcaggactctatatttttgcttagaggagtcggtgcagcgggaca 2459

                                                                        
Query: 386  tgaggtggcatggacatggttgaaggaaaactgggactacatagcagagaccttcactgg 445
            |||||||||||||||||||||||||||||| |||||||||||  |||| |||||| ||||
Sbjct: 2460 tgaggtggcatggacatggttgaaggaaaagtgggactacatttcagacaccttctctgg 2519

                                                                        
Query: 446  acacctgctcacctatttcatcaccgtcactgtctcaccgctcgccacagacgagaaggg 505
            |   || |||||||||||| |  ||  ||| |||||||||||   ||| || || | |||
Sbjct: 2520 aactcttctcacctatttcgtttccaccaccgtctcaccgctgcgcaccgatgaaatggg 2579

                                                                        
Query: 506  tgacgaggcagaggagttcttcaagagcaggaccaaggcgagcatcgcgaggacggtgaa 565
             ||||| || ||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct: 2580 cgacgacgcggaggagttcttcaagagcaggacgaaggccaacatcgcgaggacggtgaa 2639

                                       
Query: 566  gcagagcatcgagagggtgaggatcaa 592
            ||||||||||||||| |||||||||||
Sbjct: 2640 gcagagcatcgagagagtgaggatcaa 2666
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  123 bits (62), Expect = 7e-25
 Identities = 80/86 (93%)
 Strand = Plus / Plus

                                                                           
Query: 507     gacgaggcagaggagttcttcaagagcaggaccaaggcgagcatcgcgaggacggtgaag 566
               ||||| || ||||||||||||||||||||||| ||||| | |||||||||||||||||||
Sbjct: 6605177 gacgacgcggaggagttcttcaagagcaggacgaaggccaacatcgcgaggacggtgaag 6605236

                                         
Query: 567     cagagcatcgagagggtgaggatcaa 592
               |||||||||||||| |||||||||||
Sbjct: 6605237 cagagcatcgagagagtgaggatcaa 6605262



 Score =  109 bits (55), Expect = 1e-20
 Identities = 94/107 (87%)
 Strand = Plus / Plus

                                                                           
Query: 148     aggctgcatatgttgctctgatgcagacagtgaacaagtcaaacagaagtggctatgaat 207
               |||| |||||||||||| ||||||||||||||||||| |||||||||   ||||||||||
Sbjct: 6604437 aggcggcatatgttgctttgatgcagacagtgaacaaatcaaacagagccggctatgaat 6604496

                                                              
Query: 208     ctcttctgaagatttacagggaaactgatctgagccaggaaaaagtc 254
               | ||  ||||||| || |  |||||||||||||||||||||||||||
Sbjct: 6604497 cactattgaagatctataaagaaactgatctgagccaggaaaaagtc 6604543



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 105/125 (84%)
 Strand = Plus / Plus

                                                                           
Query: 26      aggtacactcttaactgctctggcggaactaggccatcaggctaccatagctgaggctgt 85
               ||||||||| |||||||||||||| ||||| |||||| | ||||| |||  ||| |||||
Sbjct: 6603995 aggtacacttttaactgctctggcagaacttggccatgaagctacaataaatgaagctgt 6604054

                                                                           
Query: 86      tcgtcgatttaatgtctttctggaagacagagagacgccactcctcccaccagatgtccg 145
                || ||||||||  ||||| ||||||| ||||| || ||||| ||||| |||||||| ||
Sbjct: 6604055 acgccgatttaacatctttgtggaagatagagaaacaccactactccctccagatgttcg 6604114

                    
Query: 146     aaagg 150
               |||||
Sbjct: 6604115 aaagg 6604119



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                           
Query: 384     catgaggtggcatggacatggttgaagg 411
               ||||||||||||||||||||||||||||
Sbjct: 6604876 catgaggtggcatggacatggttgaagg 6604903



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                        
Query: 264     ggttctctggcatcatcccctgaccctgatgttgtgcgtga 304
               |||||||| ||||| | |||||| ||||||||||| |||||
Sbjct: 6604655 ggttctctagcatcttgccctgatcctgatgttgttcgtga 6604695



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                       
Query: 409     aggaaaactgggactacatagcagagaccttcactggacacctgctcacctatttc 464
               ||||||| |||||||||||  |||| |||||| |||||   || ||||||||||||
Sbjct: 6604984 aggaaaagtgggactacatttcagacaccttctctggaactcttctcacctatttc 6605039
to top
>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0027A02
          Length = 140402

 Score =  123 bits (62), Expect = 7e-25
 Identities = 80/86 (93%)
 Strand = Plus / Plus

                                                                         
Query: 507   gacgaggcagaggagttcttcaagagcaggaccaaggcgagcatcgcgaggacggtgaag 566
             ||||| || ||||||||||||||||||||||| ||||| | |||||||||||||||||||
Sbjct: 39552 gacgacgcggaggagttcttcaagagcaggacgaaggccaacatcgcgaggacggtgaag 39611

                                       
Query: 567   cagagcatcgagagggtgaggatcaa 592
             |||||||||||||| |||||||||||
Sbjct: 39612 cagagcatcgagagagtgaggatcaa 39637



 Score =  109 bits (55), Expect = 1e-20
 Identities = 94/107 (87%)
 Strand = Plus / Plus

                                                                         
Query: 148   aggctgcatatgttgctctgatgcagacagtgaacaagtcaaacagaagtggctatgaat 207
             |||| |||||||||||| ||||||||||||||||||| |||||||||   ||||||||||
Sbjct: 38812 aggcggcatatgttgctttgatgcagacagtgaacaaatcaaacagagccggctatgaat 38871

                                                            
Query: 208   ctcttctgaagatttacagggaaactgatctgagccaggaaaaagtc 254
             | ||  ||||||| || |  |||||||||||||||||||||||||||
Sbjct: 38872 cactattgaagatctataaagaaactgatctgagccaggaaaaagtc 38918



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 105/125 (84%)
 Strand = Plus / Plus

                                                                         
Query: 26    aggtacactcttaactgctctggcggaactaggccatcaggctaccatagctgaggctgt 85
             ||||||||| |||||||||||||| ||||| |||||| | ||||| |||  ||| |||||
Sbjct: 38370 aggtacacttttaactgctctggcagaacttggccatgaagctacaataaatgaagctgt 38429

                                                                         
Query: 86    tcgtcgatttaatgtctttctggaagacagagagacgccactcctcccaccagatgtccg 145
              || ||||||||  ||||| ||||||| ||||| || ||||| ||||| |||||||| ||
Sbjct: 38430 acgccgatttaacatctttgtggaagatagagaaacaccactactccctccagatgttcg 38489

                  
Query: 146   aaagg 150
             |||||
Sbjct: 38490 aaagg 38494



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                         
Query: 384   catgaggtggcatggacatggttgaagg 411
             ||||||||||||||||||||||||||||
Sbjct: 39251 catgaggtggcatggacatggttgaagg 39278



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 264   ggttctctggcatcatcccctgaccctgatgttgtgcgtga 304
             |||||||| ||||| | |||||| ||||||||||| |||||
Sbjct: 39030 ggttctctagcatcttgccctgatcctgatgttgttcgtga 39070



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                     
Query: 409   aggaaaactgggactacatagcagagaccttcactggacacctgctcacctatttc 464
             ||||||| |||||||||||  |||| |||||| |||||   || ||||||||||||
Sbjct: 39359 aggaaaagtgggactacatttcagacaccttctctggaactcttctcacctatttc 39414
to top
>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 522     ttcttcaagagcaggaccaagg 543
               ||||||||||||||||||||||
Sbjct: 1878581 ttcttcaagagcaggaccaagg 1878602
to top
>ref|XM_482249.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2685

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 393  gcatggacatggttgaaggaaaactggga 421
            |||||| | ||||||||||||||||||||
Sbjct: 2404 gcatgggcctggttgaaggaaaactggga 2432
to top
>gb|AC132262.2| Mus musculus chromosome 5 clone RP24-370J24, complete sequence
          Length = 176466

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 318   ttgctatcttctgaggtaagg 338
             |||||||||||||||||||||
Sbjct: 62123 ttgctatcttctgaggtaagg 62103
to top
>ref|XM_450615.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2622

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 393  gcatggacatggttgaaggaaaactggga 421
            |||||| | ||||||||||||||||||||
Sbjct: 2344 gcatggtcctggttgaaggaaaactggga 2372
to top
>ref|XM_450614.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2984

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 393  gcatggacatggttgaaggaaaactggga 421
            |||||| | ||||||||||||||||||||
Sbjct: 2336 gcatggtcctggttgaaggaaaactggga 2364
to top
>gb|BT013806.1| Lycopersicon esculentum clone 132727F, mRNA sequence
          Length = 2861

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 555  aggacggtgaagcagagcatcgagagggt 583
            |||||| ||||||||||||| ||||||||
Sbjct: 2536 aggacgttgaagcagagcattgagagggt 2564
to top
>gb|AC104101.5| Mus musculus BAC clone RP24-377D2 from chromosome 5, complete sequence
          Length = 185414

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 318    ttgctatcttctgaggtaagg 338
              |||||||||||||||||||||
Sbjct: 126652 ttgctatcttctgaggtaagg 126672
to top
>gb|AC113506.12| Mus musculus chromosome 9, clone RP23-373O2, complete sequence
          Length = 171170

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 323    atcttctgaggtaaggaatca 343
              |||||||||||||||||||||
Sbjct: 114824 atcttctgaggtaaggaatca 114804
to top
>ref|XM_763899.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_180_10079_9540) partial mRNA
          Length = 540

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 510 gaggcagaggagttcttcaag 530
           |||||||||||||||||||||
Sbjct: 152 gaggcagaggagttcttcaag 132
to top
>ref|NM_008829.1| Mus musculus progesterone receptor (Pgr), mRNA
          Length = 2794

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 323  atcttctgaggtaaggaatca 343
            |||||||||||||||||||||
Sbjct: 1674 atcttctgaggtaaggaatca 1654
to top
>dbj|AK142629.1| Mus musculus 10 days lactation, adult female mammary gland cDNA,
           RIKEN full-length enriched library, clone:D730019K09
           product:progesterone receptor, full insert sequence
          Length = 1504

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 323 atcttctgaggtaaggaatca 343
           |||||||||||||||||||||
Sbjct: 633 atcttctgaggtaaggaatca 613
to top
>ref|NM_022847.1| Rattus norvegicus progesterone receptor (Pgr), mRNA
          Length = 3056

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 323  atcttctgaggtaaggaatca 343
            |||||||||||||||||||||
Sbjct: 1667 atcttctgaggtaaggaatca 1647
to top
>dbj|AK054117.1| Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN
           full-length enriched library, clone:E230020K18
           product:progesterone receptor, full insert sequence
          Length = 2384

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 323 atcttctgaggtaaggaatca 343
           |||||||||||||||||||||
Sbjct: 992 atcttctgaggtaaggaatca 972
to top
>dbj|AK036862.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched
            library, clone:9930019P03 product:PROGESTERONE RECEPTOR
            (PR) homolog [Mus musculus], full insert sequence
          Length = 3900

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 323  atcttctgaggtaaggaatca 343
            |||||||||||||||||||||
Sbjct: 1726 atcttctgaggtaaggaatca 1706
to top
>gb|AC114750.4| Homo sapiens BAC clone RP11-202B7 from 2, complete sequence
          Length = 83255

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 119   gacgccactcctcccaccaga 139
             |||||||||||||||||||||
Sbjct: 17095 gacgccactcctcccaccaga 17115
to top
>ref|XM_579464.1| PREDICTED: Rattus norvegicus progesterone receptor (Pgr), mRNA
          Length = 3064

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 323  atcttctgaggtaaggaatca 343
            |||||||||||||||||||||
Sbjct: 1676 atcttctgaggtaaggaatca 1656
to top
>dbj|AK120068.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N11, full
            insert sequence
          Length = 2975

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 393  gcatggacatggttgaaggaaaactggga 421
            |||||| | ||||||||||||||||||||
Sbjct: 2446 gcatgggcctggttgaaggaaaactggga 2474
to top
>dbj|AK068512.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013152F03, full
            insert sequence
          Length = 2232

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 393  gcatggacatggttgaaggaaaactggga 421
            |||||| | ||||||||||||||||||||
Sbjct: 1605 gcatggtcctggttgaaggaaaactggga 1633
to top
>dbj|AK068165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134N07, full
            insert sequence
          Length = 2985

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 393  gcatggacatggttgaaggaaaactggga 421
            |||||| | ||||||||||||||||||||
Sbjct: 2337 gcatggtcctggttgaaggaaaactggga 2365
to top
>gb|M68915.1|MUSPR Mouse progesterone receptor (PR) mRNA, complete cds
          Length = 2794

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 323  atcttctgaggtaaggaatca 343
            |||||||||||||||||||||
Sbjct: 1674 atcttctgaggtaaggaatca 1654
to top
>gb|L16922.1|RATPRGRECB Rat progesteron receptor gene, complete cds
          Length = 3056

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 323  atcttctgaggtaaggaatca 343
            |||||||||||||||||||||
Sbjct: 1667 atcttctgaggtaaggaatca 1647
to top
>gb|AC150242.3| Rhinolophus ferrumequinum clone VMRC7-331J24, complete sequence
          Length = 120894

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 186    tcaaacagaagtggctatgaatct 209
              |||||||||||||||| |||||||
Sbjct: 110030 tcaaacagaagtggctttgaatct 110007
to top
>gb|AC116472.14| Mus musculus chromosome 7, clone RP23-384B23, complete sequence
          Length = 216191

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 395    atggacatggttgaaggaaa 414
              ||||||||||||||||||||
Sbjct: 172405 atggacatggttgaaggaaa 172386
to top
>gb|AC117621.7| Mus musculus chromosome 8, clone RP23-114B10, complete sequence
          Length = 214933

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 444    ggacacctgctcacctattt 463
              ||||||||||||||||||||
Sbjct: 158167 ggacacctgctcacctattt 158186
to top
>gb|AC114995.7| Mus musculus chromosome 8, clone RP23-171P5, complete sequence
          Length = 242745

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 444  ggacacctgctcacctattt 463
            ||||||||||||||||||||
Sbjct: 4996 ggacacctgctcacctattt 5015
to top
>emb|AL162389.21| Human DNA sequence from clone RP11-380I20 on chromosome 9 Contains a
             small EDRK-rich factor 2 (SERF2) pseudogene, a ribosomal
             protein L36a pseudogene 6 (RPL36AP6) and two CpG islands,
             complete sequence
          Length = 157017

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 187   caaacagaagtggctatgaatctc 210
             |||||||| |||||||||||||||
Sbjct: 90172 caaacagatgtggctatgaatctc 90195
to top
>gb|AC155227.3| Rhinolophus ferrumequinum clone VMRC7-4K1, complete sequence
          Length = 160979

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 186   tcaaacagaagtggctatgaatct 209
             |||||||||||||||| |||||||
Sbjct: 58450 tcaaacagaagtggctttgaatct 58427
to top
>gb|BC099360.1| Xenopus laevis cDNA clone IMAGE:6877290, partial cds
          Length = 1400

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 ctggaagacagagagacgcc 124
           ||||||||||||||||||||
Sbjct: 683 ctggaagacagagagacgcc 664
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 377     agcagcgcatgaggtggcat 396
               ||||||||||||||||||||
Sbjct: 5028150 agcagcgcatgaggtggcat 5028169
to top
>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold
          Length = 1756392

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 186     tcaaacagaagtggctatgaatct 209
               |||||||||||||||| |||||||
Sbjct: 1391118 tcaaacagaagtggctttgaatct 1391095
to top
>dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0049I08
          Length = 144379

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 377   agcagcgcatgaggtggcat 396
             ||||||||||||||||||||
Sbjct: 69839 agcagcgcatgaggtggcat 69858
to top
>emb|X78814.1|NPPSY N.pseudonarcissus mRNA for phytoene synthase
          Length = 1548

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 394 catggacatggttgaaggaa 413
           ||||||||||||||||||||
Sbjct: 762 catggacatggttgaaggaa 781
to top
>gb|AC174163.2| Gallus gallus BAC clone CH261-69O1 from chromosome ul, complete
             sequence
          Length = 178322

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   gctctgatgcagacagtgaa 181
             ||||||||||||||||||||
Sbjct: 33340 gctctgatgcagacagtgaa 33359
to top
>emb|AL844846.11| Mouse DNA sequence from clone RP23-358I19 on chromosome 2, complete
             sequence
          Length = 209013

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   tttctggaagacagagagac 121
             ||||||||||||||||||||
Sbjct: 76965 tttctggaagacagagagac 76946


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,688,270
Number of Sequences: 3902068
Number of extensions: 5688270
Number of successful extensions: 89266
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89106
Number of HSP's gapped (non-prelim): 151
length of query: 593
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 570
effective length of database: 17,143,297,704
effective search space: 9771679691280
effective search space used: 9771679691280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top