ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6h19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ748324.1| Sulfolobus islandicus plasmid pHVE14 40 1.0
2gb|AY118655.1| Drosophila melanogaster SD07306 full insert cDNA 40 1.0
3ref|NM_206003.1| Drosophila melanogaster Numb-associated kinase ... 40 1.0
4ref|NM_057818.2| Drosophila melanogaster Numb-associated kinase ... 40 1.0
5ref|NM_057817.2| Drosophila melanogaster Numb-associated kinase ... 40 1.0
6gb|AY058640.1| Drosophila melanogaster LD33980 full length cDNA 40 1.0
7gb|AC009205.6|AC009205 Drosophila melanogaster, chromosome 2L, r... 40 1.0
8gb|AC009204.5|AC009204 Drosophila melanogaster, chromosome 2L, r... 40 1.0
9gb|AC011756.5|AC011756 Drosophila melanogaster, chromosome 2L, r... 40 1.0
10gb|AF197910.1|AF197910 Drosophila melanogaster Numb-associated k... 40 1.0
11gb|AE003661.3| Drosophila melanogaster chromosome 2L, section 70... 40 1.0
12gb|AC162284.11| Mus musculus chromosome 8, clone RP23-256C11, co... 38 4.1
13gb|BC106536.1| Xenopus laevis cDNA clone IMAGE:7764459 38 4.1
14gb|BC080835.1| Xenopus laevis cDNA clone IMAGE:5513566 38 4.1
15emb|CR956379.5| Pig DNA sequence from clone CH242-196P11 on chro... 38 4.1
16emb|AL732437.12| Human DNA sequence from clone RP11-116G8 on chr... 38 4.1
17emb|AL158077.15| Human DNA sequence from clone RP11-471J7 on chr... 38 4.1
18emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 38 4.1
19gb|AC162033.11| Mus musculus chromosome 8, clone RP23-162M13, co... 38 4.1

>emb|AJ748324.1| Sulfolobus islandicus plasmid pHVE14
          Length = 35422

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 49   cagttccagttgcccctcct 68
            ||||||||||||||||||||
Sbjct: 4137 cagttccagttgcccctcct 4118



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>gb|AY118655.1| Drosophila melanogaster SD07306 full insert cDNA
          Length = 4179

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 64   ctcctggtgcagtgcctcct 83
            ||||||||||||||||||||
Sbjct: 2249 ctcctggtgcagtgcctcct 2268



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>ref|NM_206003.1| Drosophila melanogaster Numb-associated kinase CG10637-RC, transcript
            variant C (Nak), mRNA
          Length = 4166

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 64   ctcctggtgcagtgcctcct 83
            ||||||||||||||||||||
Sbjct: 2249 ctcctggtgcagtgcctcct 2268



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>ref|NM_057818.2| Drosophila melanogaster Numb-associated kinase CG10637-RB,
           transcript variant B (Nak), mRNA
          Length = 3319

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 64  ctcctggtgcagtgcctcct 83
           ||||||||||||||||||||
Sbjct: 414 ctcctggtgcagtgcctcct 433



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>ref|NM_057817.2| Drosophila melanogaster Numb-associated kinase CG10637-RA, transcript
            variant A (Nak), mRNA
          Length = 5154

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 64   ctcctggtgcagtgcctcct 83
            ||||||||||||||||||||
Sbjct: 2249 ctcctggtgcagtgcctcct 2268



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>gb|AY058640.1| Drosophila melanogaster LD33980 full length cDNA
          Length = 3308

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 64  ctcctggtgcagtgcctcct 83
           ||||||||||||||||||||
Sbjct: 366 ctcctggtgcagtgcctcct 385



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>gb|AC009205.6|AC009205 Drosophila melanogaster, chromosome 2L, region 36E-37C, BAC clone
            BACR04C20, complete sequence
          Length = 166918

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 64   ctcctggtgcagtgcctcct 83
            ||||||||||||||||||||
Sbjct: 2543 ctcctggtgcagtgcctcct 2524



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>gb|AC009204.5|AC009204 Drosophila melanogaster, chromosome 2L, region 36E-37C, BAC clone
              BACR03E19, complete sequence
          Length = 167777

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 64     ctcctggtgcagtgcctcct 83
              ||||||||||||||||||||
Sbjct: 137525 ctcctggtgcagtgcctcct 137506



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>gb|AC011756.5|AC011756 Drosophila melanogaster, chromosome 2L, region 36E-37C, BAC clone
             BACR17A06, complete sequence
          Length = 170546

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    ctcctggtgcagtgcctcct 83
             ||||||||||||||||||||
Sbjct: 88111 ctcctggtgcagtgcctcct 88092



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>gb|AF197910.1|AF197910 Drosophila melanogaster Numb-associated kinase (Nak) mRNA, complete
            cds
          Length = 5118

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 64   ctcctggtgcagtgcctcct 83
            ||||||||||||||||||||
Sbjct: 2207 ctcctggtgcagtgcctcct 2226



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>gb|AE003661.3| Drosophila melanogaster chromosome 2L, section 70 of 83 of the complete
             sequence
          Length = 265558

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    ctcctggtgcagtgcctcct 83
             ||||||||||||||||||||
Sbjct: 53249 ctcctggtgcagtgcctcct 53230



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>gb|AC162284.11| Mus musculus chromosome 8, clone RP23-256C11, complete sequence
          Length = 162981

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 62     ccctcctggtgcagtgcct 80
              |||||||||||||||||||
Sbjct: 109861 ccctcctggtgcagtgcct 109843



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>gb|BC106536.1| Xenopus laevis cDNA clone IMAGE:7764459
          Length = 762

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 62  ccctcctggtgcagtgcctcctg 84
           |||||||||| ||||||||||||
Sbjct: 128 ccctcctggtacagtgcctcctg 150



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>gb|BC080835.1| Xenopus laevis cDNA clone IMAGE:5513566
          Length = 683

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 62 ccctcctggtgcagtgcctcctg 84
          |||||||||| ||||||||||||
Sbjct: 75 ccctcctggtacagtgcctcctg 97



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>emb|CR956379.5| Pig DNA sequence from clone CH242-196P11 on chromosome 7, complete
              sequence
          Length = 200057

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 45     ggaccagttccagttgcccctcc 67
              |||||||||||||||| ||||||
Sbjct: 111812 ggaccagttccagttgaccctcc 111834



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>emb|AL732437.12| Human DNA sequence from clone RP11-116G8 on chromosome 10 Contains the
             NET1 gene for neuroepithelial cell transforming gene 1,
             the gene for calmodulin-like skin protein (CLSP), the
             CALML3 gene for calmodulin-like 3 (CLP) and four CpG
             islands, complete sequence
          Length = 183441

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 52    ttccagttgcccctcctggtgca 74
             |||||||||||||||| ||||||
Sbjct: 35954 ttccagttgcccctccaggtgca 35976



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>emb|AL158077.15| Human DNA sequence from clone RP11-471J7 on chromosome 9 Contains the
             5' end of the SLC24A2 gene for solute carrier family 24
             (sodium/potassium/calcium exchanger), member 2 (NCKX2) and
             a CpG island, complete sequence
          Length = 159900

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 56    agttgcccctcctggtgca 74
             |||||||||||||||||||
Sbjct: 63921 agttgcccctcctggtgca 63903



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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 72      gcagtgcctcctgtgcagc 90
               |||||||||||||||||||
Sbjct: 1869424 gcagtgcctcctgtgcagc 1869442



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>gb|AC162033.11| Mus musculus chromosome 8, clone RP23-162M13, complete sequence
          Length = 217343

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 62    ccctcctggtgcagtgcct 80
             |||||||||||||||||||
Sbjct: 31971 ccctcctggtgcagtgcct 31953


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 561,982
Number of Sequences: 3902068
Number of extensions: 561982
Number of successful extensions: 40208
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40178
Number of HSP's gapped (non-prelim): 30
length of query: 94
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 73
effective length of database: 17,151,101,840
effective search space: 1252030434320
effective search space used: 1252030434320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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