ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags6j21 |
|---|---|
| Clone Library Name | barley_pub |
>YCF44_PORPU (P51363) Hypothetical 50.2 kDa protein ycf44 (ORF437)| Length = 437 Score = 113 bits (283), Expect = 2e-25 Identities = 59/153 (38%), Positives = 86/153 (56%) Frame = +3 Query: 3 LYAFKGLAGRYAPIGVHVAMIFVMAGATLSATGSFKGSVDVPQGLNFVIGDIMKPKGIFS 182 +Y +KGL GR API VH ++I ++ G+ L F VP G F + +I+ G FS Sbjct: 158 IYCYKGLLGRLAPIFVHASIILLLIGSVLGLVSGFSAQEMVPSGELFRLQNIIA-SGQFS 216 Query: 183 VAPDVFNTEVHVNRFYMEYYDSGEVSQFYSDLSLFDLDGKEVMRRTIKVNDPLRYGGITI 362 P F+ V N F +EY +SQF+SD+S+ D +G E+ TI VN PL++ G+TI Sbjct: 217 YIPQDFSARV--NNFIIEYNQDNSISQFFSDISILDTEGTELKHSTIHVNSPLQFKGLTI 274 Query: 363 YQTDWGFSALQVKKNGEGPFNLAMAPLQLNGNK 461 YQTDW A+++K N + + + L NK Sbjct: 275 YQTDWDIIAIRIKINNTDTLQIPLKKVVLPNNK 307
>YCF44_ODOSI (P49539) Hypothetical 43.8 kDa protein ycf44 (ORF382)| Length = 382 Score = 105 bits (261), Expect = 9e-23 Identities = 58/161 (36%), Positives = 90/161 (55%) Frame = +3 Query: 3 LYAFKGLAGRYAPIGVHVAMIFVMAGATLSATGSFKGSVDVPQGLNFVIGDIMKPKGIFS 182 +Y +KGL GR API VH +MI ++ GA A FK +P+ F + +I+ G + Sbjct: 147 VYCYKGLIGRIAPIIVHFSMILILIGAIFGALNGFKAQELIPKTEAFHVQNILS-NGQLT 205 Query: 183 VAPDVFNTEVHVNRFYMEYYDSGEVSQFYSDLSLFDLDGKEVMRRTIKVNDPLRYGGITI 362 P V + VN F++ Y V+QFYSD+S+ + +G E++R+TI VN P++Y I Sbjct: 206 RIPKVVS---RVNDFWITYTKQATVAQFYSDVSILNTEGNEIVRKTIFVNSPIKYNNIDF 262 Query: 363 YQTDWGFSALQVKKNGEGPFNLAMAPLQLNGNKKLYXTFLP 485 YQTDW L+V+ + + L GN K++ T++P Sbjct: 263 YQTDWNVIGLRVQNDTSSILQYPLINLTNAGN-KVWVTWIP 302
>YCF44_GUITH (O78437) Hypothetical 47.8 kDa protein ycf44| Length = 414 Score = 83.6 bits (205), Expect = 3e-16 Identities = 53/158 (33%), Positives = 85/158 (53%), Gaps = 2/158 (1%) Frame = +3 Query: 3 LYAFKGLAGRYAPIGVHVAMIFVMAGATLSATGSFKGSVDVPQGLNFVIGDIMKPKGIFS 182 +YA+KG+ GR +PI VH +++ V+ G+ LS T F++ + KP Sbjct: 149 VYAYKGIFGRVSPIIVHFSLVIVLIGSMLSTTQGRTQEA-------FIVVNQEKP----- 196 Query: 183 VAPDVFNT-EVHVNRFYMEYYDSGEVSQFYSDLSLFDLDGKEVMRRTIKVNDPLRYGGIT 359 V +T E +VN F + Y G + QFYSDL L ++ ++TI VN+PL Y IT Sbjct: 197 ----VLDTYEAYVNDFKIAYNSQGLIDQFYSDLILETRQASKI-QKTIYVNEPLNYSNIT 251 Query: 360 IYQTDWGFSALQVKKNGEGPFNLAMAPLQL-NGNKKLY 470 IYQTDW L + + + +++ + ++L NG++ Y Sbjct: 252 IYQTDWNIDNLVICIDNQNYYSIPLQFIELPNGSESKY 289
>YCF44_CYACA (O19913) Hypothetical 45.3 kDa protein ycf44| Length = 396 Score = 50.8 bits (120), Expect = 2e-06 Identities = 33/164 (20%), Positives = 77/164 (46%) Frame = +3 Query: 3 LYAFKGLAGRYAPIGVHVAMIFVMAGATLSATGSFKGSVDVPQGLNFVIGDIMKPKGIFS 182 +Y F + P+ +H+++I ++ G+ + A F +P I +++ G S Sbjct: 152 IYTFDKNLDKAGPLLIHLSLILILLGSAIHAFNDFIAQEMIPIYEVSHIQNVIS-SGRIS 210 Query: 183 VAPDVFNTEVHVNRFYMEYYDSGEVSQFYSDLSLFDLDGKEVMRRTIKVNDPLRYGGITI 362 P + + + F +E+ + V QF ++L++ + G+ + + + VN PL Y + I Sbjct: 211 KIPQTISLKA--SAFTVEHENEKVVKQFITNLAMLNSKGEVLKQGLVSVNHPLVYKQVYI 268 Query: 363 YQTDWGFSALQVKKNGEGPFNLAMAPLQLNGNKKLYXTFLPLED 494 +Q DW ++V + + ++ N N++ + +P ++ Sbjct: 269 FQMDWKLFGIRVNYGKNKIYEFPVQKIEAN-NEQQWSCTIPAKN 311
>RESB_BACSU (P35161) Protein resB| Length = 542 Score = 37.4 bits (85), Expect = 0.023 Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 17/142 (11%) Frame = +3 Query: 3 LYAFKGLAGRYAPIGVHVAMIFVMAGATLSATGSF--KGSVDVPQGLNFVI----GDIMK 164 + A KG R+ P H+ +I + GA L ++ V +G I G Sbjct: 201 ILAEKGRFSRWGPYVNHIGLIIFLIGAMLRFVPGMYVDETLWVREGETAAIPGTDGKYYL 260 Query: 165 PKGIFSVAPDVFNTEVHVNRFYMEYYDSGEVSQ-FYSDLSLFDLDGK----------EVM 311 FSV TE V ++ G V++ F +D L+ +GK +V Sbjct: 261 KNNQFSVETYNSKTEKKVFADAIDRVGDGRVAKNFQTDAVLYKREGKIVYGEKPKLEKVT 320 Query: 312 RRTIKVNDPLRYGGITIYQTDW 377 I+VN PLR+ ++YQ D+ Sbjct: 321 EEDIRVNQPLRFDSFSVYQVDY 342
>AGLU_HORVU (Q43763) Alpha-glucosidase precursor (EC 3.2.1.20) (Maltase)| Length = 877 Score = 32.7 bits (73), Expect = 0.56 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 29/144 (20%) Frame = +3 Query: 132 GLNFV----IGDIMKPKGIFSVAPDVFNTEVHVNRFYME----YYDSGEVSQFYSDLSLF 287 G NFV GD+ P + A + + E+ + R + + D E+S FY+ + Sbjct: 392 GTNFVGNVWPGDVYFPDFMHPAAAEFWAREISLFRRTIPVDGLWIDMNEISNFYNPEPMN 451 Query: 288 DLD-----------GKEVMRRTIKVNDPL--RYGGITIYQTDWGFSALQVKKNGEG---- 416 LD G+ + +T++ PL YGG+T Y+ F L+ + G G Sbjct: 452 ALDDPPYRINNDGTGRPINNKTVR---PLAVHYGGVTEYEEHNLFGLLEARATGRGVLRD 508 Query: 417 ----PFNLAMAPLQLNGNKKLYXT 476 PF L+ + +G Y T Sbjct: 509 TGRRPFVLSRSTFVGSGRYTAYWT 532
>NRFI_WOLSU (Q9S1E4) Protein nrfI| Length = 902 Score = 32.3 bits (72), Expect = 0.73 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = +3 Query: 237 YYDSGEVSQFYSDLSLFDLDGKEVMRRTIKVNDPLRYGGITIYQTDW 377 Y S S++ S ++L D K + TI +N+ L YGG +QT + Sbjct: 235 YPGSRSPSEYTSHVALVDPSQKVALEETIFMNNTLSYGGYKFFQTSY 281
>YD5A_METJA (P58018) Hypothetical protein MJ1351.1| Length = 364 Score = 30.4 bits (67), Expect = 2.8 Identities = 18/46 (39%), Positives = 25/46 (54%) Frame = +3 Query: 48 VHVAMIFVMAGATLSATGSFKGSVDVPQGLNFVIGDIMKPKGIFSV 185 +H A+ GA L+ G F +V PQGL F+ GDI K +F + Sbjct: 269 LHTAIRLAYGGAMLN--GPFAIAVGTPQGLIFMNGDIEKDTTMFGL 312
>MURD_BRUSU (Q8FZP2) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC| 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) Length = 467 Score = 30.4 bits (67), Expect = 2.8 Identities = 17/61 (27%), Positives = 29/61 (47%) Frame = +3 Query: 3 LYAFKGLAGRYAPIGVHVAMIFVMAGATLSATGSFKGSVDVPQGLNFVIGDIMKPKGIFS 182 L +F GLA R +G ++FV +A + PQ + +++G + K GI S Sbjct: 311 LKSFPGLAHRMEQVGRRGKVLFVNDSKATNAEATAPALSSFPQNIYWIVGGVPKAGGINS 370 Query: 183 V 185 + Sbjct: 371 L 371
>MURD_BRUME (Q8YI68) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC| 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) Length = 467 Score = 30.4 bits (67), Expect = 2.8 Identities = 17/61 (27%), Positives = 29/61 (47%) Frame = +3 Query: 3 LYAFKGLAGRYAPIGVHVAMIFVMAGATLSATGSFKGSVDVPQGLNFVIGDIMKPKGIFS 182 L +F GLA R +G ++FV +A + PQ + +++G + K GI S Sbjct: 311 LKSFPGLAHRMEQVGRRGKVLFVNDSKATNAEATAPALSSFPQNIYWIVGGVPKAGGINS 370 Query: 183 V 185 + Sbjct: 371 L 371
>MURD_BRUAB (Q57C76) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC| 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) Length = 467 Score = 30.4 bits (67), Expect = 2.8 Identities = 17/61 (27%), Positives = 29/61 (47%) Frame = +3 Query: 3 LYAFKGLAGRYAPIGVHVAMIFVMAGATLSATGSFKGSVDVPQGLNFVIGDIMKPKGIFS 182 L +F GLA R +G ++FV +A + PQ + +++G + K GI S Sbjct: 311 LKSFPGLAHRMEQVGRRGKVLFVNDSKATNAEATAPALSSFPQNIYWIVGGVPKAGGINS 370 Query: 183 V 185 + Sbjct: 371 L 371
>PLXB3_HUMAN (Q9ULL4) Plexin-B3 precursor| Length = 1909 Score = 30.0 bits (66), Expect = 3.6 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = -2 Query: 456 CHSVARVPWPS*KVLHHFSSPVMLKTPSPFGI 361 CH+ P +LHHF +PVM + P PFG+ Sbjct: 2 CHAAQETP-----LLHHFMAPVMARWP-PFGL 27
>YE95_SCHPO (O13767) Hypothetical protein C17A5.05c in chromosome I| Length = 247 Score = 30.0 bits (66), Expect = 3.6 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = -1 Query: 490 SSGKNVXYSFLLPFSCKGAMAKLKGPSPFFFTCNAENPQSVWYIVIPPYLK 338 SS ++ Y ++ C A+ L PS F TC A + Q W +V+ P+ K Sbjct: 154 SSAEDGIYDLVI---CSFALHLLTEPSKLFSTCYALSVQCRWLLVLGPHKK 201
>CADH3_HUMAN (P22223) Cadherin-3 precursor (Placental-cadherin) (P-cadherin)| Length = 829 Score = 29.6 bits (65), Expect = 4.7 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 6/76 (7%) Frame = +3 Query: 252 EVSQFYSDLSLFDLDGKEVM--RRTIKVNDPLRYGG----ITIYQTDWGFSALQVKKNGE 413 E + F +D F + E + RR++K +PL+ + ++ DW + + V +NG+ Sbjct: 62 EPALFSTDNDDFTVRNGETVQERRSLKERNPLKIFPSKRILRRHKRDWVVAPISVPENGK 121 Query: 414 GPFNLAMAPLQLNGNK 461 GPF + L+ N ++ Sbjct: 122 GPFPQRLNQLKSNKDR 137
>RPOC_MYCMS (Q6MRX5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1255 Score = 29.3 bits (64), Expect = 6.2 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 6/59 (10%) Frame = +3 Query: 39 PIGVHVAMIFVMAGATLSA----TGSFKGSVDVPQGLNFV--IGDIMKPKGIFSVAPDV 197 P+GV A G L+ TG G+VD+ QGL + + D+ PKG ++ +V Sbjct: 976 PVGVIAAQSIGEPGTQLTMRNFHTGGVAGNVDITQGLPRIKELLDVTTPKGAVAIISEV 1034
>RIBB_DEHMU (O68249) 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP| synthase) Length = 356 Score = 28.9 bits (63), Expect = 8.1 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%) Frame = +3 Query: 51 HVAMIFVMAGATLSATGSFKGSVDV----PQGLNFVIGDIMKPKGIFSVAP--DVFNTEV 212 H+ + G L G +GSVD+ QG + VI +IMK G + P D+F + Sbjct: 136 HIFPLIAKEGGALVRIGHTEGSVDLCRLAGQGDSAVICEIMKEDGTMARRPDLDIFCAKH 195 Query: 213 HVNRFYM 233 +N Y+ Sbjct: 196 ELNIVYI 202 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,093,187 Number of Sequences: 219361 Number of extensions: 1646144 Number of successful extensions: 4439 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4346 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4433 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3581144924 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
