ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6j22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY110364.1| Zea mays CL5344_1 mRNA sequence 92 3e-15
2gb|BT017066.1| Zea mays clone EL01N0358F01.c mRNA sequence 84 6e-13
3emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4,... 82 2e-12
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
5dbj|AK071102.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
6gb|BT014172.1| Lycopersicon esculentum clone 133312F, mRNA sequence 42 2.1
7gb|AC120878.10| Mus musculus chromosome 1, clone RP24-548K2, com... 40 8.3
8gb|AC150993.4| Bos taurus BAC CH240-186K21 (Children's Hospital... 40 8.3
9gb|AC157799.3| Mus musculus chromosome 1, clone RP24-154L11, com... 40 8.3
10gb|AC091970.3| Homo sapiens chromosome 5 clone RP11-509B9, compl... 40 8.3
11gb|AC097479.3| Homo sapiens BAC clone RP11-115G5 from 4, complet... 40 8.3
12gb|AC023468.6| Homo sapiens BAC clone RP11-432O12 from 2, comple... 40 8.3
13gb|AC025580.8| Homo sapiens chromosome 15 clone RP11-519G16 map ... 40 8.3
14emb|AL357672.14| Human DNA sequence from clone RP11-437N14 on ch... 40 8.3
15gb|AF078105.1|AF078105 Cricetulus griseus site-1 protease of ste... 40 8.3
16gb|AC145912.4| Gallus gallus BAC clone CH261-48P17 from chromoso... 40 8.3 
>gb|AY110364.1| Zea mays CL5344_1 mRNA sequence
          Length = 1292

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 97/110 (88%), Gaps = 3/110 (2%)
 Strand = Plus / Plus

                                                                       
Query: 15  ttcatgcagnaccttcatgnatcccagggnacaatattcatgtcattgcttgctggtgcc 74
           ||||||||| ||||||||| ||||||||| ||||||||||||||| ||||||||||||| 
Sbjct: 388 ttcatgcag-accttcatg-atcccaggg-acaatattcatgtcactgcttgctggtgct 444

                                                             
Query: 75  ctattcgggcaactccggggcgtggctctggttgtctttgctgcctctgc 124
           ||||| |||||||| || ||| | || ||||| |||||||||||| ||||
Sbjct: 445 ctatttgggcaactgcgtggccttgcactggtggtctttgctgccactgc 494
to top
>gb|BT017066.1| Zea mays clone EL01N0358F01.c mRNA sequence
          Length = 876

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 96/110 (87%), Gaps = 3/110 (2%)
 Strand = Plus / Plus

                                                                       
Query: 15  ttcatgcagnaccttcatgnatcccagggnacaatattcatgtcattgcttgctggtgcc 74
           ||||||||| ||||||||| ||||||||| ||||||||||||||| ||||||||||||| 
Sbjct: 10  ttcatgcag-accttcatg-atcccaggg-acaatattcatgtcactgcttgctggtgct 66

                                                             
Query: 75  ctattcgggcaactccggggcgtggctctggttgtctttgctgcctctgc 124
           ||||| |||||| | || ||| | || ||||| |||||||||||| ||||
Sbjct: 67  ctatttgggcaattgcgtggccttgcgctggtggtctttgctgccactgc 116
to top
>emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009P12,
             complete sequence
          Length = 179644

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 97/112 (86%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                         
Query: 15    ttcatgcagnaccttcatgnatcccagggnacaatattcatgtcattgcttgctggtgcc 74
             ||||||||| ||||||||| ||||||||  ||||||||||||||||||||||| ||| | 
Sbjct: 86321 ttcatgcag-accttcatg-atcccagg-aacaatattcatgtcattgcttgccggttct 86265

                                                                 
Query: 75    ctattcgggcaactccggggcgtggctctggttgtctttgctgcctctgctg 126
             || || |||||||||||||| ||||| || || || ||||| ||||||||||
Sbjct: 86264 ctgtttgggcaactccggggtgtggccctcgtggtatttgcagcctctgctg 86213
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 97/112 (86%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                            
Query: 15       ttcatgcagnaccttcatgnatcccagggnacaatattcatgtcattgcttgctggtgcc 74
                ||||||||| ||||||||| ||||||||  ||||||||||||||||||||||| ||| | 
Sbjct: 29949569 ttcatgcag-accttcatg-atcccagg-aacaatattcatgtcattgcttgccggttct 29949513

                                                                    
Query: 75       ctattcgggcaactccggggcgtggctctggttgtctttgctgcctctgctg 126
                || || |||||||||||||| ||||| || || || ||||| ||||||||||
Sbjct: 29949512 ctgtttgggcaactccggggtgtggccctcgtggtatttgcagcctctgctg 29949461
to top
>dbj|AK071102.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077L10, full
           insert sequence
          Length = 1310

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 97/112 (86%), Gaps = 3/112 (2%)
 Strand = Plus / Plus

                                                                       
Query: 15  ttcatgcagnaccttcatgnatcccagggnacaatattcatgtcattgcttgctggtgcc 74
           ||||||||| ||||||||| ||||||||  ||||||||||||||||||||||| ||| | 
Sbjct: 390 ttcatgcag-accttcatg-atcccagg-aacaatattcatgtcattgcttgccggttct 446

                                                               
Query: 75  ctattcgggcaactccggggcgtggctctggttgtctttgctgcctctgctg 126
           || || |||||||||||||| ||||| || || || ||||| ||||||||||
Sbjct: 447 ctgtttgggcaactccggggtgtggccctcgtggtatttgcagcctctgctg 498
to top
>gb|BT014172.1| Lycopersicon esculentum clone 133312F, mRNA sequence
          Length = 1365

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 348 aatgttgctgatatgagacta 368
           |||||||||||||||||||||
Sbjct: 231 aatgttgctgatatgagacta 251
to top
>gb|AC120878.10| Mus musculus chromosome 1, clone RP24-548K2, complete sequence
          Length = 232085

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 395    gattcaggaacaggatgtct 414
              ||||||||||||||||||||
Sbjct: 107599 gattcaggaacaggatgtct 107580
to top
>gb|AC150993.4| Bos taurus  BAC CH240-186K21 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 182043

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 488    tttgcatgtattgttggcat 507
              ||||||||||||||||||||
Sbjct: 170809 tttgcatgtattgttggcat 170790
to top
>gb|AC157799.3| Mus musculus chromosome 1, clone RP24-154L11, complete sequence
          Length = 159548

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 395    gattcaggaacaggatgtct 414
              ||||||||||||||||||||
Sbjct: 145419 gattcaggaacaggatgtct 145400
to top
>gb|AC091970.3| Homo sapiens chromosome 5 clone RP11-509B9, complete sequence
          Length = 170119

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    tgtctttgctgcctctgctg 126
              ||||||||||||||||||||
Sbjct: 102602 tgtctttgctgcctctgctg 102583
to top
>gb|AC097479.3| Homo sapiens BAC clone RP11-115G5 from 4, complete sequence
          Length = 137848

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 426   tgctagacttattataccta 445
             ||||||||||||||||||||
Sbjct: 21517 tgctagacttattataccta 21536
to top
>gb|AC023468.6| Homo sapiens BAC clone RP11-432O12 from 2, complete sequence
          Length = 170871

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 528   aagcataacaaagtaaatcatctt 551
             |||||||||||||||| |||||||
Sbjct: 42833 aagcataacaaagtaattcatctt 42856
to top
>gb|AC025580.8| Homo sapiens chromosome 15 clone RP11-519G16 map 15q21.1, complete
             sequence
          Length = 200803

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     attcatgtcattttcatgca 22
             ||||||||||||||||||||
Sbjct: 22707 attcatgtcattttcatgca 22726
to top
>emb|AL357672.14| Human DNA sequence from clone RP11-437N14 on chromosome 1, complete
              sequence
          Length = 168614

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      attcatgtcattttcatgca 22
              ||||||||||||||||||||
Sbjct: 145906 attcatgtcattttcatgca 145887
to top
>gb|AF078105.1|AF078105 Cricetulus griseus site-1 protease of sterol regulatory element
            binding proteins mRNA, complete cds
          Length = 4198

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 120  tctgctgcgagcctatcaga 139
            ||||||||||||||||||||
Sbjct: 1787 tctgctgcgagcctatcaga 1806
to top
>gb|AC145912.4| Gallus gallus BAC clone CH261-48P17 from chromosome unknown,
           complete sequence
          Length = 183092

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   atattcatgtcattttcatg 20
           ||||||||||||||||||||
Sbjct: 101 atattcatgtcattttcatg 120


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,856,246
Number of Sequences: 3902068
Number of extensions: 4856246
Number of successful extensions: 83570
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83522
Number of HSP's gapped (non-prelim): 48
length of query: 613
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 590
effective length of database: 17,143,297,704
effective search space: 10114545645360
effective search space used: 10114545645360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top