ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6j21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK100054.1| Oryza sativa (japonica cultivar-group) cDNA clon... 353 4e-94
2gb|AC133450.6| Oryza sativa chromosome 3 BAC OSJNBa0072F13 genom... 216 5e-53
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 216 5e-53
4gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genom... 216 5e-53
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 216 5e-53
6ref|NM_103828.2| Arabidopsis thaliana unknown protein AT1G49380 ... 76 1e-10
7gb|AC007504.3| Arabidopsis thaliana chromosome I BAC F13F21 geno... 76 1e-10
8gb|AY086251.1| Arabidopsis thaliana clone 230 mRNA, complete seq... 76 1e-10
9dbj|AK117293.1| Arabidopsis thaliana At1g49380 mRNA for unknown ... 76 1e-10
10gb|BT013135.1| Lycopersicon esculentum clone 114437F, mRNA sequence 56 1e-04
11gb|AC130532.3| Mus musculus BAC clone RP23-189G24 from 7, comple... 44 0.44
12gb|DQ025508.1| Etheostoma wapiti isolate NwapB cytochrome b (cyt... 40 6.8
13gb|DQ025507.1| Etheostoma rubrum isolate NrubC cytochrome b (cyt... 40 6.8
14gb|DQ025506.1| Etheostoma rubrum isolate NrubB cytochrome b (cyt... 40 6.8
15gb|DQ025505.1| Etheostoma moorei isolate NmorA cytochrome b (cyt... 40 6.8
16gb|DQ025501.1| Etheostoma chlorobranchium isolate NchbC cytochro... 40 6.8
17gb|DQ025500.1| Etheostoma camurum isolate NcamC cytochrome b (cy... 40 6.8
18gb|DQ025499.1| Etheostoma camurum isolate NcamB cytochrome b (cy... 40 6.8
19gb|DQ025498.1| Etheostoma bellum isolate NblmB cytochrome b (cyt... 40 6.8
20gb|AY742668.1| Etheostoma wapiti isolate NwapA cytochrome b (cyt... 40 6.8
21gb|AY742667.1| Etheostoma vulneratum isolate NvulB cytochrome b ... 40 6.8
22gb|AY742666.1| Etheostoma vulneratum isolate NvulA cytochrome b ... 40 6.8
23gb|AY742657.1| Etheostoma chlorobranchium isolate NchbA cytochro... 40 6.8
24gb|AY742656.1| Etheostoma bellum isolate NblmA cytochrome b (cyt... 40 6.8
25gb|AE010221.1| Pyrococcus furiosus DSM 3638, section 96 of 173 o... 40 6.8
26ref|XM_414832.1| PREDICTED: Gallus gallus similar to RIKEN cDNA ... 40 6.8
27gb|AY374260.1| Etheostoma bellum cytochrome b (cytb) gene, parti... 40 6.8
28gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genom... 40 6.8
29gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 6.8
30gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 40 6.8
31ref|XM_543066.2| PREDICTED: Canis familiaris similar to RAE1 RNA... 40 6.8
32gb|AF386536.1| Etheostoma camurum isolate EcamA cytochrome b gen... 40 6.8
33gb|AF274446.1|AF274446 Etheostoma rubrum cytochrome b (cytb) gen... 40 6.8
34gb|AF274445.1|AF274445 Etheostoma moorei cytochrome b (cytb) gen... 40 6.8
35dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
36dbj|AP003052.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
37dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
38gb|AE005115.1| Halobacterium sp. NRC-1 section 146 of 170 of the... 40 6.8
39emb|CT573071.1| Kuenenia stuttgartiensis genome fragment KUST_E ... 40 6.8
40gb|AF045348.1|AF045348 Etheostoma camurum cytochrome b (cytb) ge... 40 6.8
41emb|CT573021.3| Pig DNA sequence from clone XX-BE155F1 on chromo... 40 6.8 
>dbj|AK100054.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157P08, full
            insert sequence
          Length = 2141

 Score =  353 bits (178), Expect = 4e-94
 Identities = 414/493 (83%)
 Strand = Plus / Plus

                                                                        
Query: 4    tgtatgccttcaagggcctggctggtcggtacgcgcccatcggcgtgcacgtggcgatga 63
            ||||||| ||||| || |||||||||||||  ||||| ||||| |||||| | || ||||
Sbjct: 835  tgtatgctttcaaaggactggctggtcggtttgcgcctatcggtgtgcacatagctatga 894

                                                                        
Query: 64   tttttgtcatggcaggtgccacactttctgcgaccggaagctttaagggctcagtggatg 123
            ||||  |||||||||||||||| |||   || || || |||||||| || || |||||||
Sbjct: 895  ttttcatcatggcaggtgccacgcttagcgcaacagggagctttaaaggatcggtggatg 954

                                                                        
Query: 124  ttcctcaaggactgaatttcgtcattggagatatcatgaaacccaaaggcattttctcgg 183
            | || |||||  |||| || || || |||||| | |||||||| |||||  || ||||  
Sbjct: 955  taccccaagggttgaactttgtaatcggagatgtgatgaaacctaaaggagttctctctt 1014

                                                                        
Query: 184  tcgcgccggatgttttcaatacggaagtccatgtcaaccggttctacatggagtactatg 243
            | | ||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 1015 ttgtgcctgatgtttttaatactgaagtccatgtcaatcggttctacatggagtactatg 1074

                                                                        
Query: 244  acagtggagaggtttcgcaattttatagcgacctttcacttttcgaccttgatggcaaag 303
            | |||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 1075 atagtggagaggtttcacaattctatagcgatctttcacttttcgaccttgatggcaaag 1134

                                                                        
Query: 304  aagttatgagacggacgatcaaagtgaatgatcccttgaggtatggtgggatcacgatat 363
            | || |||||   ||| ||||||||||| || |||||||||||||||||| |||| || |
Sbjct: 1135 aggtcatgaggaagactatcaaagtgaacgaccccttgaggtatggtggggtcacaatct 1194

                                                                        
Query: 364  accaaacggactgggggttttcagcattacaggtgaagaaaaatggtgaaggacctttca 423
            ||||||| || ||||| ||||||||||| || || ||||||||||||||||| |||||||
Sbjct: 1195 accaaaccgattggggattttcagcattgcaagtaaagaaaaatggtgaaggtcctttca 1254

                                                                        
Query: 424  acttggccatggcacccttgcaactgaatggcaataaaaagctatacngaacattcttgc 483
            | ||||||||||| |||||| || |||||||  |||| ||| |||   ||||||| ||||
Sbjct: 1255 atttggccatggcccccttgaaattgaatggtgataagaagttatttggaacattgttgc 1314

                         
Query: 484  cacttgaagactc 496
            |||||||| ||||
Sbjct: 1315 cacttgaaaactc 1327
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>gb|AC133450.6| Oryza sativa chromosome 3 BAC OSJNBa0072F13 genomic sequence, complete
              sequence
          Length = 150743

 Score =  216 bits (109), Expect = 5e-53
 Identities = 210/244 (86%)
 Strand = Plus / Plus

                                                                          
Query: 253    aggtttcgcaattttatagcgacctttcacttttcgaccttgatggcaaagaagttatga 312
              ||||||| ||||| |||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct: 122725 aggtttcacaattctatagcgatctttcacttttcgaccttgatggcaaagaggtcatga 122784

                                                                          
Query: 313    gacggacgatcaaagtgaatgatcccttgaggtatggtgggatcacgatataccaaacgg 372
              |   ||| ||||||||||| || |||||||||||||||||| |||| || |||||||| |
Sbjct: 122785 ggaagactatcaaagtgaacgaccccttgaggtatggtggggtcacaatctaccaaaccg 122844

                                                                          
Query: 373    actgggggttttcagcattacaggtgaagaaaaatggtgaaggacctttcaacttggcca 432
              | ||||| ||||||||||| || || ||||||||||||||||| |||||||| |||||||
Sbjct: 122845 attggggattttcagcattgcaagtaaagaaaaatggtgaaggtcctttcaatttggcca 122904

                                                                          
Query: 433    tggcacccttgcaactgaatggcaataaaaagctatacngaacattcttgccacttgaag 492
              |||| |||||| || |||||||  |||| ||| |||   ||||||| |||||||||||| 
Sbjct: 122905 tggcccccttgaaattgaatggtgataagaagttatttggaacattgttgccacttgaaa 122964

                  
Query: 493    actc 496
              ||||
Sbjct: 122965 actc 122968



 Score =  145 bits (73), Expect = 2e-31
 Identities = 208/253 (82%)
 Strand = Plus / Plus

                                                                          
Query: 4      tgtatgccttcaagggcctggctggtcggtacgcgcccatcggcgtgcacgtggcgatga 63
              ||||||| ||||| || |||||||||||||  ||||| ||||| |||||| | || ||||
Sbjct: 122399 tgtatgctttcaaaggactggctggtcggtttgcgcctatcggtgtgcacatagctatga 122458

                                                                          
Query: 64     tttttgtcatggcaggtgccacactttctgcgaccggaagctttaagggctcagtggatg 123
              ||||  |||||||||||||||| |||   || || || |||||||| || || |||||||
Sbjct: 122459 ttttcatcatggcaggtgccacgcttagcgcaacagggagctttaaaggatcggtggatg 122518

                                                                          
Query: 124    ttcctcaaggactgaatttcgtcattggagatatcatgaaacccaaaggcattttctcgg 183
              | || |||||  |||| || || || |||||| | |||||||| |||||  || ||||  
Sbjct: 122519 taccccaagggttgaactttgtaatcggagatgtgatgaaacctaaaggagttctctctt 122578

                                                                          
Query: 184    tcgcgccggatgttttcaatacggaagtccatgtcaaccggttctacatggagtactatg 243
              | | ||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 122579 ttgtgcctgatgtttttaatactgaagtccatgtcaatcggttctacatggagtactatg 122638

                           
Query: 244    acagtggagaggt 256
              | |||||||||||
Sbjct: 122639 atagtggagaggt 122651
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  216 bits (109), Expect = 5e-53
 Identities = 210/244 (86%)
 Strand = Plus / Minus

                                                                            
Query: 253      aggtttcgcaattttatagcgacctttcacttttcgaccttgatggcaaagaagttatga 312
                ||||||| ||||| |||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct: 31557942 aggtttcacaattctatagcgatctttcacttttcgaccttgatggcaaagaggtcatga 31557883

                                                                            
Query: 313      gacggacgatcaaagtgaatgatcccttgaggtatggtgggatcacgatataccaaacgg 372
                |   ||| ||||||||||| || |||||||||||||||||| |||| || |||||||| |
Sbjct: 31557882 ggaagactatcaaagtgaacgaccccttgaggtatggtggggtcacaatctaccaaaccg 31557823

                                                                            
Query: 373      actgggggttttcagcattacaggtgaagaaaaatggtgaaggacctttcaacttggcca 432
                | ||||| ||||||||||| || || ||||||||||||||||| |||||||| |||||||
Sbjct: 31557822 attggggattttcagcattgcaagtaaagaaaaatggtgaaggtcctttcaatttggcca 31557763

                                                                            
Query: 433      tggcacccttgcaactgaatggcaataaaaagctatacngaacattcttgccacttgaag 492
                |||| |||||| || |||||||  |||| ||| |||   ||||||| |||||||||||| 
Sbjct: 31557762 tggcccccttgaaattgaatggtgataagaagttatttggaacattgttgccacttgaaa 31557703

                    
Query: 493      actc 496
                ||||
Sbjct: 31557702 actc 31557699



 Score =  145 bits (73), Expect = 2e-31
 Identities = 208/253 (82%)
 Strand = Plus / Minus

                                                                            
Query: 4        tgtatgccttcaagggcctggctggtcggtacgcgcccatcggcgtgcacgtggcgatga 63
                ||||||| ||||| || |||||||||||||  ||||| ||||| |||||| | || ||||
Sbjct: 31558268 tgtatgctttcaaaggactggctggtcggtttgcgcctatcggtgtgcacatagctatga 31558209

                                                                            
Query: 64       tttttgtcatggcaggtgccacactttctgcgaccggaagctttaagggctcagtggatg 123
                ||||  |||||||||||||||| |||   || || || |||||||| || || |||||||
Sbjct: 31558208 ttttcatcatggcaggtgccacgcttagcgcaacagggagctttaaaggatcggtggatg 31558149

                                                                            
Query: 124      ttcctcaaggactgaatttcgtcattggagatatcatgaaacccaaaggcattttctcgg 183
                | || |||||  |||| || || || |||||| | |||||||| |||||  || ||||  
Sbjct: 31558148 taccccaagggttgaactttgtaatcggagatgtgatgaaacctaaaggagttctctctt 31558089

                                                                            
Query: 184      tcgcgccggatgttttcaatacggaagtccatgtcaaccggttctacatggagtactatg 243
                | | ||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 31558088 ttgtgcctgatgtttttaatactgaagtccatgtcaatcggttctacatggagtactatg 31558029

                             
Query: 244      acagtggagaggt 256
                | |||||||||||
Sbjct: 31558028 atagtggagaggt 31558016



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 309      atgagacggacgatcaaagt 328
                ||||||||||||||||||||
Sbjct: 32831755 atgagacggacgatcaaagt 32831774
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>gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete
             sequence
          Length = 133449

 Score =  216 bits (109), Expect = 5e-53
 Identities = 210/244 (86%)
 Strand = Plus / Plus

                                                                         
Query: 253   aggtttcgcaattttatagcgacctttcacttttcgaccttgatggcaaagaagttatga 312
             ||||||| ||||| |||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct: 34664 aggtttcacaattctatagcgatctttcacttttcgaccttgatggcaaagaggtcatga 34723

                                                                         
Query: 313   gacggacgatcaaagtgaatgatcccttgaggtatggtgggatcacgatataccaaacgg 372
             |   ||| ||||||||||| || |||||||||||||||||| |||| || |||||||| |
Sbjct: 34724 ggaagactatcaaagtgaacgaccccttgaggtatggtggggtcacaatctaccaaaccg 34783

                                                                         
Query: 373   actgggggttttcagcattacaggtgaagaaaaatggtgaaggacctttcaacttggcca 432
             | ||||| ||||||||||| || || ||||||||||||||||| |||||||| |||||||
Sbjct: 34784 attggggattttcagcattgcaagtaaagaaaaatggtgaaggtcctttcaatttggcca 34843

                                                                         
Query: 433   tggcacccttgcaactgaatggcaataaaaagctatacngaacattcttgccacttgaag 492
             |||| |||||| || |||||||  |||| ||| |||   ||||||| |||||||||||| 
Sbjct: 34844 tggcccccttgaaattgaatggtgataagaagttatttggaacattgttgccacttgaaa 34903

                 
Query: 493   actc 496
             ||||
Sbjct: 34904 actc 34907



 Score =  145 bits (73), Expect = 2e-31
 Identities = 208/253 (82%)
 Strand = Plus / Plus

                                                                         
Query: 4     tgtatgccttcaagggcctggctggtcggtacgcgcccatcggcgtgcacgtggcgatga 63
             ||||||| ||||| || |||||||||||||  ||||| ||||| |||||| | || ||||
Sbjct: 34338 tgtatgctttcaaaggactggctggtcggtttgcgcctatcggtgtgcacatagctatga 34397

                                                                         
Query: 64    tttttgtcatggcaggtgccacactttctgcgaccggaagctttaagggctcagtggatg 123
             ||||  |||||||||||||||| |||   || || || |||||||| || || |||||||
Sbjct: 34398 ttttcatcatggcaggtgccacgcttagcgcaacagggagctttaaaggatcggtggatg 34457

                                                                         
Query: 124   ttcctcaaggactgaatttcgtcattggagatatcatgaaacccaaaggcattttctcgg 183
             | || |||||  |||| || || || |||||| | |||||||| |||||  || ||||  
Sbjct: 34458 taccccaagggttgaactttgtaatcggagatgtgatgaaacctaaaggagttctctctt 34517

                                                                         
Query: 184   tcgcgccggatgttttcaatacggaagtccatgtcaaccggttctacatggagtactatg 243
             | | ||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 34518 ttgtgcctgatgtttttaatactgaagtccatgtcaatcggttctacatggagtactatg 34577

                          
Query: 244   acagtggagaggt 256
             | |||||||||||
Sbjct: 34578 atagtggagaggt 34590
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  216 bits (109), Expect = 5e-53
 Identities = 210/244 (86%)
 Strand = Plus / Minus

                                                                            
Query: 253      aggtttcgcaattttatagcgacctttcacttttcgaccttgatggcaaagaagttatga 312
                ||||||| ||||| |||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct: 31648448 aggtttcacaattctatagcgatctttcacttttcgaccttgatggcaaagaggtcatga 31648389

                                                                            
Query: 313      gacggacgatcaaagtgaatgatcccttgaggtatggtgggatcacgatataccaaacgg 372
                |   ||| ||||||||||| || |||||||||||||||||| |||| || |||||||| |
Sbjct: 31648388 ggaagactatcaaagtgaacgaccccttgaggtatggtggggtcacaatctaccaaaccg 31648329

                                                                            
Query: 373      actgggggttttcagcattacaggtgaagaaaaatggtgaaggacctttcaacttggcca 432
                | ||||| ||||||||||| || || ||||||||||||||||| |||||||| |||||||
Sbjct: 31648328 attggggattttcagcattgcaagtaaagaaaaatggtgaaggtcctttcaatttggcca 31648269

                                                                            
Query: 433      tggcacccttgcaactgaatggcaataaaaagctatacngaacattcttgccacttgaag 492
                |||| |||||| || |||||||  |||| ||| |||   ||||||| |||||||||||| 
Sbjct: 31648268 tggcccccttgaaattgaatggtgataagaagttatttggaacattgttgccacttgaaa 31648209

                    
Query: 493      actc 496
                ||||
Sbjct: 31648208 actc 31648205



 Score =  145 bits (73), Expect = 2e-31
 Identities = 208/253 (82%)
 Strand = Plus / Minus

                                                                            
Query: 4        tgtatgccttcaagggcctggctggtcggtacgcgcccatcggcgtgcacgtggcgatga 63
                ||||||| ||||| || |||||||||||||  ||||| ||||| |||||| | || ||||
Sbjct: 31648774 tgtatgctttcaaaggactggctggtcggtttgcgcctatcggtgtgcacatagctatga 31648715

                                                                            
Query: 64       tttttgtcatggcaggtgccacactttctgcgaccggaagctttaagggctcagtggatg 123
                ||||  |||||||||||||||| |||   || || || |||||||| || || |||||||
Sbjct: 31648714 ttttcatcatggcaggtgccacgcttagcgcaacagggagctttaaaggatcggtggatg 31648655

                                                                            
Query: 124      ttcctcaaggactgaatttcgtcattggagatatcatgaaacccaaaggcattttctcgg 183
                | || |||||  |||| || || || |||||| | |||||||| |||||  || ||||  
Sbjct: 31648654 taccccaagggttgaactttgtaatcggagatgtgatgaaacctaaaggagttctctctt 31648595

                                                                            
Query: 184      tcgcgccggatgttttcaatacggaagtccatgtcaaccggttctacatggagtactatg 243
                | | ||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 31648594 ttgtgcctgatgtttttaatactgaagtccatgtcaatcggttctacatggagtactatg 31648535

                             
Query: 244      acagtggagaggt 256
                | |||||||||||
Sbjct: 31648534 atagtggagaggt 31648522



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 309      atgagacggacgatcaaagt 328
                ||||||||||||||||||||
Sbjct: 32922265 atgagacggacgatcaaagt 32922284
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>ref|NM_103828.2| Arabidopsis thaliana unknown protein AT1G49380 mRNA, complete cds
          Length = 2055

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 92/110 (83%)
 Strand = Plus / Plus

                                                                        
Query: 330  aatgatcccttgaggtatggtgggatcacgatataccaaacggactgggggttttcagca 389
            |||||||||||||| ||||||||| ||||  ||||||| || || ||| | || ||||| 
Sbjct: 1150 aatgatcccttgagatatggtggggtcaccgtataccagacagattggagtttctcagcc 1209

                                                              
Query: 390  ttacaggtgaagaaaaatggtgaaggacctttcaacttggccatggcacc 439
            || |||||||  ||  ||||||||||||| ||||||||||| ||||||||
Sbjct: 1210 ttgcaggtgacaaaggatggtgaaggaccattcaacttggctatggcacc 1259



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 123 gttcctcaaggactgaatttcgtcattggagat 155
           |||||||||||||| ||||| ||||| ||||||
Sbjct: 943 gttcctcaaggactaaattttgtcatgggagat 975
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>gb|AC007504.3| Arabidopsis thaliana chromosome I BAC F13F21 genomic sequence, complete
             sequence
          Length = 125021

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 92/110 (83%)
 Strand = Plus / Minus

                                                                         
Query: 330   aatgatcccttgaggtatggtgggatcacgatataccaaacggactgggggttttcagca 389
             |||||||||||||| ||||||||| ||||  ||||||| || || ||| | || ||||| 
Sbjct: 65688 aatgatcccttgagatatggtggggtcaccgtataccagacagattggagtttctcagcc 65629

                                                               
Query: 390   ttacaggtgaagaaaaatggtgaaggacctttcaacttggccatggcacc 439
             || |||||||  ||  ||||||||||||| ||||||||||| ||||||||
Sbjct: 65628 ttgcaggtgacaaaggatggtgaaggaccattcaacttggctatggcacc 65579



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 123   gttcctcaaggactgaatttcgtcattggagat 155
             |||||||||||||| ||||| ||||| ||||||
Sbjct: 66003 gttcctcaaggactaaattttgtcatgggagat 65971
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>gb|AY086251.1| Arabidopsis thaliana clone 230 mRNA, complete sequence
          Length = 2015

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 92/110 (83%)
 Strand = Plus / Plus

                                                                        
Query: 330  aatgatcccttgaggtatggtgggatcacgatataccaaacggactgggggttttcagca 389
            |||||||||||||| ||||||||| ||||  ||||||| || || ||| | || ||||| 
Sbjct: 1144 aatgatcccttgagatatggtggggtcaccgtataccagacagattggagtttctcagcc 1203

                                                              
Query: 390  ttacaggtgaagaaaaatggtgaaggacctttcaacttggccatggcacc 439
            || |||||||  ||  ||||||||||||| ||||||||||| ||||||||
Sbjct: 1204 ttgcaggtgacaaaggatggtgaaggaccattcaacttggctatggcacc 1253



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 123 gttcctcaaggactgaatttcgtcattggagat 155
           |||||||||||||| ||||| ||||| ||||||
Sbjct: 937 gttcctcaaggactaaattttgtcatgggagat 969
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>dbj|AK117293.1| Arabidopsis thaliana At1g49380 mRNA for unknown protein, complete
            cds, clone: RAFL16-85-B03
          Length = 2055

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 92/110 (83%)
 Strand = Plus / Plus

                                                                        
Query: 330  aatgatcccttgaggtatggtgggatcacgatataccaaacggactgggggttttcagca 389
            |||||||||||||| ||||||||| ||||  ||||||| || || ||| | || ||||| 
Sbjct: 1150 aatgatcccttgagatatggtggggtcaccgtataccagacagattggagtttctcagcc 1209

                                                              
Query: 390  ttacaggtgaagaaaaatggtgaaggacctttcaacttggccatggcacc 439
            || |||||||  ||  ||||||||||||| ||||||||||| ||||||||
Sbjct: 1210 ttgcaggtgacaaaggatggtgaaggaccattcaacttggctatggcacc 1259



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 123 gttcctcaaggactgaatttcgtcattggagat 155
           |||||||||||||| ||||| ||||| ||||||
Sbjct: 943 gttcctcaaggactaaattttgtcatgggagat 975
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>gb|BT013135.1| Lycopersicon esculentum clone 114437F, mRNA sequence
          Length = 2091

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 121/152 (79%)
 Strand = Plus / Plus

                                                                        
Query: 216  gtcaaccggttctacatggagtactatgacagtggagaggtttcgcaattttatagcgac 275
            ||||| || |||| |||||| |||||||||||||| ||||| ||||| ||  |||  || 
Sbjct: 1056 gtcaatcgattctccatggactactatgacagtggggaggtctcgcagttccatactgat 1115

                                                                        
Query: 276  ctttcacttttcgaccttgatggcaaagaagttatgagacggacgatcaaagtgaatgat 335
            |||||||| || |||||| | || || ||||| |||||   ||| || |  || ||||||
Sbjct: 1116 ctttcactatttgaccttaaaggaaaggaagtaatgaggaagactataagtgtcaatgat 1175

                                            
Query: 336  cccttgaggtatggtgggatcacgatatacca 367
            ||||| |||||||| || ||||| ||||||||
Sbjct: 1176 cccttaaggtatgggggaatcactatatacca 1207
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>gb|AC130532.3| Mus musculus BAC clone RP23-189G24 from 7, complete sequence
          Length = 207333

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 378   gggttttcagcattacaggtga 399
             ||||||||||||||||||||||
Sbjct: 67174 gggttttcagcattacaggtga 67195
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>gb|DQ025508.1| Etheostoma wapiti isolate NwapB cytochrome b (cytb) gene, partial
           cds; mitochondrial
          Length = 1140

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 66  tttgtcatggcaggtgccacactt 89
           |||||||| |||||||||||||||
Sbjct: 559 tttgtcatcgcaggtgccacactt 582
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>gb|DQ025507.1| Etheostoma rubrum isolate NrubC cytochrome b (cytb) gene, partial
           cds; mitochondrial
          Length = 1140

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 66  tttgtcatggcaggtgccacactt 89
           |||||||| |||||||||||||||
Sbjct: 559 tttgtcattgcaggtgccacactt 582
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>gb|DQ025506.1| Etheostoma rubrum isolate NrubB cytochrome b (cytb) gene, partial
           cds; mitochondrial
          Length = 1140

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 66  tttgtcatggcaggtgccacactt 89
           |||||||| |||||||||||||||
Sbjct: 559 tttgtcattgcaggtgccacactt 582
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>gb|DQ025505.1| Etheostoma moorei isolate NmorA cytochrome b (cytb) gene, partial
           cds; mitochondrial
          Length = 1140

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 66  tttgtcatggcaggtgccacactt 89
           |||||||| |||||||||||||||
Sbjct: 559 tttgtcattgcaggtgccacactt 582
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>gb|DQ025501.1| Etheostoma chlorobranchium isolate NchbC cytochrome b (cytb) gene,
           partial cds; mitochondrial
          Length = 1140

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 66  tttgtcatggcaggtgccacactt 89
           |||||||| |||||||||||||||
Sbjct: 559 tttgtcattgcaggtgccacactt 582
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>gb|DQ025500.1| Etheostoma camurum isolate NcamC cytochrome b (cytb) gene, partial
           cds; mitochondrial
          Length = 1140

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 66  tttgtcatggcaggtgccacactt 89
           |||||||| |||||||||||||||
Sbjct: 559 tttgtcattgcaggtgccacactt 582
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>gb|DQ025499.1| Etheostoma camurum isolate NcamB cytochrome b (cytb) gene, partial
           cds; mitochondrial
          Length = 1140

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 66  tttgtcatggcaggtgccacactt 89
           |||||||| |||||||||||||||
Sbjct: 559 tttgtcattgcaggtgccacactt 582
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>gb|DQ025498.1| Etheostoma bellum isolate NblmB cytochrome b (cytb) gene, partial
           cds; mitochondrial
          Length = 1140

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 66  tttgtcatggcaggtgccacactt 89
           |||||||| |||||||||||||||
Sbjct: 559 tttgtcattgcaggtgccacactt 582
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>gb|AY742668.1| Etheostoma wapiti isolate NwapA cytochrome b (cytb) gene, partial
           cds; mitochondrial
          Length = 1140

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 66  tttgtcatggcaggtgccacactt 89
           |||||||| |||||||||||||||
Sbjct: 559 tttgtcatcgcaggtgccacactt 582
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>gb|AY742667.1| Etheostoma vulneratum isolate NvulB cytochrome b (cytb) gene,
           partial cds; mitochondrial
          Length = 1140

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 66  tttgtcatggcaggtgccacactt 89
           |||||||| |||||||||||||||
Sbjct: 559 tttgtcattgcaggtgccacactt 582
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>gb|AY742666.1| Etheostoma vulneratum isolate NvulA cytochrome b (cytb) gene,
           partial cds; mitochondrial
          Length = 1140

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 66  tttgtcatggcaggtgccacactt 89
           |||||||| |||||||||||||||
Sbjct: 559 tttgtcattgcaggtgccacactt 582
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>gb|AY742657.1| Etheostoma chlorobranchium isolate NchbA cytochrome b (cytb) gene,
           partial cds; mitochondrial
          Length = 1140

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 66  tttgtcatggcaggtgccacactt 89
           |||||||| |||||||||||||||
Sbjct: 559 tttgtcattgcaggtgccacactt 582
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>gb|AY742656.1| Etheostoma bellum isolate NblmA cytochrome b (cytb) gene, partial
           cds; mitochondrial
          Length = 1140

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 66  tttgtcatggcaggtgccacactt 89
           |||||||| |||||||||||||||
Sbjct: 559 tttgtcattgcaggtgccacactt 582
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>gb|AE010221.1| Pyrococcus furiosus DSM 3638, section 96 of 173 of the complete
            genome
          Length = 13565

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 161  gaaacccaaaggcattttct 180
            ||||||||||||||||||||
Sbjct: 3254 gaaacccaaaggcattttct 3273
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>ref|XM_414832.1| PREDICTED: Gallus gallus similar to RIKEN cDNA 2400010G15
            (LOC416528), mRNA
          Length = 3272

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 100  gaagctttaagggctcagtg 119
            ||||||||||||||||||||
Sbjct: 2812 gaagctttaagggctcagtg 2793
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>gb|AY374260.1| Etheostoma bellum cytochrome b (cytb) gene, partial cds;
           mitochondrial
          Length = 1101

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 66  tttgtcatggcaggtgccacactt 89
           |||||||| |||||||||||||||
Sbjct: 539 tttgtcattgcaggtgccacactt 562
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>gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genomic sequence, complete
             sequence
          Length = 141582

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 309   atgagacggacgatcaaagt 328
             ||||||||||||||||||||
Sbjct: 47786 atgagacggacgatcaaagt 47767
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 282     cttttcgaccttgatggcaa 301
               ||||||||||||||||||||
Sbjct: 3023172 cttttcgaccttgatggcaa 3023153
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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 282     cttttcgaccttgatggcaa 301
               ||||||||||||||||||||
Sbjct: 3011901 cttttcgaccttgatggcaa 3011882
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>ref|XM_543066.2| PREDICTED: Canis familiaris similar to RAE1 RNA export 1 homolog
           (LOC485942), mRNA
          Length = 1118

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 430 ccatggcacccttgcaactg 449
           ||||||||||||||||||||
Sbjct: 852 ccatggcacccttgcaactg 871
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>gb|AF386536.1| Etheostoma camurum isolate EcamA cytochrome b gene, partial cds;
           mitochondrial gene for mitochondrial product
          Length = 1140

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 66  tttgtcatggcaggtgccacactt 89
           |||||||| |||||||||||||||
Sbjct: 559 tttgtcattgcaggtgccacactt 582
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>gb|AF274446.1|AF274446 Etheostoma rubrum cytochrome b (cytb) gene, partial cds;
           mitochondrial gene for mitochondrial product
          Length = 1140

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 66  tttgtcatggcaggtgccacactt 89
           |||||||| |||||||||||||||
Sbjct: 559 tttgtcattgcaggtgccacactt 582
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>gb|AF274445.1|AF274445 Etheostoma moorei cytochrome b (cytb) gene, partial cds;
           mitochondrial gene for mitochondrial product
          Length = 1140

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 66  tttgtcatggcaggtgccacactt 89
           |||||||| |||||||||||||||
Sbjct: 559 tttgtcattgcaggtgccacactt 582
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 268     atagcgacctttcacttttc 287
               ||||||||||||||||||||
Sbjct: 5813614 atagcgacctttcacttttc 5813633
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>dbj|AP003052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0016I09
          Length = 148517

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 268   atagcgacctttcacttttc 287
             ||||||||||||||||||||
Sbjct: 17355 atagcgacctttcacttttc 17374
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>dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0451C06
          Length = 151773

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 268    atagcgacctttcacttttc 287
              ||||||||||||||||||||
Sbjct: 138316 atagcgacctttcacttttc 138335
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>gb|AE005115.1| Halobacterium sp. NRC-1 section 146 of 170 of the complete genome
          Length = 14635

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    cgcgcccatcggcgtgcacg 54
             ||||||||||||||||||||
Sbjct: 13615 cgcgcccatcggcgtgcacg 13634
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>emb|CT573071.1| Kuenenia stuttgartiensis genome fragment KUST_E (5 of 5)
          Length = 2199546

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 364    accaaacggactgggggttt 383
              ||||||||||||||||||||
Sbjct: 451398 accaaacggactgggggttt 451417
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>gb|AF045348.1|AF045348 Etheostoma camurum cytochrome b (cytb) gene, mitochondrial gene
           encoding mitochondrial protein, partial cds
          Length = 1140

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 66  tttgtcatggcaggtgccacactt 89
           |||||||| |||||||||||||||
Sbjct: 559 tttgtcattgcaggtgccacactt 582
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>emb|CT573021.3| Pig DNA sequence from clone XX-BE155F1 on chromosome 14, complete
             sequence
          Length = 118416

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 158   catgaaacccaaaggcattttctc 181
             |||||||||||||||| |||||||
Sbjct: 96687 catgaaacccaaaggctttttctc 96710


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,141,981
Number of Sequences: 3902068
Number of extensions: 4141981
Number of successful extensions: 70784
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70572
Number of HSP's gapped (non-prelim): 207
length of query: 502
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 480
effective length of database: 17,147,199,772
effective search space: 8230655890560
effective search space used: 8230655890560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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