ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6h03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF542188.1| Triticum aestivum cyc07 mRNA, complete cds 68 9e-10
2gb|AY290725.1| Triticum aestivum ribosomal protein S3a-like mRNA... 68 9e-10
3gb|AY849388.1| Vitis vinifera cultivar Riesling cyc07 mRNA, part... 52 5e-05
4gb|DQ164221.1| Nicotiana tabacum cyc07 mRNA, complete cds 48 8e-04
5gb|DQ268835.1| Solanum tuberosum clone 115A11 cyc07-like protein... 48 8e-04
6gb|DQ252490.1| Solanum tuberosum clone 059D09 cyc07-like mRNA, c... 48 8e-04
7ref|XM_464995.1| Oryza sativa (japonica cultivar-group), mRNA 40 0.20
8ref|XM_506775.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 0.20
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 0.20
10gb|AC146581.1| Oryza sativa (japonica cultivar-group) Nipponbare... 40 0.20
11gb|AC115687.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 0.20
12dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 0.20
13dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 0.20
14dbj|D26060.1|RICT151 Oryza sativa mRNA for cyc07, complete cds 40 0.20
15dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic D... 40 0.20
16dbj|AP004001.3| Oryza sativa (japonica cultivar-group) genomic D... 40 0.20
17dbj|AK104699.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 0.20
18dbj|AK104243.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 0.20
19dbj|AK099131.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 0.20
20dbj|AK069251.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 0.20
21dbj|AK059647.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 0.20
22gb|AF052503.1|AF052503 Oryza sativa S-phase-specific ribosomal p... 40 0.20
23gb|DQ241862.1| Solanum tuberosum clone 027B03 40S ribosomal prot... 40 0.20
24ref|XM_461721.1| Debaryomyces hansenii CBS767 hypothetical prote... 38 0.78
25emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS... 38 0.78
26gb|AC019153.13| Mus musculus chromosome 2 clone RP23-286D16, com... 38 0.78
27emb|BX004793.12| Mouse DNA sequence from clone RP23-188D9 on chr... 38 0.78
28dbj|AB029635.1| Daucus carota mRNA for cyc07, complete cds 38 0.78
29gb|AC150654.2| Oryza sativa (japonica cultivar-group) chromosome... 36 3.1
30gb|AC114012.5| Oryza sativa (japonica cultivar-group) chromosome... 36 3.1
31ref|XM_650261.1| Entamoeba histolytica HM-1:IMSS Rab GTPase acti... 36 3.1
32emb|BX649630.9| Zebrafish DNA sequence from clone DKEY-125B7 in ... 36 3.1
33dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 36 3.1
34emb|AJ132844.2|BBE132844 Broad bean wilt virus 2 genes encoding ... 36 3.1
35dbj|AK099761.1| Oryza sativa (japonica cultivar-group) cDNA clon... 36 3.1
36gb|AY109383.1| Zea mays CL7224_1 mRNA sequence 36 3.1
37gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 36 3.1
38emb|BX005111.4| Zebrafish DNA sequence from clone CH211-273E17 i... 36 3.1
39gb|DQ284471.1| Solanum tuberosum clone 110F03 RabGAP/TBC domain-... 36 3.1 
>gb|AF542188.1| Triticum aestivum cyc07 mRNA, complete cds
          Length = 820

 Score = 67.9 bits (34), Expect = 9e-10
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 1   gctgaggatgtgcaagggatgaatgtcctcacaa 34
           ||||||||||||||||||||||||||||||||||
Sbjct: 328 gctgaggatgtgcaagggatgaatgtcctcacaa 361
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>gb|AY290725.1| Triticum aestivum ribosomal protein S3a-like mRNA, partial sequence
          Length = 885

 Score = 67.9 bits (34), Expect = 9e-10
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 1   gctgaggatgtgcaagggatgaatgtcctcacaa 34
           ||||||||||||||||||||||||||||||||||
Sbjct: 330 gctgaggatgtgcaagggatgaatgtcctcacaa 363
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>gb|AY849388.1| Vitis vinifera cultivar Riesling cyc07 mRNA, partial cds
          Length = 879

 Score = 52.0 bits (26), Expect = 5e-05
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 1   gctgaggatgtgcaagggatgaatgtcctcacaa 34
           ||||||||||||||||| | ||||||||||||||
Sbjct: 196 gctgaggatgtgcaaggaaagaatgtcctcacaa 229
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>gb|DQ164221.1| Nicotiana tabacum cyc07 mRNA, complete cds
          Length = 786

 Score = 48.1 bits (24), Expect = 8e-04
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 7   gatgtgcaagggatgaatgtcctcacaa 34
           ||||||||||||| ||||||||||||||
Sbjct: 268 gatgtgcaagggaagaatgtcctcacaa 295
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>gb|DQ268835.1| Solanum tuberosum clone 115A11 cyc07-like protein mRNA, complete
           cds
          Length = 1020

 Score = 48.1 bits (24), Expect = 8e-04
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 7   gatgtgcaagggatgaatgtcctcacaa 34
           ||||||||||||| ||||||||||||||
Sbjct: 311 gatgtgcaagggaggaatgtcctcacaa 338
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>gb|DQ252490.1| Solanum tuberosum clone 059D09 cyc07-like mRNA, complete cds
          Length = 996

 Score = 48.1 bits (24), Expect = 8e-04
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 7   gatgtgcaagggatgaatgtcctcacaa 34
           ||||||||||||| ||||||||||||||
Sbjct: 289 gatgtgcaagggaggaatgtcctcacaa 316
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>ref|XM_464995.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1063

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 1   gctgaggatgtgcaagggatgaatgtcctcac 32
           ||||||||||| || |||| ||||||||||||
Sbjct: 297 gctgaggatgttcaggggaggaatgtcctcac 328
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>ref|XM_506775.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1115_D03.49
           mRNA
          Length = 1171

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 1   gctgaggatgtgcaagggatgaatgtcctcac 32
           ||||||||||| || |||| ||||||||||||
Sbjct: 333 gctgaggatgttcaggggaggaatgtcctcac 364
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 1       gctgaggatgtgcaagggatgaatgtcctcac 32
               ||||||||||||||||||| ||| || |||||
Sbjct: 5244467 gctgaggatgtgcaagggaagaacgtgctcac 5244498
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>gb|AC146581.1| Oryza sativa (japonica cultivar-group) Nipponbare strain chromosome 3
             clone OSJNBa0021H20, complete sequence
          Length = 133079

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 1     gctgaggatgtgcaagggatgaatgtcctcac 32
             ||||||||||||||||||| ||| || |||||
Sbjct: 67869 gctgaggatgtgcaagggaagaacgtgctcac 67900
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>gb|AC115687.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0091J11, from chromosome 3, complete sequence
          Length = 181163

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 1     gctgaggatgtgcaagggatgaatgtcctcac 32
             ||||||||||||||||||| ||| || |||||
Sbjct: 12051 gctgaggatgtgcaagggaagaacgtgctcac 12020
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 1       gctgaggatgtgcaagggatgaatgtcctcac 32
               ||||||||||||||||||| ||| || |||||
Sbjct: 5243682 gctgaggatgtgcaagggaagaacgtgctcac 5243713
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 1        gctgaggatgtgcaagggatgaatgtcctcac 32
                ||||||||||| || |||| ||||||||||||
Sbjct: 10823687 gctgaggatgttcaggggaggaatgtcctcac 10823656
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>dbj|D26060.1|RICT151 Oryza sativa mRNA for cyc07, complete cds
          Length = 1065

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 1   gctgaggatgtgcaagggatgaatgtcctcac 32
           ||||||||||||||||||| ||| || |||||
Sbjct: 357 gctgaggatgtgcaagggaagaacgtgctcac 388
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>dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1756_H07
          Length = 217205

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 1     gctgaggatgtgcaagggatgaatgtcctcac 32
             ||||||||||| || |||| ||||||||||||
Sbjct: 29886 gctgaggatgttcaggggaggaatgtcctcac 29855
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>dbj|AP004001.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1115_D03
          Length = 169378

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 1      gctgaggatgtgcaagggatgaatgtcctcac 32
              ||||||||||| || |||| ||||||||||||
Sbjct: 163168 gctgaggatgttcaggggaggaatgtcctcac 163137
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>dbj|AK104699.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-C03, full
           insert sequence
          Length = 942

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 1   gctgaggatgtgcaagggatgaatgtcctcac 32
           ||||||||||||||||||| ||| || |||||
Sbjct: 243 gctgaggatgtgcaagggaagaacgtgctcac 274
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>dbj|AK104243.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-D02, full
           insert sequence
          Length = 1032

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 1   gctgaggatgtgcaagggatgaatgtcctcac 32
           ||||||||||||||||||| ||| || |||||
Sbjct: 333 gctgaggatgtgcaagggaagaacgtgctcac 364
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>dbj|AK099131.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048M05, full
           insert sequence
          Length = 1063

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 1   gctgaggatgtgcaagggatgaatgtcctcac 32
           ||||||||||| || |||| ||||||||||||
Sbjct: 297 gctgaggatgttcaggggaggaatgtcctcac 328
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>dbj|AK069251.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013H23, full
           insert sequence
          Length = 1097

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 1   gctgaggatgtgcaagggatgaatgtcctcac 32
           ||||||||||||||||||| ||| || |||||
Sbjct: 334 gctgaggatgtgcaagggaagaacgtgctcac 365
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>dbj|AK059647.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-C03, full
           insert sequence
          Length = 1171

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 1   gctgaggatgtgcaagggatgaatgtcctcac 32
           ||||||||||| || |||| ||||||||||||
Sbjct: 333 gctgaggatgttcaggggaggaatgtcctcac 364
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>gb|AF052503.1|AF052503 Oryza sativa S-phase-specific ribosomal protein (RSPSP94) mRNA,
           complete cds
          Length = 1027

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 1   gctgaggatgtgcaagggatgaatgtcctcac 32
           ||||||||||| || |||| ||||||||||||
Sbjct: 294 gctgaggatgttcaggggaggaatgtcctcac 325
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>gb|DQ241862.1| Solanum tuberosum clone 027B03 40S ribosomal protein S3a-like mRNA,
           complete cds
          Length = 1118

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 7   gatgtgcaagggatgaatgtcctcacaa 34
           ||||||||||||| |||||| |||||||
Sbjct: 354 gatgtgcaagggaggaatgttctcacaa 381
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>ref|XM_461721.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0G04631g)
           partial mRNA
          Length = 948

 Score = 38.2 bits (19), Expect = 0.78
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 8   atgtgcaagggatgaatgt 26
           |||||||||||||||||||
Sbjct: 380 atgtgcaagggatgaatgt 398
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>emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces
              hansenii
          Length = 2051428

 Score = 38.2 bits (19), Expect = 0.78
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 8      atgtgcaagggatgaatgt 26
              |||||||||||||||||||
Sbjct: 355531 atgtgcaagggatgaatgt 355513
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>gb|AC019153.13| Mus musculus chromosome 2 clone RP23-286D16, complete sequence
          Length = 195068

 Score = 38.2 bits (19), Expect = 0.78
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 15    agggatgaatgtcctcaca 33
             |||||||||||||||||||
Sbjct: 43454 agggatgaatgtcctcaca 43472
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>emb|BX004793.12| Mouse DNA sequence from clone RP23-188D9 on chromosome 2, complete
              sequence
          Length = 161514

 Score = 38.2 bits (19), Expect = 0.78
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 15     agggatgaatgtcctcaca 33
              |||||||||||||||||||
Sbjct: 153614 agggatgaatgtcctcaca 153596
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>dbj|AB029635.1| Daucus carota mRNA for cyc07, complete cds
          Length = 1050

 Score = 38.2 bits (19), Expect = 0.78
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 4   gaggatgtgcaagggatgaatgt 26
           |||||||||||||||| ||||||
Sbjct: 286 gaggatgtgcaagggaagaatgt 308
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>gb|AC150654.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094L06,
              complete sequence
          Length = 189328

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 8      atgtgcaagggatgaatg 25
              ||||||||||||||||||
Sbjct: 174621 atgtgcaagggatgaatg 174638
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>gb|AC114012.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0079H11, complete sequence
          Length = 143925

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 8     atgtgcaagggatgaatg 25
             ||||||||||||||||||
Sbjct: 53941 atgtgcaagggatgaatg 53958
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>ref|XM_650261.1| Entamoeba histolytica HM-1:IMSS Rab GTPase activating protein,
            putative (31.t00032) partial mRNA
          Length = 1962

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 8    atgtgcaagggatgaatg 25
            ||||||||||||||||||
Sbjct: 1439 atgtgcaagggatgaatg 1456
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>emb|BX649630.9| Zebrafish DNA sequence from clone DKEY-125B7 in linkage group 21,
             complete sequence
          Length = 124133

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 8     atgtgcaagggatgaatg 25
             ||||||||||||||||||
Sbjct: 84378 atgtgcaagggatgaatg 84395
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                  
Query: 8        atgtgcaagggatgaatg 25
                ||||||||||||||||||
Sbjct: 16188621 atgtgcaagggatgaatg 16188638
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>emb|AJ132844.2|BBE132844 Broad bean wilt virus 2 genes encoding 119kDa protein, 104kDa
            protein, large coat protein, small coat protein
          Length = 3601

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 14   aagggatgaatgtcctca 31
            ||||||||||||||||||
Sbjct: 2944 aagggatgaatgtcctca 2927
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>dbj|AK099761.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093N23, full
           insert sequence
          Length = 2078

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 8   atgtgcaagggatgaatg 25
           ||||||||||||||||||
Sbjct: 972 atgtgcaagggatgaatg 989
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>gb|AY109383.1| Zea mays CL7224_1 mRNA sequence
          Length = 1236

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 30/34 (88%)
 Strand = Plus / Minus

                                             
Query: 1   gctgaggatgtgcaagggatgaatgtcctcacaa 34
           ||||| ||||||||||| | |||||| |||||||
Sbjct: 860 gctgaagatgtgcaaggcaggaatgtgctcacaa 827
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                  
Query: 8        atgtgcaagggatgaatg 25
                ||||||||||||||||||
Sbjct: 16278604 atgtgcaagggatgaatg 16278621
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>emb|BX005111.4| Zebrafish DNA sequence from clone CH211-273E17 in linkage group 21,
             complete sequence
          Length = 169747

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 8     atgtgcaagggatgaatg 25
             ||||||||||||||||||
Sbjct: 90605 atgtgcaagggatgaatg 90588
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>gb|DQ284471.1| Solanum tuberosum clone 110F03 RabGAP/TBC domain-containing
            protein-like mRNA, complete cds
          Length = 1830

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 8    atgtgcaagggatgaatg 25
            ||||||||||||||||||
Sbjct: 1116 atgtgcaagggatgaatg 1133


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 190,326
Number of Sequences: 3902068
Number of extensions: 190326
Number of successful extensions: 44123
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44023
Number of HSP's gapped (non-prelim): 100
length of query: 34
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 14
effective length of database: 17,155,003,908
effective search space: 240170054712
effective search space used: 240170054712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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