>UVRA_LACLA (Q9CEL9) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 940

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 234 IRSEPHSMPDVGLEHDAYHAEEITSEQLITEYKLSMILNVADMRL 368
           I+ E H +PDV +  +  H     SE L   YK   I  V DMR+
Sbjct: 747 IKIEMHFLPDVYVPCEVCHGRRYNSETLEVHYKGKNISEVLDMRV 791

>PHYA_SOYBN (P42500) Phytochrome A|
          Length = 1131

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
 Frame = -1

Query: 256 MLCGSDLIQSNACSSSGLSRVAILLRCLIANKPDDNQFDSDRLAAEAAKTTR-------- 101
           +LCGS L   ++C +  ++ +  +   ++A   +DN+ D D  A +  KT R        
Sbjct: 310 ILCGSTLRAPHSCHAQYMANMDSIASLVLAVVVNDNEEDGDTDAVQPQKTERLWGLVVCH 369

Query: 100 -ATPRSCP 80
             TPR  P
Sbjct: 370 NTTPRFVP 377

>UVRA_STRP8 (Q8NZJ2) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 942

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +3

Query: 234 IRSEPHSMPDVGLEHDAYHAEEITSEQLITEYKLSMILNVADM 362
           I+ E H +PDV +  +  H     SE L   YK   I  V DM
Sbjct: 749 IKIEMHFLPDVYVPCEVCHGRRYNSETLEVHYKEKNIAEVLDM 791

>UVRA_STRP6 (Q5XA89) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 942

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +3

Query: 234 IRSEPHSMPDVGLEHDAYHAEEITSEQLITEYKLSMILNVADM 362
           I+ E H +PDV +  +  H     SE L   YK   I  V DM
Sbjct: 749 IKIEMHFLPDVYVPCEVCHGRRYNSETLEVHYKEKNIAEVLDM 791

>UVRA_STRP3 (Q8K5Z0) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 942

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +3

Query: 234 IRSEPHSMPDVGLEHDAYHAEEITSEQLITEYKLSMILNVADM 362
           I+ E H +PDV +  +  H     SE L   YK   I  V DM
Sbjct: 749 IKIEMHFLPDVYVPCEVCHGRRYNSETLEVHYKEKNIAEVLDM 791

>FRU_DROME (Q8IN81) Sex determination protein fruitless|
          Length = 955

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = -1

Query: 388  RQNSVNYSLISATFSIIL-SLYSVISCSDVISSAW-YASCSRPTS 260
            R ++++YS +    S  L +LY  +SC+ ++S+ W +A+  RP S
Sbjct: 873  RDHNIDYSTLFVQLSGTLPTLYRCVSCNKIVSNRWHHANIHRPQS 917

>UVRA_STRP1 (Q99Y84) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 942

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +3

Query: 234 IRSEPHSMPDVGLEHDAYHAEEITSEQLITEYKLSMILNVADM 362
           I+ E H +PDV +  +  H     SE L   YK   I  V DM
Sbjct: 749 IKIEMHFLPDVYVPCEVCHGRRYNSETLEVHYKGKNIAEVLDM 791

>UVRA_STRR6 (P63385) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 943

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +3

Query: 234 IRSEPHSMPDVGLEHDAYHAEEITSEQLITEYKLSMILNVADM 362
           I+ E H +PDV +  +  H     SE L   YK   I  V DM
Sbjct: 749 IKIEMHFLPDVYVACEVCHGTRYNSETLEVHYKEKNISQVLDM 791

>UVRA_STRPN (P63384) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 943

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +3

Query: 234 IRSEPHSMPDVGLEHDAYHAEEITSEQLITEYKLSMILNVADM 362
           I+ E H +PDV +  +  H     SE L   YK   I  V DM
Sbjct: 749 IKIEMHFLPDVYVACEVCHGTRYNSETLEVHYKEKNISQVLDM 791


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,836,615
Number of Sequences: 219361
Number of extensions: 1423792
Number of successful extensions: 3323
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3322
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5481822624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)