ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6j06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_479311.1| Oryza sativa (japonica cultivar-group), mRNA 222 8e-55
2dbj|AK073689.1| Oryza sativa (japonica cultivar-group) cDNA clon... 222 8e-55
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 157 4e-35
4gb|AC137597.2| Genomic sequence for Oryza sativa, Nipponbare str... 157 4e-35
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 157 4e-35
6dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 113 5e-22
7dbj|AP003765.5| Oryza sativa (japonica cultivar-group) genomic D... 113 5e-22
8dbj|AP004671.2| Oryza sativa (japonica cultivar-group) genomic D... 113 5e-22
9emb|AL157718.10| Human DNA sequence from clone RP11-23O13 on chr... 44 0.39
10gb|M83677.1|RATRAB10X Sprague-Dawley (clone LRB3) RAB10 mRNA, co... 44 0.39
11gb|AC161180.3| Mus musculus chromosome 1, clone RP23-149C6, comp... 42 1.6
12gb|AC011359.5|AC011359 Homo sapiens chromosome 5 clone CTC-370H2... 42 1.6
13gb|AC123676.9| Mus musculus chromosome 1, clone RP23-275F9, comp... 42 1.6
14ref|NM_124062.1| Arabidopsis thaliana transcription factor AT5G4... 40 6.2
15ref|NM_187961.1| Oryza sativa (japonica cultivar-group), Ozsa838... 40 6.2
16ref|NM_194720.1| Oryza sativa (japonica cultivar-group) putative... 40 6.2
17gb|AC110230.12| Mus musculus chromosome 6, clone RP23-54L18, com... 40 6.2
18gb|AC112686.10| Mus musculus chromosome 6, clone RP23-354N21, co... 40 6.2
19ref|XM_948699.1| Theileria annulata strain Ankara hypothetical p... 40 6.2
20emb|AL591901.12| Human DNA sequence from clone RP11-400C4 on chr... 40 6.2
21gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
22gb|AC021657.19| Homo sapiens 3 BAC RP11-490B19 (Roswell Park Can... 40 6.2
23gb|AC122147.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
24gb|AC092553.4| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
25dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
26dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
27dbj|BA000020.2| Nostoc sp. PCC 7120 plasmid pCC7120alpha DNA, co... 40 6.2
28dbj|AP001366.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
29dbj|AB013394.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 6.2
30dbj|AK069171.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
31emb|AL935145.12| Zebrafish DNA sequence from clone CH211-173B9 i... 40 6.2
32gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
33emb|AL772204.13| Mouse DNA sequence from clone RP23-375M22 on ch... 40 6.2

>ref|XM_479311.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2058

 Score =  222 bits (112), Expect = 8e-55
 Identities = 301/364 (82%)
 Strand = Plus / Plus

                                                                       
Query: 76  cagggccactgcgtccagcaaatatcataaggaataaatttcctacctacaagaatggtt 135
           |||||||| ||||||| |||||  |||| || |||||||| ||||| ||||||||  |||
Sbjct: 301 cagggccattgcgtcctgcaaacttcatcagaaataaattccctacatacaagaagagtt 360

                                                                       
Query: 136 cgaatggcatagtgatcaagctggcagatggcccagaagtgccgcctctcaaggaggttg 195
            |||||| ||||| |||||  || ||||||  | |||| ||||  |||| || |||| ||
Sbjct: 361 tgaatgggatagttatcaaattgacagatgatcaagaaatgccatctctgaaagaggctg 420

                                                                       
Query: 196 ttgctaaggagaccgaggaactgcttgatcgccgtcagcgcttctcagtccgtgagcttg 255
           |||| ||||| || |  || || ||| ||||  |||||||| | ||||||||||||||||
Sbjct: 421 ttgccaaggaaacagcagacctacttcatcggagtcagcgcctttcagtccgtgagcttg 480

                                                                       
Query: 256 caatgaagtttgagaagggactcaacactgccactctgttgtctaaagaggttaaatgga 315
           | ||||| ||||||||||| || |||||||||||  |||||||||| |||||||||||||
Sbjct: 481 ctatgaaatttgagaagggtcttaacactgccacattgttgtctaatgaggttaaatgga 540

                                                                       
Query: 316 gacaagtggctttgttggagcgagacattctcctgaaaaatctaaagagtgtactggaat 375
           ||||||  ||||| |||||||||||||| || ||||||||||||||||||||| | ||||
Sbjct: 541 gacaagctgctttattggagcgagacatccttctgaaaaatctaaagagtgtattagaat 600

                                                                       
Query: 376 cactgagaggtcaagtcactggcaaaactaaggacgaaattgaggagtctatttctatgg 435
           | |||||| ||| |||  | || |||  |||||| ||||||||||||||  |||||||||
Sbjct: 601 cgctgagaagtcgagttgcagggaaacataaggatgaaattgaggagtccctttctatgg 660

               
Query: 436 tgga 439
           ||||
Sbjct: 661 tgga 664



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>dbj|AK073689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033059M22, full
           insert sequence
          Length = 2059

 Score =  222 bits (112), Expect = 8e-55
 Identities = 301/364 (82%)
 Strand = Plus / Plus

                                                                       
Query: 76  cagggccactgcgtccagcaaatatcataaggaataaatttcctacctacaagaatggtt 135
           |||||||| ||||||| |||||  |||| || |||||||| ||||| ||||||||  |||
Sbjct: 301 cagggccattgcgtcctgcaaacttcatcagaaataaattccctacatacaagaagagtt 360

                                                                       
Query: 136 cgaatggcatagtgatcaagctggcagatggcccagaagtgccgcctctcaaggaggttg 195
            |||||| ||||| |||||  || ||||||  | |||| ||||  |||| || |||| ||
Sbjct: 361 tgaatgggatagttatcaaattgacagatgatcaagaaatgccatctctgaaagaggctg 420

                                                                       
Query: 196 ttgctaaggagaccgaggaactgcttgatcgccgtcagcgcttctcagtccgtgagcttg 255
           |||| ||||| || |  || || ||| ||||  |||||||| | ||||||||||||||||
Sbjct: 421 ttgccaaggaaacagcagacctacttcatcggagtcagcgcctttcagtccgtgagcttg 480

                                                                       
Query: 256 caatgaagtttgagaagggactcaacactgccactctgttgtctaaagaggttaaatgga 315
           | ||||| ||||||||||| || |||||||||||  |||||||||| |||||||||||||
Sbjct: 481 ctatgaaatttgagaagggtcttaacactgccacattgttgtctaatgaggttaaatgga 540

                                                                       
Query: 316 gacaagtggctttgttggagcgagacattctcctgaaaaatctaaagagtgtactggaat 375
           ||||||  ||||| |||||||||||||| || ||||||||||||||||||||| | ||||
Sbjct: 541 gacaagctgctttattggagcgagacatccttctgaaaaatctaaagagtgtattagaat 600

                                                                       
Query: 376 cactgagaggtcaagtcactggcaaaactaaggacgaaattgaggagtctatttctatgg 435
           | |||||| ||| |||  | || |||  |||||| ||||||||||||||  |||||||||
Sbjct: 601 cgctgagaagtcgagttgcagggaaacataaggatgaaattgaggagtccctttctatgg 660

               
Query: 436 tgga 439
           ||||
Sbjct: 661 tgga 664



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  157 bits (79), Expect = 4e-35
 Identities = 199/239 (83%)
 Strand = Plus / Minus

                                                                            
Query: 70       tacggccagggccactgcgtccagcaaatatcataaggaataaatttcctacctacaaga 129
                ||||||| |||||  | ||||| ||||| ||||| |||  |||||||||||||||||| |
Sbjct: 14056447 tacggcctgggccgttacgtcctgcaaacatcatcagggctaaatttcctacctacaaaa 14056388

                                                                            
Query: 130      atggttcgaatggcatagtgatcaagctggcagatggcccagaagtgccgcctctcaagg 189
                |||||| |||||| |||||  |||||||||| |||||||| ||| ||||  |||||||||
Sbjct: 14056387 atggtttgaatggtatagtagtcaagctggctgatggccctgaaatgccatctctcaagg 14056328

                                                                            
Query: 190      aggttgttgctaaggagaccgaggaactgcttgatcgccgtcagcgcttctcagtccgtg 249
                ||  |||  | ||||| || | |||  |||||||||  ||||||||  | ||||||||||
Sbjct: 14056327 agactgtcaccaaggaaactgcggatatgcttgatcatcgtcagcgtctgtcagtccgtg 14056268

                                                                           
Query: 250      agcttgcaatgaagtttgagaagggactcaacactgccactctgttgtctaaagaggtt 308
                ||||||||||||||||||||||||| ||||| ||||||||| || |||| || ||||||
Sbjct: 14056267 agcttgcaatgaagtttgagaagggtctcaatactgccactttgctgtccaatgaggtt 14056209



 Score =  113 bits (57), Expect = 5e-22
 Identities = 114/133 (85%)
 Strand = Plus / Minus

                                                                            
Query: 304      aggttaaatggagacaagtggctttgttggagcgagacattctcctgaaaaatctaaaga 363
                |||||||||||||||||||||||||||||||||| || || || ||||| ||||||||||
Sbjct: 14055922 aggttaaatggagacaagtggctttgttggagcgtgatatccttctgaagaatctaaaga 14055863

                                                                            
Query: 364      gtgtactggaatcactgagaggtcaagtcactggcaaaactaaggacgaaattgaggagt 423
                 |||| | || ||||||||||| |  || || |||||||||||||  ||| ||||||| |
Sbjct: 14055862 ctgtattagagtcactgagaggccgtgtgacaggcaaaactaaggctgaacttgaggact 14055803

                             
Query: 424      ctatttctatggt 436
                |||| ||||||||
Sbjct: 14055802 ctatatctatggt 14055790



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>gb|AC137597.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0022F22, from chromosome 3, complete sequence
          Length = 144268

 Score =  157 bits (79), Expect = 4e-35
 Identities = 199/239 (83%)
 Strand = Plus / Minus

                                                                         
Query: 70    tacggccagggccactgcgtccagcaaatatcataaggaataaatttcctacctacaaga 129
             ||||||| |||||  | ||||| ||||| ||||| |||  |||||||||||||||||| |
Sbjct: 66126 tacggcctgggccgttacgtcctgcaaacatcatcagggctaaatttcctacctacaaaa 66067

                                                                         
Query: 130   atggttcgaatggcatagtgatcaagctggcagatggcccagaagtgccgcctctcaagg 189
             |||||| |||||| |||||  |||||||||| |||||||| ||| ||||  |||||||||
Sbjct: 66066 atggtttgaatggtatagtagtcaagctggctgatggccctgaaatgccatctctcaagg 66007

                                                                         
Query: 190   aggttgttgctaaggagaccgaggaactgcttgatcgccgtcagcgcttctcagtccgtg 249
             ||  |||  | ||||| || | |||  |||||||||  ||||||||  | ||||||||||
Sbjct: 66006 agactgtcaccaaggaaactgcggatatgcttgatcatcgtcagcgtctgtcagtccgtg 65947

                                                                        
Query: 250   agcttgcaatgaagtttgagaagggactcaacactgccactctgttgtctaaagaggtt 308
             ||||||||||||||||||||||||| ||||| ||||||||| || |||| || ||||||
Sbjct: 65946 agcttgcaatgaagtttgagaagggtctcaatactgccactttgctgtccaatgaggtt 65888



 Score =  113 bits (57), Expect = 5e-22
 Identities = 114/133 (85%)
 Strand = Plus / Minus

                                                                         
Query: 304   aggttaaatggagacaagtggctttgttggagcgagacattctcctgaaaaatctaaaga 363
             |||||||||||||||||||||||||||||||||| || || || ||||| ||||||||||
Sbjct: 65601 aggttaaatggagacaagtggctttgttggagcgtgatatccttctgaagaatctaaaga 65542

                                                                         
Query: 364   gtgtactggaatcactgagaggtcaagtcactggcaaaactaaggacgaaattgaggagt 423
              |||| | || ||||||||||| |  || || |||||||||||||  ||| ||||||| |
Sbjct: 65541 ctgtattagagtcactgagaggccgtgtgacaggcaaaactaaggctgaacttgaggact 65482

                          
Query: 424   ctatttctatggt 436
             |||| ||||||||
Sbjct: 65481 ctatatctatggt 65469



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  157 bits (79), Expect = 4e-35
 Identities = 199/239 (83%)
 Strand = Plus / Minus

                                                                            
Query: 70       tacggccagggccactgcgtccagcaaatatcataaggaataaatttcctacctacaaga 129
                ||||||| |||||  | ||||| ||||| ||||| |||  |||||||||||||||||| |
Sbjct: 14051422 tacggcctgggccgttacgtcctgcaaacatcatcagggctaaatttcctacctacaaaa 14051363

                                                                            
Query: 130      atggttcgaatggcatagtgatcaagctggcagatggcccagaagtgccgcctctcaagg 189
                |||||| |||||| |||||  |||||||||| |||||||| ||| ||||  |||||||||
Sbjct: 14051362 atggtttgaatggtatagtagtcaagctggctgatggccctgaaatgccatctctcaagg 14051303

                                                                            
Query: 190      aggttgttgctaaggagaccgaggaactgcttgatcgccgtcagcgcttctcagtccgtg 249
                ||  |||  | ||||| || | |||  |||||||||  ||||||||  | ||||||||||
Sbjct: 14051302 agactgtcaccaaggaaactgcggatatgcttgatcatcgtcagcgtctgtcagtccgtg 14051243

                                                                           
Query: 250      agcttgcaatgaagtttgagaagggactcaacactgccactctgttgtctaaagaggtt 308
                ||||||||||||||||||||||||| ||||| ||||||||| || |||| || ||||||
Sbjct: 14051242 agcttgcaatgaagtttgagaagggtctcaatactgccactttgctgtccaatgaggtt 14051184



 Score =  113 bits (57), Expect = 5e-22
 Identities = 114/133 (85%)
 Strand = Plus / Minus

                                                                            
Query: 304      aggttaaatggagacaagtggctttgttggagcgagacattctcctgaaaaatctaaaga 363
                |||||||||||||||||||||||||||||||||| || || || ||||| ||||||||||
Sbjct: 14050897 aggttaaatggagacaagtggctttgttggagcgtgatatccttctgaagaatctaaaga 14050838

                                                                            
Query: 364      gtgtactggaatcactgagaggtcaagtcactggcaaaactaaggacgaaattgaggagt 423
                 |||| | || ||||||||||| |  || || |||||||||||||  ||| ||||||| |
Sbjct: 14050837 ctgtattagagtcactgagaggccgtgtgacaggcaaaactaaggctgaacttgaggact 14050778

                             
Query: 424      ctatttctatggt 436
                |||| ||||||||
Sbjct: 14050777 ctatatctatggt 14050765



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  113 bits (57), Expect = 5e-22
 Identities = 114/133 (85%)
 Strand = Plus / Plus

                                                                            
Query: 304      aggttaaatggagacaagtggctttgttggagcgagacattctcctgaaaaatctaaaga 363
                ||||||||||||||||||  ||||| |||||||||||||| || ||||||||||||||||
Sbjct: 26716616 aggttaaatggagacaagctgctttattggagcgagacatccttctgaaaaatctaaaga 26716675

                                                                            
Query: 364      gtgtactggaatcactgagaggtcaagtcactggcaaaactaaggacgaaattgaggagt 423
                ||||| | ||||| |||||| ||| |||  | || |||  |||||| |||||||||||||
Sbjct: 26716676 gtgtattagaatcgctgagaagtcgagttgcagggaaacataaggatgaaattgaggagt 26716735

                             
Query: 424      ctatttctatggt 436
                |  ||||||||||
Sbjct: 26716736 ccctttctatggt 26716748



 Score =  111 bits (56), Expect = 2e-21
 Identities = 188/232 (81%)
 Strand = Plus / Plus

                                                                            
Query: 76       cagggccactgcgtccagcaaatatcataaggaataaatttcctacctacaagaatggtt 135
                |||||||| ||||||| |||||  |||| || |||||||| ||||| ||||||||  |||
Sbjct: 26716255 cagggccattgcgtcctgcaaacttcatcagaaataaattccctacatacaagaagagtt 26716314

                                                                            
Query: 136      cgaatggcatagtgatcaagctggcagatggcccagaagtgccgcctctcaaggaggttg 195
                 |||||| ||||| |||||  || ||||||  | |||| ||||  |||| || |||| ||
Sbjct: 26716315 tgaatgggatagttatcaaattgacagatgatcaagaaatgccatctctgaaagaggctg 26716374

                                                                            
Query: 196      ttgctaaggagaccgaggaactgcttgatcgccgtcagcgcttctcagtccgtgagcttg 255
                |||| ||||| || |  || || ||| ||||  |||||||| | ||||||||||||||||
Sbjct: 26716375 ttgccaaggaaacagcagacctacttcatcggagtcagcgcctttcagtccgtgagcttg 26716434

                                                                    
Query: 256      caatgaagtttgagaagggactcaacactgccactctgttgtctaaagaggt 307
                | ||||| ||||||||||| || |||||||||||  |||||||||| |||||
Sbjct: 26716435 ctatgaaatttgagaagggtcttaacactgccacattgttgtctaatgaggt 26716486



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>dbj|AP003765.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1003_C06
          Length = 143168

 Score =  113 bits (57), Expect = 5e-22
 Identities = 114/133 (85%)
 Strand = Plus / Plus

                                                                         
Query: 304   aggttaaatggagacaagtggctttgttggagcgagacattctcctgaaaaatctaaaga 363
             ||||||||||||||||||  ||||| |||||||||||||| || ||||||||||||||||
Sbjct: 63473 aggttaaatggagacaagctgctttattggagcgagacatccttctgaaaaatctaaaga 63532

                                                                         
Query: 364   gtgtactggaatcactgagaggtcaagtcactggcaaaactaaggacgaaattgaggagt 423
             ||||| | ||||| |||||| ||| |||  | || |||  |||||| |||||||||||||
Sbjct: 63533 gtgtattagaatcgctgagaagtcgagttgcagggaaacataaggatgaaattgaggagt 63592

                          
Query: 424   ctatttctatggt 436
             |  ||||||||||
Sbjct: 63593 ccctttctatggt 63605



 Score =  111 bits (56), Expect = 2e-21
 Identities = 188/232 (81%)
 Strand = Plus / Plus

                                                                         
Query: 76    cagggccactgcgtccagcaaatatcataaggaataaatttcctacctacaagaatggtt 135
             |||||||| ||||||| |||||  |||| || |||||||| ||||| ||||||||  |||
Sbjct: 63112 cagggccattgcgtcctgcaaacttcatcagaaataaattccctacatacaagaagagtt 63171

                                                                         
Query: 136   cgaatggcatagtgatcaagctggcagatggcccagaagtgccgcctctcaaggaggttg 195
              |||||| ||||| |||||  || ||||||  | |||| ||||  |||| || |||| ||
Sbjct: 63172 tgaatgggatagttatcaaattgacagatgatcaagaaatgccatctctgaaagaggctg 63231

                                                                         
Query: 196   ttgctaaggagaccgaggaactgcttgatcgccgtcagcgcttctcagtccgtgagcttg 255
             |||| ||||| || |  || || ||| ||||  |||||||| | ||||||||||||||||
Sbjct: 63232 ttgccaaggaaacagcagacctacttcatcggagtcagcgcctttcagtccgtgagcttg 63291

                                                                 
Query: 256   caatgaagtttgagaagggactcaacactgccactctgttgtctaaagaggt 307
             | ||||| ||||||||||| || |||||||||||  |||||||||| |||||
Sbjct: 63292 ctatgaaatttgagaagggtcttaacactgccacattgttgtctaatgaggt 63343



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>dbj|AP004671.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0524G08
          Length = 146690

 Score =  113 bits (57), Expect = 5e-22
 Identities = 114/133 (85%)
 Strand = Plus / Plus

                                                                          
Query: 304    aggttaaatggagacaagtggctttgttggagcgagacattctcctgaaaaatctaaaga 363
              ||||||||||||||||||  ||||| |||||||||||||| || ||||||||||||||||
Sbjct: 134220 aggttaaatggagacaagctgctttattggagcgagacatccttctgaaaaatctaaaga 134279

                                                                          
Query: 364    gtgtactggaatcactgagaggtcaagtcactggcaaaactaaggacgaaattgaggagt 423
              ||||| | ||||| |||||| ||| |||  | || |||  |||||| |||||||||||||
Sbjct: 134280 gtgtattagaatcgctgagaagtcgagttgcagggaaacataaggatgaaattgaggagt 134339

                           
Query: 424    ctatttctatggt 436
              |  ||||||||||
Sbjct: 134340 ccctttctatggt 134352



 Score =  111 bits (56), Expect = 2e-21
 Identities = 188/232 (81%)
 Strand = Plus / Plus

                                                                          
Query: 76     cagggccactgcgtccagcaaatatcataaggaataaatttcctacctacaagaatggtt 135
              |||||||| ||||||| |||||  |||| || |||||||| ||||| ||||||||  |||
Sbjct: 133859 cagggccattgcgtcctgcaaacttcatcagaaataaattccctacatacaagaagagtt 133918

                                                                          
Query: 136    cgaatggcatagtgatcaagctggcagatggcccagaagtgccgcctctcaaggaggttg 195
               |||||| ||||| |||||  || ||||||  | |||| ||||  |||| || |||| ||
Sbjct: 133919 tgaatgggatagttatcaaattgacagatgatcaagaaatgccatctctgaaagaggctg 133978

                                                                          
Query: 196    ttgctaaggagaccgaggaactgcttgatcgccgtcagcgcttctcagtccgtgagcttg 255
              |||| ||||| || |  || || ||| ||||  |||||||| | ||||||||||||||||
Sbjct: 133979 ttgccaaggaaacagcagacctacttcatcggagtcagcgcctttcagtccgtgagcttg 134038

                                                                  
Query: 256    caatgaagtttgagaagggactcaacactgccactctgttgtctaaagaggt 307
              | ||||| ||||||||||| || |||||||||||  |||||||||| |||||
Sbjct: 134039 ctatgaaatttgagaagggtcttaacactgccacattgttgtctaatgaggt 134090



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>emb|AL157718.10| Human DNA sequence from clone RP11-23O13 on chromosome 20 Contains a
             novel gene, the 5' end of a novel gene and a CpG island,
             complete sequence
          Length = 84216

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 78    gggccactgcgtccagcaaata 99
             ||||||||||||||||||||||
Sbjct: 12385 gggccactgcgtccagcaaata 12364



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>gb|M83677.1|RATRAB10X Sprague-Dawley (clone LRB3) RAB10 mRNA, complete cds
          Length = 991

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 421 agtctatttctatggtggaaat 442
           ||||||||||||||||||||||
Sbjct: 336 agtctatttctatggtggaaat 315



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>gb|AC161180.3| Mus musculus chromosome 1, clone RP23-149C6, complete sequence
          Length = 215599

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 427   tttctatggtggaaattcttg 447
             |||||||||||||||||||||
Sbjct: 63330 tttctatggtggaaattcttg 63310



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>gb|AC011359.5|AC011359 Homo sapiens chromosome 5 clone CTC-370H24, complete sequence
          Length = 195887

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 100   tcataaggaataaatttccta 120
             |||||||||||||||||||||
Sbjct: 62703 tcataaggaataaatttccta 62723



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>gb|AC123676.9| Mus musculus chromosome 1, clone RP23-275F9, complete sequence
          Length = 169201

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 427   tttctatggtggaaattcttg 447
             |||||||||||||||||||||
Sbjct: 10617 tttctatggtggaaattcttg 10637



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>ref|NM_124062.1| Arabidopsis thaliana transcription factor AT5G46910 mRNA, complete
            cds
          Length = 2124

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 254  tgcaatgaagtttgagaagg 273
            ||||||||||||||||||||
Sbjct: 1413 tgcaatgaagtttgagaagg 1432



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>ref|NM_187961.1| Oryza sativa (japonica cultivar-group), Ozsa8381 predicted mRNA
          Length = 3993

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 212  ggaactgcttgatcgccgtc 231
            ||||||||||||||||||||
Sbjct: 1681 ggaactgcttgatcgccgtc 1662



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>ref|NM_194720.1| Oryza sativa (japonica cultivar-group) putative pol polyprotein
            (OSJNBb0072F04.17), mRNA
          Length = 4281

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 212  ggaactgcttgatcgccgtc 231
            ||||||||||||||||||||
Sbjct: 1882 ggaactgcttgatcgccgtc 1863



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>gb|AC110230.12| Mus musculus chromosome 6, clone RP23-54L18, complete sequence
          Length = 216521

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 302    agaggttaaatggagacaag 321
              ||||||||||||||||||||
Sbjct: 180218 agaggttaaatggagacaag 180237



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>gb|AC112686.10| Mus musculus chromosome 6, clone RP23-354N21, complete sequence
          Length = 222603

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 302    agaggttaaatggagacaag 321
              ||||||||||||||||||||
Sbjct: 216884 agaggttaaatggagacaag 216865



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>ref|XM_948699.1| Theileria annulata strain Ankara hypothetical protein (TA16465)
            partial mRNA
          Length = 2925

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1    aatttgtattttatagatga 20
            ||||||||||||||||||||
Sbjct: 1738 aatttgtattttatagatga 1757



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>emb|AL591901.12| Human DNA sequence from clone RP11-400C4 on chromosome 1, complete
             sequence
          Length = 129844

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 376   cactgagaggtcaagtcact 395
             ||||||||||||||||||||
Sbjct: 31721 cactgagaggtcaagtcact 31702



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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
               Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 212     ggaactgcttgatcgccgtc 231
               ||||||||||||||||||||
Sbjct: 1860944 ggaactgcttgatcgccgtc 1860925



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>gb|AC021657.19| Homo sapiens 3 BAC RP11-490B19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 170046

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 434   ggtggaaattcttgcagttc 453
             ||||||||||||||||||||
Sbjct: 98759 ggtggaaattcttgcagttc 98740



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>gb|AC122147.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAb0072F04, complete sequence
          Length = 137724

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   ggaactgcttgatcgccgtc 231
             ||||||||||||||||||||
Sbjct: 79397 ggaactgcttgatcgccgtc 79378



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>gb|AC092553.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0072F04,
              complete sequence
          Length = 133121

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 212    ggaactgcttgatcgccgtc 231
              ||||||||||||||||||||
Sbjct: 112518 ggaactgcttgatcgccgtc 112499



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 212     ggaactgcttgatcgccgtc 231
               ||||||||||||||||||||
Sbjct: 1860944 ggaactgcttgatcgccgtc 1860925



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 212     ggaactgcttgatcgccgtc 231
               ||||||||||||||||||||
Sbjct: 8824390 ggaactgcttgatcgccgtc 8824409



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>dbj|BA000020.2| Nostoc sp. PCC 7120 plasmid pCC7120alpha DNA, complete genome
          Length = 408101

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 96     aatatcataaggaataaatttcct 119
              ||||| ||||||||||||||||||
Sbjct: 163385 aatatgataaggaataaatttcct 163362



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>dbj|AP001366.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0469E09
          Length = 146081

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   ggaactgcttgatcgccgtc 231
             ||||||||||||||||||||
Sbjct: 60418 ggaactgcttgatcgccgtc 60437



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>dbj|AB013394.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQD22
          Length = 85661

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 254   tgcaatgaagtttgagaagg 273
             ||||||||||||||||||||
Sbjct: 18499 tgcaatgaagtttgagaagg 18518



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>dbj|AK069171.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023005P22, full
            insert sequence
          Length = 4721

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 212  ggaactgcttgatcgccgtc 231
            ||||||||||||||||||||
Sbjct: 2002 ggaactgcttgatcgccgtc 1983



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>emb|AL935145.12| Zebrafish DNA sequence from clone CH211-173B9 in linkage group 20,
              complete sequence
          Length = 157156

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 338    agacattctcctgaaaaatctaaa 361
              |||| |||||||||||||||||||
Sbjct: 132699 agactttctcctgaaaaatctaaa 132676



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 212     ggaactgcttgatcgccgtc 231
               ||||||||||||||||||||
Sbjct: 1860895 ggaactgcttgatcgccgtc 1860876



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>emb|AL772204.13| Mouse DNA sequence from clone RP23-375M22 on chromosome 4, complete
             sequence
          Length = 45419

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    tagatgacctgggctgcgac 33
             ||||||||||||||||||||
Sbjct: 30345 tagatgacctgggctgcgac 30364


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,949,129
Number of Sequences: 3902068
Number of extensions: 3949129
Number of successful extensions: 75999
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75808
Number of HSP's gapped (non-prelim): 183
length of query: 457
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 435
effective length of database: 17,147,199,772
effective search space: 7459031900820
effective search space used: 7459031900820
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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