ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags6h17 |
|---|---|
| Clone Library Name | barley_pub |
>SPG21_BRARE (Q6PC62) Maspardin (Spastic paraplegia 21 autosomal recessive Mast| syndrome protein homolog) Length = 311 Score = 116 bits (291), Expect = 5e-26 Identities = 58/129 (44%), Positives = 90/129 (69%), Gaps = 1/129 (0%) Frame = +1 Query: 55 WSPLVSWT-PSFLLKRYLLTGIRDGPHEPFIADSVDFVVGQVETLSREDLSSRLILNVNV 231 W+ W PSF+LK+ +L GP +P +AD++DF+V ++E+L++ +L+SRL LN Sbjct: 147 WTANSFWLMPSFMLKKIVLGNFAKGPVDPKMADAIDFMVDRLESLNQSELASRLTLNCQN 206 Query: 232 ASVGSLSLPDSFVTIMDTSDYSAVPQQLKDQVNERYPSAKRAVLRTGGDFPFLSRPDEVN 411 + V + D VTIMD D SA+ Q+ K+++ + YP+A+RA L+TGG+FP+L R EVN Sbjct: 207 SYVEPHKIKDIAVTIMDVFDQSALSQEAKEEMYKLYPNARRAHLKTGGNFPYLCRSAEVN 266 Query: 412 LYLQLHLRR 438 LY+Q+HLR+ Sbjct: 267 LYIQIHLRQ 275
>SPG21_XENLA (Q5FVD6) Maspardin (Spastic paraplegia 21 autosomal recessive Mast| syndrome protein homolog) Length = 310 Score = 114 bits (286), Expect = 2e-25 Identities = 57/129 (44%), Positives = 89/129 (68%), Gaps = 1/129 (0%) Frame = +1 Query: 55 WSPLVSWT-PSFLLKRYLLTGIRDGPHEPFIADSVDFVVGQVETLSREDLSSRLILNVNV 231 W+ W P+F+LK+ LL GP +P +AD++DF+V ++E+L++ +L+SRL LN Sbjct: 147 WTANSFWLMPAFMLKKILLGNFSSGPVDPVMADAIDFMVDRLESLNQSELASRLTLNCQN 206 Query: 232 ASVGSLSLPDSFVTIMDTSDYSAVPQQLKDQVNERYPSAKRAVLRTGGDFPFLSRPDEVN 411 A V + D+ VTIMD D SA+ K+++ + YP+A+RA L+TGG+FP+L R EV+ Sbjct: 207 AYVEPHKIRDTAVTIMDVFDQSALSMDAKEEMYKLYPNARRAHLKTGGNFPYLCRSAEVS 266 Query: 412 LYLQLHLRR 438 LY+Q+HLR+ Sbjct: 267 LYVQIHLRQ 275
>SPG21_BOVIN (Q8MJJ1) Maspardin (Spastic paraplegia 21 autosomal recessive Mast| syndrome protein homolog) Length = 308 Score = 112 bits (279), Expect = 1e-24 Identities = 56/127 (44%), Positives = 86/127 (67%), Gaps = 1/127 (0%) Frame = +1 Query: 55 WSPLVSWT-PSFLLKRYLLTGIRDGPHEPFIADSVDFVVGQVETLSREDLSSRLILNVNV 231 W+ W PSF+LK+ +L GP +P +AD++DF+V ++E+L + +L+SRL LN Sbjct: 147 WTASSFWLMPSFMLKKIVLGNFSSGPVDPMMADAIDFMVDRLESLGQSELASRLTLNCQN 206 Query: 232 ASVGSLSLPDSFVTIMDTSDYSAVPQQLKDQVNERYPSAKRAVLRTGGDFPFLSRPDEVN 411 + V + D VTIMD D SA+ + K+++ + YP+A+RA L+TGG+FP+L R EVN Sbjct: 207 SYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYKLYPNARRAHLKTGGNFPYLCRSAEVN 266 Query: 412 LYLQLHL 432 LY+Q+HL Sbjct: 267 LYVQIHL 273
>SPG21_MOUSE (Q9CQC8) Maspardin (Spastic paraplegia 21 autosomal recessive Mast| syndrome protein homolog) (Acid cluster protein 33) Length = 308 Score = 110 bits (275), Expect = 4e-24 Identities = 55/127 (43%), Positives = 86/127 (67%), Gaps = 1/127 (0%) Frame = +1 Query: 55 WSPLVSWT-PSFLLKRYLLTGIRDGPHEPFIADSVDFVVGQVETLSREDLSSRLILNVNV 231 W+ W P+F+LK+ +L GP +P +AD++DF+V ++E+L + +L+SRL LN Sbjct: 147 WTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADAIDFMVDRLESLGQSELASRLTLNCQN 206 Query: 232 ASVGSLSLPDSFVTIMDTSDYSAVPQQLKDQVNERYPSAKRAVLRTGGDFPFLSRPDEVN 411 + V + D VTIMD D SA+ + K+++ + YP+A+RA L+TGG+FP+L R EVN Sbjct: 207 SYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYKLYPNARRAHLKTGGNFPYLCRSAEVN 266 Query: 412 LYLQLHL 432 LY+Q+HL Sbjct: 267 LYVQIHL 273
>SPG21_MACFA (Q4R5H6) Maspardin (Spastic paraplegia 21 autosomal recessive Mast| syndrome protein homolog) Length = 308 Score = 110 bits (275), Expect = 4e-24 Identities = 55/127 (43%), Positives = 86/127 (67%), Gaps = 1/127 (0%) Frame = +1 Query: 55 WSPLVSWT-PSFLLKRYLLTGIRDGPHEPFIADSVDFVVGQVETLSREDLSSRLILNVNV 231 W+ W P+F+LK+ +L GP +P +AD++DF+V ++E+L + +L+SRL LN Sbjct: 147 WTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADAIDFMVDRLESLGQSELASRLTLNCQN 206 Query: 232 ASVGSLSLPDSFVTIMDTSDYSAVPQQLKDQVNERYPSAKRAVLRTGGDFPFLSRPDEVN 411 + V + D VTIMD D SA+ + K+++ + YP+A+RA L+TGG+FP+L R EVN Sbjct: 207 SYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYKLYPNARRAHLKTGGNFPYLCRSAEVN 266 Query: 412 LYLQLHL 432 LY+Q+HL Sbjct: 267 LYVQIHL 273
>SPG21_HUMAN (Q9NZD8) Maspardin (Spastic paraplegia 21 autosomal recessive Mast| syndrome protein) (Acid cluster protein 33) Length = 308 Score = 110 bits (275), Expect = 4e-24 Identities = 55/127 (43%), Positives = 86/127 (67%), Gaps = 1/127 (0%) Frame = +1 Query: 55 WSPLVSWT-PSFLLKRYLLTGIRDGPHEPFIADSVDFVVGQVETLSREDLSSRLILNVNV 231 W+ W P+F+LK+ +L GP +P +AD++DF+V ++E+L + +L+SRL LN Sbjct: 147 WTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADAIDFMVDRLESLGQSELASRLTLNCQN 206 Query: 232 ASVGSLSLPDSFVTIMDTSDYSAVPQQLKDQVNERYPSAKRAVLRTGGDFPFLSRPDEVN 411 + V + D VTIMD D SA+ + K+++ + YP+A+RA L+TGG+FP+L R EVN Sbjct: 207 SYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYKLYPNARRAHLKTGGNFPYLCRSAEVN 266 Query: 412 LYLQLHL 432 LY+Q+HL Sbjct: 267 LYVQIHL 273
>SPG21_PONPY (Q5RES2) Maspardin (Spastic paraplegia 21 autosomal recessive Mast| syndrome protein homolog) Length = 308 Score = 107 bits (268), Expect = 2e-23 Identities = 54/127 (42%), Positives = 85/127 (66%), Gaps = 1/127 (0%) Frame = +1 Query: 55 WSPLVSWT-PSFLLKRYLLTGIRDGPHEPFIADSVDFVVGQVETLSREDLSSRLILNVNV 231 W+ W P+F+LK+ +L GP +P +AD++DF+V ++E+L + +L+SRL LN Sbjct: 147 WTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADAIDFMVDRLESLGQSELASRLTLNCQN 206 Query: 232 ASVGSLSLPDSFVTIMDTSDYSAVPQQLKDQVNERYPSAKRAVLRTGGDFPFLSRPDEVN 411 + V + D VTIMD SA+ + K+++ + YP+A+RA L+TGG+FP+L R EVN Sbjct: 207 SYVEPHKIRDIPVTIMDVFGQSALSTEAKEEMYKLYPNARRAHLKTGGNFPYLCRSAEVN 266 Query: 412 LYLQLHL 432 LY+Q+HL Sbjct: 267 LYVQIHL 273
>SPG21_RAT (Q5XIC4) Maspardin (Spastic paraplegia 21 autosomal recessive Mast| syndrome protein homolog) Length = 261 Score = 58.2 bits (139), Expect = 2e-08 Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 1/77 (1%) Frame = +1 Query: 55 WSPLVSWT-PSFLLKRYLLTGIRDGPHEPFIADSVDFVVGQVETLSREDLSSRLILNVNV 231 W+ W P+F+LK+ +L GP +P +AD++DF+V ++E+L + +L+SRL LN Sbjct: 147 WTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADAIDFMVDRLESLGQSELASRLTLNCQN 206 Query: 232 ASVGSLSLPDSFVTIMD 282 + V + D VTIMD Sbjct: 207 SYVEPHKIRDIPVTIMD 223
>MSL3_DROVI (Q9NBL2) Protein male-specific lethal-3| Length = 543 Score = 35.4 bits (80), Expect = 0.15 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 2/104 (1%) Frame = +1 Query: 319 DQVNERYPSAKRAVLRTGGDFPFLSRPDEVNLYLQLHLRRVGVEPRPDLVQGFTRGGSS- 495 D ++ PS+K+ L GG D L + L + P+P+L RG S Sbjct: 128 DPLDISLPSSKKKRLARGGHVE-----DPTADPLDISLAHLPATPKPELPAQQKRGARSR 182 Query: 496 -GSSNDHEDGNSFDDHTRDDGHRSSGRDGRKTERSESGPPNSDG 624 GS N DG+ + +RD+ SSGR ++ ++S+ G N DG Sbjct: 183 DGSGNRSRDGSG--NRSRDN---SSGRK-KQRDKSKGGDKNDDG 220
>NNP1_MOUSE (P56183) NNP-1 protein (Novel nuclear protein 1) (Nop52)| Length = 494 Score = 34.3 bits (77), Expect = 0.33 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = +1 Query: 469 QGFTRGGSSGSSNDHEDGNSFDDHTRDDGHRSSGRDGRKTERSES-GPPNSDG 624 +G G G ++D +DG + DD DDG S G DG + +S G + DG Sbjct: 242 EGEASDGDDGEASDGDDGEASDD---DDGEASDGGDGDVADSDDSDGADDDDG 291
>NDRG1_XENTR (Q66IG4) Protein NDRG1| Length = 395 Score = 33.9 bits (76), Expect = 0.43 Identities = 35/161 (21%), Positives = 65/161 (40%), Gaps = 14/161 (8%) Frame = +1 Query: 202 SSRLILNVNVASVGSLSLPDSFVTIMDTSDYSAVPQQLKDQVNERYPSAKRAVLRTG--G 375 +SR L + GS ++ ++ D S + D N + K +L+ G Sbjct: 232 NSRRDLEIERPFPGSNTVTLKCPALLVVGDSSPAVDAVVD-CNSKLDPTKTTLLKMSDCG 290 Query: 376 DFPFLSRPDEVNLYLQLHLRRVGVEPRPDLVQGFTRGGSSGSSNDHEDGNSFDDHTRD-- 549 FP + +P ++ + ++ +G P + + S +S+ +DGN HT + Sbjct: 291 GFPQVVQPAKLAEAFKYFVQGMGYMPAASMTRLMRSRTGSAASSSSQDGNRSRSHTNEGS 350 Query: 550 -------DGHRS---SGRDGRKTERSESGPPNSDGLVPTSI 642 DG+RS +G R ++S NS+ P S+ Sbjct: 351 RSRSHTGDGNRSRAHTGDGNRSRSHTDSNNTNSEHNTPKSM 391
>NDR1B_XENLA (Q7ZWV3) Protein NDRG1-B (xNDRG1-B)| Length = 396 Score = 33.9 bits (76), Expect = 0.43 Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 14/121 (11%) Frame = +1 Query: 322 QVNERYPSAKRAVLRTG--GDFPFLSRPDEVNLYLQLHLRRVGVEPRPDLVQGFTRGGSS 495 + N + K +L+ G FP + +P ++ + ++ +G P + + S Sbjct: 272 ECNSKLDPTKTTLLKMSDCGGFPQVVQPAKLAEAFKYFVQGMGYMPAASMTRLMRSRTGS 331 Query: 496 GSSNDHEDGNSFDDHTRD---------DGHRS---SGRDGRKTERSESGPPNSDGLVPTS 639 +S+ +DGN HT + DG+RS +G R +++ NSD P S Sbjct: 332 AASSSSQDGNRSRSHTNEGSRSRSQTGDGNRSRAHTGDGNRSRSHTDTNNVNSDHNTPKS 391 Query: 640 I 642 + Sbjct: 392 M 392
>DHX9_PONPY (Q5R874) ATP-dependent RNA helicase A (EC 3.6.1.-) (Nuclear DNA| helicase II) (NDH II) (DEAH box protein 9) Length = 1269 Score = 33.1 bits (74), Expect = 0.73 Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 6/108 (5%) Frame = +1 Query: 274 IMDTSDYSAVPQQLKDQVNERYPSAKRAVLRTGGDFPFLSRPDEVNLYLQLHLRRVGVEP 453 +++ + A+ QL D VNER + R + SRP + L + R G P Sbjct: 1111 VVEVTKQPAIISQL-DPVNERMLNMIRQI----------SRPSAAGINLMIGSTRYGDGP 1159 Query: 454 RP------DLVQGFTRGGSSGSSNDHEDGNSFDDHTRDDGHRSSGRDG 579 RP D G+ RGGSS S + G S G+ S G G Sbjct: 1160 RPPKMARYDNGSGYRRGGSSYSGGGYGSGYS------SGGYGSGGYGG 1201
>NDR1A_XENLA (Q641F2) Protein NDRG1-A (xNDRG1-A)| Length = 396 Score = 32.7 bits (73), Expect = 0.96 Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 14/121 (11%) Frame = +1 Query: 322 QVNERYPSAKRAVLRTG--GDFPFLSRPDEVNLYLQLHLRRVGVEPRPDLVQGFTRGGSS 495 + N + K +L+ G FP + +P ++ + ++ +G P + + S Sbjct: 272 ECNSKLDPTKTTLLKMSDCGGFPQVIQPAKLAEAFKYFVQGMGYMPAASMTRLMRSRTGS 331 Query: 496 GSSNDHEDGNSFDDHTRD---------DGHRS---SGRDGRKTERSESGPPNSDGLVPTS 639 +S+ +DGN HT + DG+RS +G R +++ NSD P S Sbjct: 332 AASSSSQDGNRSRSHTNEGSRSRSHTGDGNRSRAHTGDGNRSRSHTDTNNINSDQNSPKS 391 Query: 640 I 642 + Sbjct: 392 M 392
>BIOH_PHOLL (Q7N9V7) Carboxylesterase bioH (EC 3.1.1.1) (Biotin synthesis| protein bioH) Length = 261 Score = 32.7 bits (73), Expect = 0.96 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 1/98 (1%) Frame = +1 Query: 151 SVDFVVGQVETLSREDLSSRLILNVNVASVGSLSLPDSFVTIMDTSDYSAVPQQLKDQVN 330 SV+ + +E L EDL L L++P F+ I D VP+++ + ++ Sbjct: 172 SVEVLHVGLEILRTEDLRQPL---------AELAIP--FLRIYGYLD-GLVPRKIINILD 219 Query: 331 ERYPSAKRAVLRTGGDFPFLSRPDE-VNLYLQLHLRRV 441 E++P + A++R PF+S PDE V L + R V Sbjct: 220 EKWPRSVSAMMRHAAHAPFISHPDEFVGLLTEFASREV 257
>DHX9_HUMAN (Q08211) ATP-dependent RNA helicase A (EC 3.6.1.-) (Nuclear DNA| helicase II) (NDH II) (DEAH box protein 9) Length = 1270 Score = 32.7 bits (73), Expect = 0.96 Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 6/108 (5%) Frame = +1 Query: 274 IMDTSDYSAVPQQLKDQVNERYPSAKRAVLRTGGDFPFLSRPDEVNLYLQLHLRRVGVEP 453 +++ + A+ QL D VNER + R + SRP + L + R G P Sbjct: 1111 VVEVTKQPAIISQL-DPVNERMLNMIRQI----------SRPSAAGINLMIGSTRYGDGP 1159 Query: 454 RP------DLVQGFTRGGSSGSSNDHEDGNSFDDHTRDDGHRSSGRDG 579 RP D G+ RGGSS S + G S G+ S G G Sbjct: 1160 RPPKMARYDNGSGYRRGGSSYSGGGYGGGYS------SGGYGSGGYGG 1201
>DVL2_MOUSE (Q60838) Segment polarity protein dishevelled homolog DVL-2| (Dishevelled-2) (DSH homolog 2) Length = 736 Score = 32.3 bits (72), Expect = 1.3 Identities = 19/51 (37%), Positives = 25/51 (49%) Frame = +1 Query: 466 VQGFTRGGSSGSSNDHEDGNSFDDHTRDDGHRSSGRDGRKTERSESGPPNS 618 + +T GG S SS H +G+ TR DG +GR GR ER+ S Sbjct: 571 LSSYTYGGGSASS-QHSEGSRSSGSTRSDG--GAGRTGRPEERAPESKSGS 618
>DVL2_HUMAN (O14641) Segment polarity protein dishevelled homolog DVL-2| (Dishevelled-2) (DSH homolog 2) Length = 736 Score = 32.3 bits (72), Expect = 1.3 Identities = 19/51 (37%), Positives = 25/51 (49%) Frame = +1 Query: 466 VQGFTRGGSSGSSNDHEDGNSFDDHTRDDGHRSSGRDGRKTERSESGPPNS 618 + +T GG S SS H +G+ TR DG +GR GR ER+ S Sbjct: 571 LSSYTYGGGSASS-QHSEGSRSSGSTRSDG--GAGRTGRPEERAPESKSGS 618
>RPIA_SILPO (Q5LTT5) Ribose-5-phosphate isomerase A (EC 5.3.1.6)| (Phosphoriboisomerase A) (PRI) Length = 262 Score = 31.6 bits (70), Expect = 2.1 Identities = 16/32 (50%), Positives = 21/32 (65%) Frame = +1 Query: 349 KRAVLRTGGDFPFLSRPDEVNLYLQLHLRRVG 444 + A LR GD PF++ DE N L LHL+R+G Sbjct: 167 RTATLRMNGDTPFVT--DEGNHILDLHLQRIG 196
>PLM2_PLAFA (P46925) Plasmepsin-2 precursor (EC 3.4.23.39) (Aspartic| hemoglobinase II) (PFAPD) Length = 453 Score = 31.6 bits (70), Expect = 2.1 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 1/96 (1%) Frame = +1 Query: 10 QIPFLXTHKFAAAMPWSPLVSWTPSFLLKRYLLTGIRDGPHEPFIAD-SVDFVVGQVETL 186 Q PF +A W P V T + L ++L + +E +++V G V Sbjct: 150 QQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVSGF 209 Query: 187 SREDLSSRLILNVNVASVGSLSLPDSFVTIMDTSDY 294 +DL +VG+LSLP F+ ++DT+ + Sbjct: 210 FSKDL----------VTVGNLSLPYKFIEVIDTNGF 235
>TRK1_YEAST (P12685) High-affinity potassium transport protein| Length = 1235 Score = 31.2 bits (69), Expect = 2.8 Identities = 19/70 (27%), Positives = 32/70 (45%) Frame = +1 Query: 412 LYLQLHLRRVGVEPRPDLVQGFTRGGSSGSSNDHEDGNSFDDHTRDDGHRSSGRDGRKTE 591 L L + +RR V L GG ++ +DGN DD ++ H +G+ ++ Sbjct: 985 LPLAISIRRTNVYEEQSLGLYGDMGGEPEDTDTEDDGNDEDDDEENESH-----EGQSSQ 1039 Query: 592 RSESGPPNSD 621 RS S N++ Sbjct: 1040 RSSSNNNNNN 1049
>NPTX2_CAVPO (P47970) Neuronal pentraxin-2 precursor (NP2) (Neuronal pentraxin| II) (NP-II) (Apexin) (Acrosomal pentaxin-like protein p50) (AM50) Length = 427 Score = 30.8 bits (68), Expect = 3.6 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%) Frame = -3 Query: 180 LYLTDYKIHRICNEWFMWTISDSC*EISLQQKRRGPADKWRPWH---SSSKLVCXQER 16 L+++D K H IC WT D E ++ G + PWH S L+ QE+ Sbjct: 298 LFVSDGKWHHIC---ITWTTRDGLWEAFQDGEKLGTGENLAPWHPIKSGGVLILGQEQ 352
>APAH_BUCAI (P57242) Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC| 3.6.1.41) (Diadenosine tetraphosphatase) (Ap4A hydrolase) (Diadenosine 5',5'''-P1,P4-tetraphosphate pyrophosphohydrolase) Length = 274 Score = 30.8 bits (68), Expect = 3.6 Identities = 17/41 (41%), Positives = 23/41 (56%) Frame = -1 Query: 134 SCGPSRIPVKRYLFSKKEGVQLTSGDHGIAAANLCVXKKGI 12 S GP + V +YL+S K+ VQ+ G+H I NL GI Sbjct: 40 SRGPDSLKVVKYLYSLKDRVQIVLGNHDI---NLIAVHAGI 77
>HORN_MOUSE (Q8VHD8) Hornerin| Length = 2496 Score = 30.4 bits (67), Expect = 4.8 Identities = 12/41 (29%), Positives = 22/41 (53%) Frame = +1 Query: 490 SSGSSNDHEDGNSFDDHTRDDGHRSSGRDGRKTERSESGPP 612 + +S+DHE+ ++ + G +S +GR + R SG P Sbjct: 163 TKSNSSDHENSEDYEQGQHESGFSNSSGNGRPSSRKASGFP 203
>DNMT1_PARLI (Q27746) DNA (cytosine-5)-methyltransferase PliMCI (EC 2.1.1.37)| (Dnmt1) (DNA methyltransferase PliMCI) (DNA MTase PliMCI) (MCMT) (M.PliMCI) Length = 1612 Score = 30.4 bits (67), Expect = 4.8 Identities = 16/50 (32%), Positives = 22/50 (44%) Frame = +1 Query: 472 GFTRGGSSGSSNDHEDGNSFDDHTRDDGHRSSGRDGRKTERSESGPPNSD 621 G T GG SS+ E G S + D +SG+ G K ++ G D Sbjct: 135 GHTNGGYVQSSSQEETGTSQSEEEMDMDTPTSGKGGSKKKKKSKGSGGGD 184
>CHD1_MOUSE (P40201) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)| (ATP-dependent helicase CHD1) (CHD-1) Length = 1711 Score = 30.4 bits (67), Expect = 4.8 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%) Frame = +1 Query: 472 GFTRGGSSGSSND---HEDGNSFDDHTRDDGHRS-SGRDGRKTERSESGPPNSDG 624 G G SSGSS+D + G+S D D G +S S D + + ++ PP DG Sbjct: 29 GSGSGSSSGSSSDGSSSQSGSSDSDSGSDSGSQSESESDTSRENKVQAKPPKVDG 83
>GNRP_RAT (P28818) Guanine nucleotide-releasing protein (GNRP) (P140 Ras-GRF)| Length = 1244 Score = 30.4 bits (67), Expect = 4.8 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 11/96 (11%) Frame = +1 Query: 79 PSFLLKRYLLTG---IRDGPHEPFIADSVDFVVGQVETLSR---EDLSSRLILNVNVA-- 234 P F + RY+LT + PHE +S+D+ ++E LSR +++S + N+A Sbjct: 381 PMFQIPRYILTLHELLAHTPHEHVERNSLDYAKSKLEELSRVMHDEVSETENIRKNLAIE 440 Query: 235 ---SVGSLSLPDSFVTIMDTSDYSAVPQQLKDQVNE 333 + G L D+ T + VP K ++N+ Sbjct: 441 RMITEGCEILLDTSQTFVRQGSLIQVPMSEKGKINK 476
>HYAD_ECOLI (P19930) Hydrogenase 1 maturation protease (EC 3.4.24.-)| Length = 195 Score = 30.4 bits (67), Expect = 4.8 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%) Frame = +1 Query: 262 SFVTIMDTSDYSAVPQQLKDQVNERYP---SAKRAVLRTGGDFPFLSRPDEVNLYLQLHL 432 S + I+D DY P L+ ER P SAK+ L L+ D + +L H+ Sbjct: 59 SHLLILDAIDYGLEPGTLRTYAGERIPAYLSAKKMSLHQNSFSEVLALAD-IRGHLPAHI 117 Query: 433 RRVGVEP 453 VG++P Sbjct: 118 ALVGLQP 124
>TF2B1_ARATH (P48512) Transcription initiation factor IIB-1 (General| transcription factor TFIIB-1) (AtTFIIB1) Length = 312 Score = 30.4 bits (67), Expect = 4.8 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Frame = +1 Query: 124 GPHEPFIADS-VDFVVGQVETLSREDLSSRLILNVNVASVGSLSLPDSFVTIMDTSDYSA 300 GP P +ADS + V+ + S + LSS L N S L +F TI S+ Sbjct: 61 GPTNPLLADSALTTVIAKPNGSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERLG 120 Query: 301 VPQQLKDQVNERY 339 + +KD+ NE Y Sbjct: 121 LVATIKDRANELY 133
>CLA4_YEAST (P48562) Serine/threonine-protein kinase CLA4 (EC 2.7.11.1)| Length = 842 Score = 30.0 bits (66), Expect = 6.2 Identities = 19/50 (38%), Positives = 28/50 (56%) Frame = +1 Query: 235 SVGSLSLPDSFVTIMDTSDYSAVPQQLKDQVNERYPSAKRAVLRTGGDFP 384 S+GS SLP T + TS S +P+ L++ N++YP + T G FP Sbjct: 311 SLGSGSLPP-INTKLPTSQ-SNIPRHLQNVPNQQYPKMRNGHSPTNGQFP 358
>PRR73_ORYSA (Q689G4) Two-component response regulator-like PRR73| (Pseudo-response regulator 73) (OsPRR73) Length = 767 Score = 30.0 bits (66), Expect = 6.2 Identities = 17/43 (39%), Positives = 24/43 (55%) Frame = +1 Query: 490 SSGSSNDHEDGNSFDDHTRDDGHRSSGRDGRKTERSESGPPNS 618 +SGS+ND+ED DD+ DD S G + R + SG +S Sbjct: 232 NSGSNNDNEDD---DDNDEDDDDLSVGHNARDGSDNGSGTQSS 271
>REC8_SCHPO (P36626) Meiotic recombination protein rec8 (Cohesin rec8)| Length = 561 Score = 30.0 bits (66), Expect = 6.2 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 1/90 (1%) Frame = +1 Query: 127 PHEPFIADSVDFVVGQVETLSREDLSSRLILNVNVASVGSLSLPDSFVTIMDTSDYSA-V 303 PH P + V+F+ + E L+S L SL L D FV +T + +A + Sbjct: 432 PHSPSMPSRVEFLPALESSQFHETLNSEL----------SLQLSDDFVLYKNTQEENAHL 481 Query: 304 PQQLKDQVNERYPSAKRAVLRTGGDFPFLS 393 ++ + Y AK A+ G F S Sbjct: 482 MLSMEKECANFYEYAKTAIYENNGRITFSS 511
>CWC21_NEUCR (Q7RYH7) Pre-mRNA-splicing factor cwc-21| Length = 344 Score = 29.6 bits (65), Expect = 8.1 Identities = 18/58 (31%), Positives = 22/58 (37%) Frame = +1 Query: 451 PRPDLVQGFTRGGSSGSSNDHEDGNSFDDHTRDDGHRSSGRDGRKTERSESGPPNSDG 624 P P G + G G D G F RD+G R + R+ R R PP G Sbjct: 174 PPPPAPSGPSGGNDRGGDRDRGRGRGFGRRDRDEG-RLNSRERRAPPRDWDRPPTPRG 230
>SEC73_SCHPO (O13817) Protein transport protein sec73| Length = 1082 Score = 29.6 bits (65), Expect = 8.1 Identities = 19/56 (33%), Positives = 24/56 (42%) Frame = +1 Query: 283 TSDYSAVPQQLKDQVNERYPSAKRAVLRTGGDFPFLSRPDEVNLYLQLHLRRVGVE 450 T S+VP+ D E Y S R + P L+ D V L LHL G+E Sbjct: 346 TKFLSSVPELTADDTAESYLSKLRETVPYSRMIPVLAEKDHVTLNKALHLCMSGME 401
>GALT2_HUMAN (Q10471) Polypeptide N-acetylgalactosaminyltransferase 2 (EC| 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase 2) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 2) (Polypeptide GalNAc transferase 2) (GalNAc-T2) (pp-GaNTase 2) Length = 571 Score = 29.6 bits (65), Expect = 8.1 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = +1 Query: 484 GGSSGSSNDHEDGNSFDDHTRDDGHRSSGRDGRKTERSESGPP 612 GG+ G + ED N D + D H S+G + K + E+ PP Sbjct: 33 GGAGGGAGRKEDWNEIDPIKKKDLHHSNGEE--KAQSMETLPP 73
>CO4A5_HUMAN (P29400) Collagen alpha-5(IV) chain precursor| Length = 1685 Score = 29.6 bits (65), Expect = 8.1 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +1 Query: 568 GRDGRKTERSESGPPNSDGLV 630 GRDG K ++ ++GPP GLV Sbjct: 325 GRDGEKGQKGDTGPPGPPGLV 345
>DHX9_BOVIN (Q28141) ATP-dependent RNA helicase A (EC 3.6.1.-) (Nuclear DNA| helicase II) (NDH II) (DEAH box protein 9) Length = 1287 Score = 29.6 bits (65), Expect = 8.1 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 6/86 (6%) Frame = +1 Query: 274 IMDTSDYSAVPQQLKDQVNERYPSAKRAVLRTGGDFPFLSRPDEVNLYLQLHLRRVGVEP 453 +++ + + QL D VNER + R + SRP + L + R G P Sbjct: 1108 VVEVTKQPGIISQL-DPVNERMLNTIRQI----------SRPSAAGINLMIGTTRYGDGP 1156 Query: 454 RP------DLVQGFTRGGSSGSSNDH 513 RP D G+ RGGSS S + Sbjct: 1157 RPPKMARYDNGSGYRRGGSSYSGGGY 1182 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.136 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,960,266 Number of Sequences: 219361 Number of extensions: 2090830 Number of successful extensions: 6764 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 6323 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6747 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6143359464 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
