ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags6j06 |
|---|---|
| Clone Library Name | barley_pub |
>EFG_LEPIN (Q8F983) Elongation factor G (EF-G)| Length = 706 Score = 32.0 bits (71), Expect = 0.76 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 10/105 (9%) Frame = +3 Query: 123 YKNGSNGIVIKLADGPEVPPLKEVVAKETEELLDRRQRFSVRELAMKFEKGLNTATLLSK 302 Y G +G+ I+ + P+ LKE+ K+ EELLD FS EL +G T ++ K Sbjct: 195 YFEGKDGMDIQEKEIPD--DLKELAQKKHEELLDAASMFS-DELTEALLEGTPTEEMIKK 251 Query: 303 EVKWRQVALLERDILL----------KNLKSVLESLRGQVTGKTK 407 ++ + L + + K L VL+ L V K K Sbjct: 252 AIRTGTIELKMTPVFMGSAFKNKGVQKLLDGVLDYLASPVDVKNK 296
>EFG_LEPIC (Q72VM5) Elongation factor G (EF-G)| Length = 706 Score = 32.0 bits (71), Expect = 0.76 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 10/105 (9%) Frame = +3 Query: 123 YKNGSNGIVIKLADGPEVPPLKEVVAKETEELLDRRQRFSVRELAMKFEKGLNTATLLSK 302 Y G +G+ I+ + P+ LKE+ K+ EELLD FS EL +G T ++ K Sbjct: 195 YFEGKDGMDIQEKEIPD--DLKELAQKKHEELLDAASMFS-DELTEALLEGTPTEEMIKK 251 Query: 303 EVKWRQVALLERDILL----------KNLKSVLESLRGQVTGKTK 407 ++ + L + + K L VL+ L V K K Sbjct: 252 AIRTGTIELKMTPVFMGSAFKNKGVQKLLDGVLDYLASPVDVKNK 296
>Y1356_METJA (Q58751) Hypothetical protein MJ1356| Length = 189 Score = 31.6 bits (70), Expect = 0.99 Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 7/89 (7%) Frame = +3 Query: 201 KETEELLDRRQRFSVRELAMKFEKGL----NTATL--LSKEVKWRQVALLERDILLKNLK 362 ++T+ L D +R + E + KGL N + L KE+ R + +E+D L + L Sbjct: 55 EKTKTLFDESKRKELEEDFKNWIKGLFEISNDSDLNEFYKEIVKRGIKYVEKDFLPEYLT 114 Query: 363 SVLESLRGQVTGKTKDEI-EESISMVEIL 446 +++ + ++ K K+E+ E++ +V+IL Sbjct: 115 AIIIKIEDRLKNKLKEELKEDAQEIVDIL 143
>RSC30_YEAST (P38781) Chromatin structure remodeling complex protein RSC30| (Remodel the structure of chromatin complex subunit 30) Length = 883 Score = 30.0 bits (66), Expect = 2.9 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 12/119 (10%) Frame = +3 Query: 105 RNKFPTYKNGSNGIVIKLADGPEVPPLKEVVAKETEELLDRRQRFSVRELAMKFEKGLN- 281 R T + +G I +D P+VP + ++ T L Q F + F G+N Sbjct: 132 RQNSSTVSSNVHGNTIVRSDSPDVPSMDQIREYNTRLQLVNAQSFDYTDNPYSFNVGINQ 191 Query: 282 --------TATLLSKEVKWRQVALLER---DILLKNLKSVLESLRGQVTGKTKDEIEES 425 T+ +EV +++ L+ D+ LKS+ E T ++I ++ Sbjct: 192 DSAVFDLMTSPFTQEEVLIKEIDFLKNKLLDLQSLQLKSLKEKSNLNADNTTANKINKT 250
>ERBB3_MOUSE (Q61526) Receptor tyrosine-protein kinase erbB-3 precursor (EC| 2.7.10.1) (c-erbB3) (Glial growth factor receptor) Length = 1339 Score = 29.6 bits (65), Expect = 3.8 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +3 Query: 144 IVIKLADGPEVPPLKEVVAKETEELLD 224 +VIK A GP +PP E A T+EL D Sbjct: 974 LVIKRASGPGIPPAAEPSALSTKELQD 1000
>ZADH1_MOUSE (Q8VDQ1) Zinc-binding alcohol dehydrogenase domain-containing| protein 1 (EC 1.-.-.-) Length = 351 Score = 29.6 bits (65), Expect = 3.8 Identities = 23/79 (29%), Positives = 37/79 (46%) Frame = +3 Query: 162 DGPEVPPLKEVVAKETEELLDRRQRFSVRELAMKFEKGLNTATLLSKEVKWRQVALLERD 341 D P PPL V +E R+RF+V KFE G+ + KE K L ++ Sbjct: 262 DVPYPPPLPPAVEAIRKERNITRERFTVLNYKDKFEPGILQLSQWFKEGK-----LKVKE 316 Query: 342 ILLKNLKSVLESLRGQVTG 398 + K L+++ + + +TG Sbjct: 317 TVAKGLENMGVAFQSMMTG 335
>K1219_HUMAN (Q86X10) Protein KIAA1219| Length = 1494 Score = 29.6 bits (65), Expect = 3.8 Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 19/102 (18%) Frame = +3 Query: 60 NEDIRPGPLRPANIIRNKFPTYKNGSNGI--------VIKLADGPEVPPL--KEVVAKET 209 N D+ PG L+ ++ FP + + N + KL G VPPL + V+ Sbjct: 1288 NMDLMPGILKQPSLTLELFPNHTDNLNSSQRLSPSSRMRKLPQGRPVPPLGPETRVSVVW 1347 Query: 210 EELLDRRQRFSVRELAMKFEKGLNT---------ATLLSKEV 308 E D + F + EL + G+ T +T L KEV Sbjct: 1348 VERYDDIENFPLSELMTEISTGVETTANSSTSLRSTTLEKEV 1389
>GLYA_MYCCT (Q2ST43) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 413 Score = 29.3 bits (64), Expect = 4.9 Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 13/136 (9%) Frame = +3 Query: 69 IRPGPLRPANIIRNKFPTYKNGSNGIVI-------KLADGPEVP-----PLKEVVAKETE 212 + P P+ A+I+ G+ G +I K D P PL+ ++A +T+ Sbjct: 207 VHPNPMEYADIVTTTTHKTLRGARGGLILCKQEFAKKVDSAVFPGSQGGPLENLIAGKTQ 266 Query: 213 ELLDRRQRFSVRELAMKFEKGLNTATLLSKEVKWRQVALLERDILLK-NLKSVLESLRGQ 389 LL+ +E + K + +E R VA + L+ ++KS L Q Sbjct: 267 ALLEASTD-EFKEYGKQIVKNTKALANVLQENGLRLVAGGSDNHLINVDIKSTL-----Q 320 Query: 390 VTGKTKDEIEESISMV 437 +TGK ++I ESI ++ Sbjct: 321 ITGKKAEKILESIGII 336
>RAD50_PYRHO (O58687) DNA double-strand break repair rad50 ATPase| Length = 879 Score = 29.3 bits (64), Expect = 4.9 Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 11/129 (8%) Frame = +3 Query: 30 RLLIMGAXTKNEDIRPGPLRPANIIRNKFPTYKNGSN---GIVIKLADG--------PEV 176 RLL +G T +E G +R NK+ KN I+ L D E+ Sbjct: 578 RLLRLGFKTIDE--LSGRIRELEKFHNKYIEAKNAEKELRDILESLKDEREELDKAFEEL 635 Query: 177 PPLKEVVAKETEELLDRRQRFSVRELAMKFEKGLNTATLLSKEVKWRQVALLERDILLKN 356 ++ + K T +L + +++F ++ K EK + LS E+K + L E + Sbjct: 636 AKIETDIEKVTSQLNELQRKFDQKKYEEKREKMMK----LSMEIKGLETKLEELERRRDE 691 Query: 357 LKSVLESLR 383 +KS +E L+ Sbjct: 692 IKSTIEKLK 700
>CAPS_CAEBR (Q60PC0) Calcium-dependent secretion activator (Uncoordinated| protein 31) Length = 1261 Score = 29.3 bits (64), Expect = 4.9 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%) Frame = +3 Query: 228 RQRFSVRELAMKFEKGLNTAT----LLSKEVKWRQVALLERDILLKNLKSVLESLRGQVT 395 R+ F+ RE A+K + T + E + + + L+ NL++V + RGQ Sbjct: 254 RREFATREEALKDPMKMKRLTPKFVVKDMETLYMDEVRMSINTLIGNLETVPVTTRGQTV 313 Query: 396 GKTKDE 413 GK KD+ Sbjct: 314 GKRKDK 319
>YGL4_YEAST (P53134) Putative oligopeptide transporter YGL114w| Length = 725 Score = 29.3 bits (64), Expect = 4.9 Identities = 19/52 (36%), Positives = 27/52 (51%) Frame = +3 Query: 81 PLRPANIIRNKFPTYKNGSNGIVIKLADGPEVPPLKEVVAKETEELLDRRQR 236 PLR I+R K P + +I + +G E+ L+EV ELL+ RQR Sbjct: 154 PLRKQVIVREKLPFPSGSATATLISVLNGTEI--LQEV---SKSELLEMRQR 200
>SRP54_MYCGE (P47294) Signal recognition particle protein (Fifty-four homolog)| Length = 446 Score = 29.3 bits (64), Expect = 4.9 Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 4/50 (8%) Frame = +3 Query: 267 EKGLNTATLLSKEV----KWRQVALLERDILLKNLKSVLESLRGQVTGKT 404 +K +N T+ K+V K ++ALL+ D+ L +K+ ++++R + G+T Sbjct: 15 QKKINAQTITEKDVELVLKEIRIALLDADVNLLVVKNFIKAIRDKTVGQT 64
>FLID_BORBU (O51173) Flagellar hook-associated protein 2 (HAP2) (Filament cap| protein) (Flagellar cap protein) Length = 665 Score = 29.3 bits (64), Expect = 4.9 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = +3 Query: 300 KEVKWRQVALLERDILLKNLKSVLESL 380 KE ++ + +L + LLKNLKS LES+ Sbjct: 487 KEEAYKNLGILRSEFLLKNLKSKLESI 513
>DOC2G_MOUSE (Q9ESN1) Double C2-like domain-containing protein gamma| (Doc2-gamma) Length = 387 Score = 29.3 bits (64), Expect = 4.9 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = +3 Query: 66 DIRPGPLRPANIIRNKFPTY 125 D+ PGP+RP +I N FP + Sbjct: 22 DVSPGPIRPIRLISNYFPHF 41
>MOCA_RHIME (P49307) Rhizopine catabolism protein mocA (EC 1.-.-.-)| Length = 317 Score = 29.3 bits (64), Expect = 4.9 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = -3 Query: 164 ICQLDHYAIRTILVGRKFIPYDICWTQ 84 +C L + + +GR+F P D CWTQ Sbjct: 214 LCDLSDGSSGLVSLGRRFPPGDACWTQ 240
>ZN513_HUMAN (Q8N8E2) Zinc finger protein 513| Length = 479 Score = 28.9 bits (63), Expect = 6.4 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = +2 Query: 338 RHSPEKSKECTGITERSSHWQN*GRN*GVYFYGG 439 RH+ EK C + HW N R+ VY +GG Sbjct: 403 RHTGEKPFRCATCAYTTGHWDNYKRHQKVYGHGG 436
>DOC2B_RAT (P70610) Double C2-like domain-containing protein beta (Doc2-beta)| Length = 412 Score = 28.9 bits (63), Expect = 6.4 Identities = 14/45 (31%), Positives = 19/45 (42%) Frame = +3 Query: 66 DIRPGPLRPANIIRNKFPTYKNGSNGIVIKLADGPEVPPLKEVVA 200 D+ PGP+RP I + FP + G A P P + A Sbjct: 21 DVCPGPIRPIKQISDYFPRFPRGLPPTAAPRASAPPDAPARSPAA 65
>GSTA4_MOUSE (P24472) Glutathione S-transferase 5.7 (EC 2.5.1.18) (GST 5.7) (GST| class-alpha) (GST A4-4) (GSTA4-4) Length = 222 Score = 28.5 bits (62), Expect = 8.4 Identities = 18/87 (20%), Positives = 42/87 (48%) Frame = +3 Query: 105 RNKFPTYKNGSNGIVIKLADGPEVPPLKEVVAKETEELLDRRQRFSVRELAMKFEKGLNT 284 R + Y +G+ +++ +A P P ++ +E+ +L+ R + + K K Sbjct: 89 RVRIDMYADGTQDLMMMIAVAPFKTPKEK---EESYDLILSRAKTRYFPVFEKILKDHGE 145 Query: 285 ATLLSKEVKWRQVALLERDILLKNLKS 365 A L+ ++ W + LLE ++++ L + Sbjct: 146 AFLVGNQLSWADIQLLEAILMVEELSA 172
>KINL_LEICH (P46865) Kinesin-like protein K39 (Fragment)| Length = 955 Score = 28.5 bits (62), Expect = 8.4 Identities = 23/86 (26%), Positives = 44/86 (51%) Frame = +3 Query: 183 LKEVVAKETEELLDRRQRFSVRELAMKFEKGLNTATLLSKEVKWRQVALLERDILLKNLK 362 LKE+ K+ L + +R E+A + EK +T L +E + R+VAL + L+ Sbjct: 517 LKEMAKKDAA--LSKVRRRKDAEIASEREKLESTVAQLEREQREREVALDALQTHQRKLQ 574 Query: 363 SVLESLRGQVTGKTKDEIEESISMVE 440 LES + T +D++ + ++ ++ Sbjct: 575 EALES--SERTAAERDQLLQQLTELQ 598
>RNZ2_PANTR (Q9GL72) Zinc phosphodiesterase ELAC protein 2 (EC 3.1.26.11)| (Ribonuclease Z 2) (RNase Z 2) (tRNase Z 2) (tRNA 3 endonuclease 2) (ElaC homolog protein 2) Length = 826 Score = 28.5 bits (62), Expect = 8.4 Identities = 15/45 (33%), Positives = 27/45 (60%) Frame = +3 Query: 174 VPPLKEVVAKETEELLDRRQRFSVRELAMKFEKGLNTATLLSKEV 308 +PPLK + A + EE+ +RR++ +R++ A LLS+E+ Sbjct: 764 IPPLKALFAGDIEEMEERREKRELRQV---------RAALLSREL 799
>RNZ2_HUMAN (Q9BQ52) Zinc phosphodiesterase ELAC protein 2 (EC 3.1.26.11)| (Ribonuclease Z 2) (RNase Z 2) (tRNase Z 2) (tRNA 3 endonuclease 2) (ElaC homolog protein 2) (Heredity prostate cancer protein 2) Length = 826 Score = 28.5 bits (62), Expect = 8.4 Identities = 15/45 (33%), Positives = 27/45 (60%) Frame = +3 Query: 174 VPPLKEVVAKETEELLDRRQRFSVRELAMKFEKGLNTATLLSKEV 308 +PPLK + A + EE+ +RR++ +R++ A LLS+E+ Sbjct: 764 IPPLKALFAGDIEEMEERREKRELRQV---------RAALLSREL 799
>DOC2B_MOUSE (P70169) Double C2-like domain-containing protein beta (Doc2-beta)| Length = 412 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/45 (31%), Positives = 19/45 (42%) Frame = +3 Query: 66 DIRPGPLRPANIIRNKFPTYKNGSNGIVIKLADGPEVPPLKEVVA 200 D+ PGP+RP I + FP + G A P P + A Sbjct: 21 DVCPGPIRPIKQISDYFPRFPRGLPPTAAPRAPAPPDAPARSPAA 65
>UACA_HUMAN (Q9BZF9) Uveal autoantigen with coiled-coil domains and ankyrin| repeats protein Length = 1416 Score = 28.5 bits (62), Expect = 8.4 Identities = 17/71 (23%), Positives = 35/71 (49%) Frame = +3 Query: 186 KEVVAKETEELLDRRQRFSVRELAMKFEKGLNTATLLSKEVKWRQVALLERDILLKNLKS 365 KE+ AK+ +ELL +++ + +K L T T L + ++ + +D + L + Sbjct: 1267 KEISAKDEKELLHFSIEQEIKDQKERCDKSLTTITELQRRIQESAKQIEAKDNKITELLN 1326 Query: 366 VLESLRGQVTG 398 +E L+ + G Sbjct: 1327 DVERLKQALNG 1337
>ATPAM_PEA (P05493) ATP synthase alpha chain, mitochondrial (EC 3.6.3.14)| Length = 507 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/32 (43%), Positives = 22/32 (68%) Frame = +3 Query: 318 QVALLERDILLKNLKSVLESLRGQVTGKTKDE 413 ++A ERDIL + +L+SL+G +TG+ K E Sbjct: 463 KIAQYERDILSTIKQELLQSLKGGLTGERKIE 494 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,790,186 Number of Sequences: 219361 Number of extensions: 1101900 Number of successful extensions: 3398 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3345 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3397 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
