| Clone Name | bags6j06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_479311.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2058 Score = 222 bits (112), Expect = 8e-55 Identities = 301/364 (82%) Strand = Plus / Plus Query: 76 cagggccactgcgtccagcaaatatcataaggaataaatttcctacctacaagaatggtt 135 |||||||| ||||||| ||||| |||| || |||||||| ||||| |||||||| ||| Sbjct: 301 cagggccattgcgtcctgcaaacttcatcagaaataaattccctacatacaagaagagtt 360 Query: 136 cgaatggcatagtgatcaagctggcagatggcccagaagtgccgcctctcaaggaggttg 195 |||||| ||||| ||||| || |||||| | |||| |||| |||| || |||| || Sbjct: 361 tgaatgggatagttatcaaattgacagatgatcaagaaatgccatctctgaaagaggctg 420 Query: 196 ttgctaaggagaccgaggaactgcttgatcgccgtcagcgcttctcagtccgtgagcttg 255 |||| ||||| || | || || ||| |||| |||||||| | |||||||||||||||| Sbjct: 421 ttgccaaggaaacagcagacctacttcatcggagtcagcgcctttcagtccgtgagcttg 480 Query: 256 caatgaagtttgagaagggactcaacactgccactctgttgtctaaagaggttaaatgga 315 | ||||| ||||||||||| || ||||||||||| |||||||||| ||||||||||||| Sbjct: 481 ctatgaaatttgagaagggtcttaacactgccacattgttgtctaatgaggttaaatgga 540 Query: 316 gacaagtggctttgttggagcgagacattctcctgaaaaatctaaagagtgtactggaat 375 |||||| ||||| |||||||||||||| || ||||||||||||||||||||| | |||| Sbjct: 541 gacaagctgctttattggagcgagacatccttctgaaaaatctaaagagtgtattagaat 600 Query: 376 cactgagaggtcaagtcactggcaaaactaaggacgaaattgaggagtctatttctatgg 435 | |||||| ||| ||| | || ||| |||||| |||||||||||||| ||||||||| Sbjct: 601 cgctgagaagtcgagttgcagggaaacataaggatgaaattgaggagtccctttctatgg 660 Query: 436 tgga 439 |||| Sbjct: 661 tgga 664
>dbj|AK073689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033059M22, full insert sequence Length = 2059 Score = 222 bits (112), Expect = 8e-55 Identities = 301/364 (82%) Strand = Plus / Plus Query: 76 cagggccactgcgtccagcaaatatcataaggaataaatttcctacctacaagaatggtt 135 |||||||| ||||||| ||||| |||| || |||||||| ||||| |||||||| ||| Sbjct: 301 cagggccattgcgtcctgcaaacttcatcagaaataaattccctacatacaagaagagtt 360 Query: 136 cgaatggcatagtgatcaagctggcagatggcccagaagtgccgcctctcaaggaggttg 195 |||||| ||||| ||||| || |||||| | |||| |||| |||| || |||| || Sbjct: 361 tgaatgggatagttatcaaattgacagatgatcaagaaatgccatctctgaaagaggctg 420 Query: 196 ttgctaaggagaccgaggaactgcttgatcgccgtcagcgcttctcagtccgtgagcttg 255 |||| ||||| || | || || ||| |||| |||||||| | |||||||||||||||| Sbjct: 421 ttgccaaggaaacagcagacctacttcatcggagtcagcgcctttcagtccgtgagcttg 480 Query: 256 caatgaagtttgagaagggactcaacactgccactctgttgtctaaagaggttaaatgga 315 | ||||| ||||||||||| || ||||||||||| |||||||||| ||||||||||||| Sbjct: 481 ctatgaaatttgagaagggtcttaacactgccacattgttgtctaatgaggttaaatgga 540 Query: 316 gacaagtggctttgttggagcgagacattctcctgaaaaatctaaagagtgtactggaat 375 |||||| ||||| |||||||||||||| || ||||||||||||||||||||| | |||| Sbjct: 541 gacaagctgctttattggagcgagacatccttctgaaaaatctaaagagtgtattagaat 600 Query: 376 cactgagaggtcaagtcactggcaaaactaaggacgaaattgaggagtctatttctatgg 435 | |||||| ||| ||| | || ||| |||||| |||||||||||||| ||||||||| Sbjct: 601 cgctgagaagtcgagttgcagggaaacataaggatgaaattgaggagtccctttctatgg 660 Query: 436 tgga 439 |||| Sbjct: 661 tgga 664
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 157 bits (79), Expect = 4e-35 Identities = 199/239 (83%) Strand = Plus / Minus Query: 70 tacggccagggccactgcgtccagcaaatatcataaggaataaatttcctacctacaaga 129 ||||||| ||||| | ||||| ||||| ||||| ||| |||||||||||||||||| | Sbjct: 14056447 tacggcctgggccgttacgtcctgcaaacatcatcagggctaaatttcctacctacaaaa 14056388 Query: 130 atggttcgaatggcatagtgatcaagctggcagatggcccagaagtgccgcctctcaagg 189 |||||| |||||| ||||| |||||||||| |||||||| ||| |||| ||||||||| Sbjct: 14056387 atggtttgaatggtatagtagtcaagctggctgatggccctgaaatgccatctctcaagg 14056328 Query: 190 aggttgttgctaaggagaccgaggaactgcttgatcgccgtcagcgcttctcagtccgtg 249 || ||| | ||||| || | ||| ||||||||| |||||||| | |||||||||| Sbjct: 14056327 agactgtcaccaaggaaactgcggatatgcttgatcatcgtcagcgtctgtcagtccgtg 14056268 Query: 250 agcttgcaatgaagtttgagaagggactcaacactgccactctgttgtctaaagaggtt 308 ||||||||||||||||||||||||| ||||| ||||||||| || |||| || |||||| Sbjct: 14056267 agcttgcaatgaagtttgagaagggtctcaatactgccactttgctgtccaatgaggtt 14056209 Score = 113 bits (57), Expect = 5e-22 Identities = 114/133 (85%) Strand = Plus / Minus Query: 304 aggttaaatggagacaagtggctttgttggagcgagacattctcctgaaaaatctaaaga 363 |||||||||||||||||||||||||||||||||| || || || ||||| |||||||||| Sbjct: 14055922 aggttaaatggagacaagtggctttgttggagcgtgatatccttctgaagaatctaaaga 14055863 Query: 364 gtgtactggaatcactgagaggtcaagtcactggcaaaactaaggacgaaattgaggagt 423 |||| | || ||||||||||| | || || ||||||||||||| ||| ||||||| | Sbjct: 14055862 ctgtattagagtcactgagaggccgtgtgacaggcaaaactaaggctgaacttgaggact 14055803 Query: 424 ctatttctatggt 436 |||| |||||||| Sbjct: 14055802 ctatatctatggt 14055790
>gb|AC137597.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0022F22, from chromosome 3, complete sequence Length = 144268 Score = 157 bits (79), Expect = 4e-35 Identities = 199/239 (83%) Strand = Plus / Minus Query: 70 tacggccagggccactgcgtccagcaaatatcataaggaataaatttcctacctacaaga 129 ||||||| ||||| | ||||| ||||| ||||| ||| |||||||||||||||||| | Sbjct: 66126 tacggcctgggccgttacgtcctgcaaacatcatcagggctaaatttcctacctacaaaa 66067 Query: 130 atggttcgaatggcatagtgatcaagctggcagatggcccagaagtgccgcctctcaagg 189 |||||| |||||| ||||| |||||||||| |||||||| ||| |||| ||||||||| Sbjct: 66066 atggtttgaatggtatagtagtcaagctggctgatggccctgaaatgccatctctcaagg 66007 Query: 190 aggttgttgctaaggagaccgaggaactgcttgatcgccgtcagcgcttctcagtccgtg 249 || ||| | ||||| || | ||| ||||||||| |||||||| | |||||||||| Sbjct: 66006 agactgtcaccaaggaaactgcggatatgcttgatcatcgtcagcgtctgtcagtccgtg 65947 Query: 250 agcttgcaatgaagtttgagaagggactcaacactgccactctgttgtctaaagaggtt 308 ||||||||||||||||||||||||| ||||| ||||||||| || |||| || |||||| Sbjct: 65946 agcttgcaatgaagtttgagaagggtctcaatactgccactttgctgtccaatgaggtt 65888 Score = 113 bits (57), Expect = 5e-22 Identities = 114/133 (85%) Strand = Plus / Minus Query: 304 aggttaaatggagacaagtggctttgttggagcgagacattctcctgaaaaatctaaaga 363 |||||||||||||||||||||||||||||||||| || || || ||||| |||||||||| Sbjct: 65601 aggttaaatggagacaagtggctttgttggagcgtgatatccttctgaagaatctaaaga 65542 Query: 364 gtgtactggaatcactgagaggtcaagtcactggcaaaactaaggacgaaattgaggagt 423 |||| | || ||||||||||| | || || ||||||||||||| ||| ||||||| | Sbjct: 65541 ctgtattagagtcactgagaggccgtgtgacaggcaaaactaaggctgaacttgaggact 65482 Query: 424 ctatttctatggt 436 |||| |||||||| Sbjct: 65481 ctatatctatggt 65469
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 157 bits (79), Expect = 4e-35 Identities = 199/239 (83%) Strand = Plus / Minus Query: 70 tacggccagggccactgcgtccagcaaatatcataaggaataaatttcctacctacaaga 129 ||||||| ||||| | ||||| ||||| ||||| ||| |||||||||||||||||| | Sbjct: 14051422 tacggcctgggccgttacgtcctgcaaacatcatcagggctaaatttcctacctacaaaa 14051363 Query: 130 atggttcgaatggcatagtgatcaagctggcagatggcccagaagtgccgcctctcaagg 189 |||||| |||||| ||||| |||||||||| |||||||| ||| |||| ||||||||| Sbjct: 14051362 atggtttgaatggtatagtagtcaagctggctgatggccctgaaatgccatctctcaagg 14051303 Query: 190 aggttgttgctaaggagaccgaggaactgcttgatcgccgtcagcgcttctcagtccgtg 249 || ||| | ||||| || | ||| ||||||||| |||||||| | |||||||||| Sbjct: 14051302 agactgtcaccaaggaaactgcggatatgcttgatcatcgtcagcgtctgtcagtccgtg 14051243 Query: 250 agcttgcaatgaagtttgagaagggactcaacactgccactctgttgtctaaagaggtt 308 ||||||||||||||||||||||||| ||||| ||||||||| || |||| || |||||| Sbjct: 14051242 agcttgcaatgaagtttgagaagggtctcaatactgccactttgctgtccaatgaggtt 14051184 Score = 113 bits (57), Expect = 5e-22 Identities = 114/133 (85%) Strand = Plus / Minus Query: 304 aggttaaatggagacaagtggctttgttggagcgagacattctcctgaaaaatctaaaga 363 |||||||||||||||||||||||||||||||||| || || || ||||| |||||||||| Sbjct: 14050897 aggttaaatggagacaagtggctttgttggagcgtgatatccttctgaagaatctaaaga 14050838 Query: 364 gtgtactggaatcactgagaggtcaagtcactggcaaaactaaggacgaaattgaggagt 423 |||| | || ||||||||||| | || || ||||||||||||| ||| ||||||| | Sbjct: 14050837 ctgtattagagtcactgagaggccgtgtgacaggcaaaactaaggctgaacttgaggact 14050778 Query: 424 ctatttctatggt 436 |||| |||||||| Sbjct: 14050777 ctatatctatggt 14050765
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 113 bits (57), Expect = 5e-22 Identities = 114/133 (85%) Strand = Plus / Plus Query: 304 aggttaaatggagacaagtggctttgttggagcgagacattctcctgaaaaatctaaaga 363 |||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||| Sbjct: 26716616 aggttaaatggagacaagctgctttattggagcgagacatccttctgaaaaatctaaaga 26716675 Query: 364 gtgtactggaatcactgagaggtcaagtcactggcaaaactaaggacgaaattgaggagt 423 ||||| | ||||| |||||| ||| ||| | || ||| |||||| ||||||||||||| Sbjct: 26716676 gtgtattagaatcgctgagaagtcgagttgcagggaaacataaggatgaaattgaggagt 26716735 Query: 424 ctatttctatggt 436 | |||||||||| Sbjct: 26716736 ccctttctatggt 26716748 Score = 111 bits (56), Expect = 2e-21 Identities = 188/232 (81%) Strand = Plus / Plus Query: 76 cagggccactgcgtccagcaaatatcataaggaataaatttcctacctacaagaatggtt 135 |||||||| ||||||| ||||| |||| || |||||||| ||||| |||||||| ||| Sbjct: 26716255 cagggccattgcgtcctgcaaacttcatcagaaataaattccctacatacaagaagagtt 26716314 Query: 136 cgaatggcatagtgatcaagctggcagatggcccagaagtgccgcctctcaaggaggttg 195 |||||| ||||| ||||| || |||||| | |||| |||| |||| || |||| || Sbjct: 26716315 tgaatgggatagttatcaaattgacagatgatcaagaaatgccatctctgaaagaggctg 26716374 Query: 196 ttgctaaggagaccgaggaactgcttgatcgccgtcagcgcttctcagtccgtgagcttg 255 |||| ||||| || | || || ||| |||| |||||||| | |||||||||||||||| Sbjct: 26716375 ttgccaaggaaacagcagacctacttcatcggagtcagcgcctttcagtccgtgagcttg 26716434 Query: 256 caatgaagtttgagaagggactcaacactgccactctgttgtctaaagaggt 307 | ||||| ||||||||||| || ||||||||||| |||||||||| ||||| Sbjct: 26716435 ctatgaaatttgagaagggtcttaacactgccacattgttgtctaatgaggt 26716486
>dbj|AP003765.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1003_C06 Length = 143168 Score = 113 bits (57), Expect = 5e-22 Identities = 114/133 (85%) Strand = Plus / Plus Query: 304 aggttaaatggagacaagtggctttgttggagcgagacattctcctgaaaaatctaaaga 363 |||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||| Sbjct: 63473 aggttaaatggagacaagctgctttattggagcgagacatccttctgaaaaatctaaaga 63532 Query: 364 gtgtactggaatcactgagaggtcaagtcactggcaaaactaaggacgaaattgaggagt 423 ||||| | ||||| |||||| ||| ||| | || ||| |||||| ||||||||||||| Sbjct: 63533 gtgtattagaatcgctgagaagtcgagttgcagggaaacataaggatgaaattgaggagt 63592 Query: 424 ctatttctatggt 436 | |||||||||| Sbjct: 63593 ccctttctatggt 63605 Score = 111 bits (56), Expect = 2e-21 Identities = 188/232 (81%) Strand = Plus / Plus Query: 76 cagggccactgcgtccagcaaatatcataaggaataaatttcctacctacaagaatggtt 135 |||||||| ||||||| ||||| |||| || |||||||| ||||| |||||||| ||| Sbjct: 63112 cagggccattgcgtcctgcaaacttcatcagaaataaattccctacatacaagaagagtt 63171 Query: 136 cgaatggcatagtgatcaagctggcagatggcccagaagtgccgcctctcaaggaggttg 195 |||||| ||||| ||||| || |||||| | |||| |||| |||| || |||| || Sbjct: 63172 tgaatgggatagttatcaaattgacagatgatcaagaaatgccatctctgaaagaggctg 63231 Query: 196 ttgctaaggagaccgaggaactgcttgatcgccgtcagcgcttctcagtccgtgagcttg 255 |||| ||||| || | || || ||| |||| |||||||| | |||||||||||||||| Sbjct: 63232 ttgccaaggaaacagcagacctacttcatcggagtcagcgcctttcagtccgtgagcttg 63291 Query: 256 caatgaagtttgagaagggactcaacactgccactctgttgtctaaagaggt 307 | ||||| ||||||||||| || ||||||||||| |||||||||| ||||| Sbjct: 63292 ctatgaaatttgagaagggtcttaacactgccacattgttgtctaatgaggt 63343
>dbj|AP004671.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0524G08 Length = 146690 Score = 113 bits (57), Expect = 5e-22 Identities = 114/133 (85%) Strand = Plus / Plus Query: 304 aggttaaatggagacaagtggctttgttggagcgagacattctcctgaaaaatctaaaga 363 |||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||| Sbjct: 134220 aggttaaatggagacaagctgctttattggagcgagacatccttctgaaaaatctaaaga 134279 Query: 364 gtgtactggaatcactgagaggtcaagtcactggcaaaactaaggacgaaattgaggagt 423 ||||| | ||||| |||||| ||| ||| | || ||| |||||| ||||||||||||| Sbjct: 134280 gtgtattagaatcgctgagaagtcgagttgcagggaaacataaggatgaaattgaggagt 134339 Query: 424 ctatttctatggt 436 | |||||||||| Sbjct: 134340 ccctttctatggt 134352 Score = 111 bits (56), Expect = 2e-21 Identities = 188/232 (81%) Strand = Plus / Plus Query: 76 cagggccactgcgtccagcaaatatcataaggaataaatttcctacctacaagaatggtt 135 |||||||| ||||||| ||||| |||| || |||||||| ||||| |||||||| ||| Sbjct: 133859 cagggccattgcgtcctgcaaacttcatcagaaataaattccctacatacaagaagagtt 133918 Query: 136 cgaatggcatagtgatcaagctggcagatggcccagaagtgccgcctctcaaggaggttg 195 |||||| ||||| ||||| || |||||| | |||| |||| |||| || |||| || Sbjct: 133919 tgaatgggatagttatcaaattgacagatgatcaagaaatgccatctctgaaagaggctg 133978 Query: 196 ttgctaaggagaccgaggaactgcttgatcgccgtcagcgcttctcagtccgtgagcttg 255 |||| ||||| || | || || ||| |||| |||||||| | |||||||||||||||| Sbjct: 133979 ttgccaaggaaacagcagacctacttcatcggagtcagcgcctttcagtccgtgagcttg 134038 Query: 256 caatgaagtttgagaagggactcaacactgccactctgttgtctaaagaggt 307 | ||||| ||||||||||| || ||||||||||| |||||||||| ||||| Sbjct: 134039 ctatgaaatttgagaagggtcttaacactgccacattgttgtctaatgaggt 134090
>emb|AL157718.10| Human DNA sequence from clone RP11-23O13 on chromosome 20 Contains a novel gene, the 5' end of a novel gene and a CpG island, complete sequence Length = 84216 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 78 gggccactgcgtccagcaaata 99 |||||||||||||||||||||| Sbjct: 12385 gggccactgcgtccagcaaata 12364
>gb|M83677.1|RATRAB10X Sprague-Dawley (clone LRB3) RAB10 mRNA, complete cds Length = 991 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 421 agtctatttctatggtggaaat 442 |||||||||||||||||||||| Sbjct: 336 agtctatttctatggtggaaat 315
>gb|AC161180.3| Mus musculus chromosome 1, clone RP23-149C6, complete sequence Length = 215599 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 427 tttctatggtggaaattcttg 447 ||||||||||||||||||||| Sbjct: 63330 tttctatggtggaaattcttg 63310
>gb|AC011359.5|AC011359 Homo sapiens chromosome 5 clone CTC-370H24, complete sequence Length = 195887 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 tcataaggaataaatttccta 120 ||||||||||||||||||||| Sbjct: 62703 tcataaggaataaatttccta 62723
>gb|AC123676.9| Mus musculus chromosome 1, clone RP23-275F9, complete sequence Length = 169201 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 427 tttctatggtggaaattcttg 447 ||||||||||||||||||||| Sbjct: 10617 tttctatggtggaaattcttg 10637
>ref|NM_124062.1| Arabidopsis thaliana transcription factor AT5G46910 mRNA, complete cds Length = 2124 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 tgcaatgaagtttgagaagg 273 |||||||||||||||||||| Sbjct: 1413 tgcaatgaagtttgagaagg 1432
>ref|NM_187961.1| Oryza sativa (japonica cultivar-group), Ozsa8381 predicted mRNA Length = 3993 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 ggaactgcttgatcgccgtc 231 |||||||||||||||||||| Sbjct: 1681 ggaactgcttgatcgccgtc 1662
>ref|NM_194720.1| Oryza sativa (japonica cultivar-group) putative pol polyprotein (OSJNBb0072F04.17), mRNA Length = 4281 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 ggaactgcttgatcgccgtc 231 |||||||||||||||||||| Sbjct: 1882 ggaactgcttgatcgccgtc 1863
>gb|AC110230.12| Mus musculus chromosome 6, clone RP23-54L18, complete sequence Length = 216521 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 agaggttaaatggagacaag 321 |||||||||||||||||||| Sbjct: 180218 agaggttaaatggagacaag 180237
>gb|AC112686.10| Mus musculus chromosome 6, clone RP23-354N21, complete sequence Length = 222603 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 agaggttaaatggagacaag 321 |||||||||||||||||||| Sbjct: 216884 agaggttaaatggagacaag 216865
>ref|XM_948699.1| Theileria annulata strain Ankara hypothetical protein (TA16465) partial mRNA Length = 2925 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 aatttgtattttatagatga 20 |||||||||||||||||||| Sbjct: 1738 aatttgtattttatagatga 1757
>emb|AL591901.12| Human DNA sequence from clone RP11-400C4 on chromosome 1, complete sequence Length = 129844 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 cactgagaggtcaagtcact 395 |||||||||||||||||||| Sbjct: 31721 cactgagaggtcaagtcact 31702
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 ggaactgcttgatcgccgtc 231 |||||||||||||||||||| Sbjct: 1860944 ggaactgcttgatcgccgtc 1860925
>gb|AC021657.19| Homo sapiens 3 BAC RP11-490B19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170046 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 ggtggaaattcttgcagttc 453 |||||||||||||||||||| Sbjct: 98759 ggtggaaattcttgcagttc 98740
>gb|AC122147.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0072F04, complete sequence Length = 137724 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 ggaactgcttgatcgccgtc 231 |||||||||||||||||||| Sbjct: 79397 ggaactgcttgatcgccgtc 79378
>gb|AC092553.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0072F04, complete sequence Length = 133121 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 ggaactgcttgatcgccgtc 231 |||||||||||||||||||| Sbjct: 112518 ggaactgcttgatcgccgtc 112499
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 ggaactgcttgatcgccgtc 231 |||||||||||||||||||| Sbjct: 1860944 ggaactgcttgatcgccgtc 1860925
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 ggaactgcttgatcgccgtc 231 |||||||||||||||||||| Sbjct: 8824390 ggaactgcttgatcgccgtc 8824409
>dbj|BA000020.2| Nostoc sp. PCC 7120 plasmid pCC7120alpha DNA, complete genome Length = 408101 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 96 aatatcataaggaataaatttcct 119 ||||| |||||||||||||||||| Sbjct: 163385 aatatgataaggaataaatttcct 163362
>dbj|AP001366.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0469E09 Length = 146081 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 ggaactgcttgatcgccgtc 231 |||||||||||||||||||| Sbjct: 60418 ggaactgcttgatcgccgtc 60437
>dbj|AB013394.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQD22 Length = 85661 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 tgcaatgaagtttgagaagg 273 |||||||||||||||||||| Sbjct: 18499 tgcaatgaagtttgagaagg 18518
>dbj|AK069171.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023005P22, full insert sequence Length = 4721 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 ggaactgcttgatcgccgtc 231 |||||||||||||||||||| Sbjct: 2002 ggaactgcttgatcgccgtc 1983
>emb|AL935145.12| Zebrafish DNA sequence from clone CH211-173B9 in linkage group 20, complete sequence Length = 157156 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 338 agacattctcctgaaaaatctaaa 361 |||| ||||||||||||||||||| Sbjct: 132699 agactttctcctgaaaaatctaaa 132676
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 ggaactgcttgatcgccgtc 231 |||||||||||||||||||| Sbjct: 1860895 ggaactgcttgatcgccgtc 1860876
>emb|AL772204.13| Mouse DNA sequence from clone RP23-375M22 on chromosome 4, complete sequence Length = 45419 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 tagatgacctgggctgcgac 33 |||||||||||||||||||| Sbjct: 30345 tagatgacctgggctgcgac 30364 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,949,129 Number of Sequences: 3902068 Number of extensions: 3949129 Number of successful extensions: 75999 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75808 Number of HSP's gapped (non-prelim): 183 length of query: 457 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 435 effective length of database: 17,147,199,772 effective search space: 7459031900820 effective search space used: 7459031900820 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)