ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6i18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY106714.1| Zea mays PCO119626 mRNA sequence 92 3e-16
2ref|XM_465817.1| Oryza sativa (japonica cultivar-group), mRNA 60 1e-06
3ref|XM_506807.1| PREDICTED Oryza sativa (japonica cultivar-group... 60 1e-06
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 60 1e-06
5dbj|AP005630.3| Oryza sativa (japonica cultivar-group) genomic D... 60 1e-06
6dbj|AK102664.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 1e-06
7dbj|AK069572.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 1e-06
8gb|AY653224.1| Malus x domestica glycosyl transferase-like prote... 38 3.9
9emb|AL354932.26| Human DNA sequence from clone RP11-117L21 on ch... 38 3.9

>gb|AY106714.1| Zea mays PCO119626 mRNA sequence
          Length = 1251

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 75/86 (87%)
 Strand = Plus / Minus

                                                                        
Query: 4    aagcttgngantgccactaangatgctagcaatatgaagatcangaatcccaagcatctt 63
            ||||||| || |||||| || ||||| |||||||||||| | | |||||||||  |||| 
Sbjct: 1092 aagcttgagaatgccaccaaagatgccagcaatatgaagtttaggaatcccaaatatctg 1033

                                      
Query: 64   tctatgcttaatcacttgcgattcta 89
            ||||||||||||||||||||||||||
Sbjct: 1032 tctatgcttaatcacttgcgattcta 1007



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>ref|XM_465817.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2022

 Score = 60.0 bits (30), Expect = 1e-06
 Identities = 71/86 (82%)
 Strand = Plus / Plus

                                                                        
Query: 4    aagcttgngantgccactaangatgctagcaatatgaagatcangaatcccaagcatctt 63
            ||||||| || ||| || || |||||||| ||||||||| | | ||| |||||| |||| 
Sbjct: 1008 aagcttgagaatgctacaaaagatgctagtaatatgaagtttaggaaccccaagtatctc 1067

                                      
Query: 64   tctatgcttaatcacttgcgattcta 89
            || ||||| ||||||||||| |||||
Sbjct: 1068 tcgatgctcaatcacttgcggttcta 1093



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>ref|XM_506807.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0021C10.5
            mRNA
          Length = 2047

 Score = 60.0 bits (30), Expect = 1e-06
 Identities = 71/86 (82%)
 Strand = Plus / Plus

                                                                        
Query: 4    aagcttgngantgccactaangatgctagcaatatgaagatcangaatcccaagcatctt 63
            ||||||| || ||| || || |||||||| ||||||||| | | ||| |||||| |||| 
Sbjct: 1031 aagcttgagaatgctacaaaagatgctagtaatatgaagtttaggaaccccaagtatctc 1090

                                      
Query: 64   tctatgcttaatcacttgcgattcta 89
            || ||||| ||||||||||| |||||
Sbjct: 1091 tcgatgctcaatcacttgcggttcta 1116



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 60.0 bits (30), Expect = 1e-06
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                            
Query: 4        aagcttgngantgccactaangatgctagcaatatgaagatcangaatcccaagcatctt 63
                ||||||| || ||| || || |||||||| ||||||||| | | ||| |||||| |||| 
Sbjct: 17660411 aagcttgagaatgctacaaaagatgctagtaatatgaagtttaggaaccccaagtatctc 17660352

                                          
Query: 64       tctatgcttaatcacttgcgattcta 89
                || ||||| ||||||||||| |||||
Sbjct: 17660351 tcgatgctcaatcacttgcggttcta 17660326



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>dbj|AP005630.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0021C10
          Length = 119527

 Score = 60.0 bits (30), Expect = 1e-06
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                         
Query: 4     aagcttgngantgccactaangatgctagcaatatgaagatcangaatcccaagcatctt 63
             ||||||| || ||| || || |||||||| ||||||||| | | ||| |||||| |||| 
Sbjct: 16425 aagcttgagaatgctacaaaagatgctagtaatatgaagtttaggaaccccaagtatctc 16366

                                       
Query: 64    tctatgcttaatcacttgcgattcta 89
             || ||||| ||||||||||| |||||
Sbjct: 16365 tcgatgctcaatcacttgcggttcta 16340



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>dbj|AK102664.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101K22, full
            insert sequence
          Length = 2023

 Score = 60.0 bits (30), Expect = 1e-06
 Identities = 71/86 (82%)
 Strand = Plus / Plus

                                                                        
Query: 4    aagcttgngantgccactaangatgctagcaatatgaagatcangaatcccaagcatctt 63
            ||||||| || ||| || || |||||||| ||||||||| | | ||| |||||| |||| 
Sbjct: 1009 aagcttgagaatgctacaaaagatgctagtaatatgaagtttaggaaccccaagtatctc 1068

                                      
Query: 64   tctatgcttaatcacttgcgattcta 89
            || ||||| ||||||||||| |||||
Sbjct: 1069 tcgatgctcaatcacttgcggttcta 1094



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>dbj|AK069572.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023H24, full
            insert sequence
          Length = 2047

 Score = 60.0 bits (30), Expect = 1e-06
 Identities = 71/86 (82%)
 Strand = Plus / Plus

                                                                        
Query: 4    aagcttgngantgccactaangatgctagcaatatgaagatcangaatcccaagcatctt 63
            ||||||| || ||| || || |||||||| ||||||||| | | ||| |||||| |||| 
Sbjct: 1031 aagcttgagaatgctacaaaagatgctagtaatatgaagtttaggaaccccaagtatctc 1090

                                      
Query: 64   tctatgcttaatcacttgcgattcta 89
            || ||||| ||||||||||| |||||
Sbjct: 1091 tcgatgctcaatcacttgcggttcta 1116



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>gb|AY653224.1| Malus x domestica glycosyl transferase-like protein (GT) mRNA,
           partial cds
          Length = 750

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 59  atctttctatgcttaatca 77
           |||||||||||||||||||
Sbjct: 524 atctttctatgcttaatca 542



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>emb|AL354932.26| Human DNA sequence from clone RP11-117L21 on chromosome 9 Contains the 5'
              end of the MELK gene for maternal embryonic leucine zipper
              kinase (KIAA0175) and two CpG islands, complete sequence
          Length = 155989

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 51     tcccaagcatctttctatgctta 73
              |||||||||||||| ||||||||
Sbjct: 131756 tcccaagcatctttttatgctta 131778


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 364,214
Number of Sequences: 3902068
Number of extensions: 364214
Number of successful extensions: 22135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22117
Number of HSP's gapped (non-prelim): 18
length of query: 91
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 70
effective length of database: 17,151,101,840
effective search space: 1200577128800
effective search space used: 1200577128800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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