ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags6j03 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | H2B2_MAIZE (P30756) Histone H2B.2 | 30 | 1.5 | 2 | H2B1_WHEAT (P27807) Histone H2B | 30 | 1.5 | 3 | H2B5_MAIZE (P54348) Histone H2B | 30 | 1.5 | 4 | H2B2_WHEAT (P05621) Histone H2B.2 | 30 | 1.5 | 5 | H2B1_MAIZE (P30755) Histone H2B.1 | 30 | 1.5 | 6 | H2B4_MAIZE (P49120) Histone H2B.4 | 30 | 1.5 | 7 | H2B3_MAIZE (Q43261) Histone H2B.3 | 30 | 2.0 | 8 | H2B_GOSHI (O22582) Histone H2B | 29 | 3.3 | 9 | H2B_CAPAN (O49118) Histone H2B (CaH2B) | 29 | 3.3 | 10 | H2B_ARATH (P40283) Histone H2B | 29 | 3.3 | 11 | H2B3_VOLCA (P16867) Histone H2B-III | 29 | 4.4 | 12 | H2B4_CHLRE (P54347) Histone H2B-IV | 29 | 4.4 | 13 | H2B3_CHLRE (P54346) Histone H2B-III | 29 | 4.4 | 14 | H2B1_CHLRE (P50565) Histone H2B-I | 29 | 4.4 | 15 | H2B4_VOLCA (P16868) Histone H2B-IV | 29 | 4.4 | 16 | H2B2_CHLRE (P54345) Histone H2B-II | 29 | 4.4 | 17 | H2B_TOBAC (P93354) Histone H2B | 28 | 9.7 |
|---|
>H2B2_MAIZE (P30756) Histone H2B.2| Length = 150 Score = 30.4 bits (67), Expect = 1.5 Identities = 14/14 (100%), Positives = 14/14 (100%) Frame = +1 Query: 1 KPTITSREIQTSVR 42 KPTITSREIQTSVR Sbjct: 112 KPTITSREIQTSVR 125
>H2B1_WHEAT (P27807) Histone H2B| Length = 152 Score = 30.4 bits (67), Expect = 1.5 Identities = 14/14 (100%), Positives = 14/14 (100%) Frame = +1 Query: 1 KPTITSREIQTSVR 42 KPTITSREIQTSVR Sbjct: 114 KPTITSREIQTSVR 127
>H2B5_MAIZE (P54348) Histone H2B| Length = 154 Score = 30.4 bits (67), Expect = 1.5 Identities = 14/14 (100%), Positives = 14/14 (100%) Frame = +1 Query: 1 KPTITSREIQTSVR 42 KPTITSREIQTSVR Sbjct: 116 KPTITSREIQTSVR 129
>H2B2_WHEAT (P05621) Histone H2B.2| Length = 149 Score = 30.4 bits (67), Expect = 1.5 Identities = 14/14 (100%), Positives = 14/14 (100%) Frame = +1 Query: 1 KPTITSREIQTSVR 42 KPTITSREIQTSVR Sbjct: 111 KPTITSREIQTSVR 124
>H2B1_MAIZE (P30755) Histone H2B.1| Length = 151 Score = 30.4 bits (67), Expect = 1.5 Identities = 14/14 (100%), Positives = 14/14 (100%) Frame = +1 Query: 1 KPTITSREIQTSVR 42 KPTITSREIQTSVR Sbjct: 113 KPTITSREIQTSVR 126
>H2B4_MAIZE (P49120) Histone H2B.4| Length = 137 Score = 30.4 bits (67), Expect = 1.5 Identities = 14/14 (100%), Positives = 14/14 (100%) Frame = +1 Query: 1 KPTITSREIQTSVR 42 KPTITSREIQTSVR Sbjct: 99 KPTITSREIQTSVR 112
>H2B3_MAIZE (Q43261) Histone H2B.3| Length = 153 Score = 30.0 bits (66), Expect = 2.0 Identities = 13/14 (92%), Positives = 14/14 (100%) Frame = +1 Query: 1 KPTITSREIQTSVR 42 KPT+TSREIQTSVR Sbjct: 115 KPTVTSREIQTSVR 128
>H2B_GOSHI (O22582) Histone H2B| Length = 147 Score = 29.3 bits (64), Expect = 3.3 Identities = 13/14 (92%), Positives = 14/14 (100%) Frame = +1 Query: 1 KPTITSREIQTSVR 42 KPTITSREIQT+VR Sbjct: 109 KPTITSREIQTAVR 122
>H2B_CAPAN (O49118) Histone H2B (CaH2B)| Length = 145 Score = 29.3 bits (64), Expect = 3.3 Identities = 13/14 (92%), Positives = 14/14 (100%) Frame = +1 Query: 1 KPTITSREIQTSVR 42 KPTITSREIQT+VR Sbjct: 107 KPTITSREIQTAVR 120
>H2B_ARATH (P40283) Histone H2B| Length = 150 Score = 29.3 bits (64), Expect = 3.3 Identities = 13/14 (92%), Positives = 14/14 (100%) Frame = +1 Query: 1 KPTITSREIQTSVR 42 KPTITSREIQT+VR Sbjct: 112 KPTITSREIQTAVR 125
>H2B3_VOLCA (P16867) Histone H2B-III| Length = 157 Score = 28.9 bits (63), Expect = 4.4 Identities = 12/14 (85%), Positives = 14/14 (100%) Frame = +1 Query: 1 KPTITSREIQTSVR 42 KPT+TSREIQT+VR Sbjct: 119 KPTVTSREIQTAVR 132
>H2B4_CHLRE (P54347) Histone H2B-IV| Length = 153 Score = 28.9 bits (63), Expect = 4.4 Identities = 12/14 (85%), Positives = 14/14 (100%) Frame = +1 Query: 1 KPTITSREIQTSVR 42 KPT+TSREIQT+VR Sbjct: 115 KPTVTSREIQTAVR 128
>H2B3_CHLRE (P54346) Histone H2B-III| Length = 153 Score = 28.9 bits (63), Expect = 4.4 Identities = 12/14 (85%), Positives = 14/14 (100%) Frame = +1 Query: 1 KPTITSREIQTSVR 42 KPT+TSREIQT+VR Sbjct: 115 KPTVTSREIQTAVR 128
>H2B1_CHLRE (P50565) Histone H2B-I| Length = 153 Score = 28.9 bits (63), Expect = 4.4 Identities = 12/14 (85%), Positives = 14/14 (100%) Frame = +1 Query: 1 KPTITSREIQTSVR 42 KPT+TSREIQT+VR Sbjct: 115 KPTVTSREIQTAVR 128
>H2B4_VOLCA (P16868) Histone H2B-IV| Length = 155 Score = 28.9 bits (63), Expect = 4.4 Identities = 12/14 (85%), Positives = 14/14 (100%) Frame = +1 Query: 1 KPTITSREIQTSVR 42 KPT+TSREIQT+VR Sbjct: 117 KPTVTSREIQTAVR 130
>H2B2_CHLRE (P54345) Histone H2B-II| Length = 156 Score = 28.9 bits (63), Expect = 4.4 Identities = 12/14 (85%), Positives = 14/14 (100%) Frame = +1 Query: 1 KPTITSREIQTSVR 42 KPT+TSREIQT+VR Sbjct: 118 KPTVTSREIQTAVR 131
>H2B_TOBAC (P93354) Histone H2B| Length = 146 Score = 27.7 bits (60), Expect = 9.7 Identities = 12/14 (85%), Positives = 14/14 (100%) Frame = +1 Query: 1 KPTITSREIQTSVR 42 KPTI+SREIQT+VR Sbjct: 108 KPTISSREIQTAVR 121 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.308 0.120 0.296 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,669,036 Number of Sequences: 219361 Number of extensions: 14311 Number of successful extensions: 128 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 128 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 128 length of database: 80,573,946 effective HSP length: 0 effective length of database: 80,573,946 effective search space used: 1933774704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits)
