ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags6h02 |
|---|---|
| Clone Library Name | barley_pub |
>IF3C_ORYSA (Q94HF1) Eukaryotic translation initiation factor 3 subunit 12| (eIF-3 p25) (eIF3k) Length = 226 Score = 360 bits (923), Expect = 3e-99 Identities = 177/195 (90%), Positives = 187/195 (95%) Frame = +3 Query: 3 FVNEQVSSKTYNLXANLSLLRLYQFEPERLSVQIVARILIKALMAMPAPDFSLCLFLIPE 182 FVN+QVS++TYNL ANLSLLRLYQFEPERLSVQIV+RILIKALMAMP PDFSLCLFLIPE Sbjct: 32 FVNDQVSNQTYNLDANLSLLRLYQFEPERLSVQIVSRILIKALMAMPGPDFSLCLFLIPE 91 Query: 183 HVQMEEQFKTMIVLSHYLETGRFRQFWDEASKSRNTLDAVPGFEQAIQSYAIHVLSLTYQ 362 HVQMEEQFKT+IVLSHYLET RFRQFWDEASK+RN LD VPGFEQAIQSYAIHVLSLTYQ Sbjct: 92 HVQMEEQFKTLIVLSHYLETARFRQFWDEASKNRNILDVVPGFEQAIQSYAIHVLSLTYQ 151 Query: 363 KVPRPVLAEAINIEGLALDKFMEYHAANSGWVIENGTRSQLIVLPRNEFNHPELKKNTAD 542 KVPRPVLAEAINIEGLALDKF+E+H ANSGWVIE G RSQLIVLPRNEFNHPELKKNTA+ Sbjct: 152 KVPRPVLAEAINIEGLALDKFLEHHIANSGWVIEKGARSQLIVLPRNEFNHPELKKNTAE 211 Query: 543 TVPFEHVTRIFPILS 587 TVPFEHVTRIFP+LS Sbjct: 212 TVPFEHVTRIFPVLS 226
>IF3C_ARATH (Q9SZA3) Eukaryotic translation initiation factor 3 subunit 12| (eIF-3 p25) (eIF3k) Length = 226 Score = 286 bits (733), Expect = 3e-77 Identities = 138/189 (73%), Positives = 164/189 (86%) Frame = +3 Query: 18 VSSKTYNLXANLSLLRLYQFEPERLSVQIVARILIKALMAMPAPDFSLCLFLIPEHVQME 197 V+S+TY+L NL LLRLYQFEPER++ IVARIL+KALMAMP PDFSLCLFLIPE VQME Sbjct: 39 VTSQTYSLEVNLCLLRLYQFEPERMNTHIVARILVKALMAMPTPDFSLCLFLIPERVQME 98 Query: 198 EQFKTMIVLSHYLETGRFRQFWDEASKSRNTLDAVPGFEQAIQSYAIHVLSLTYQKVPRP 377 EQFK++IVLSHYLETGRF+QFWDEA+K+R+ L+AVPGFEQAIQ+YA H+LSL+YQKVPR Sbjct: 99 EQFKSLIVLSHYLETGRFQQFWDEAAKNRHILEAVPGFEQAIQAYASHLLSLSYQKVPRS 158 Query: 378 VLAEAINIEGLALDKFMEYHAANSGWVIENGTRSQLIVLPRNEFNHPELKKNTADTVPFE 557 VLAEA+N++G +LDKF+E NSGW++E S IVLP+NEFNHPELKKNT + VP E Sbjct: 159 VLAEAVNMDGASLDKFIEQQVTNSGWIVEKEGGS--IVLPQNEFNHPELKKNTGENVPLE 216 Query: 558 HVTRIFPIL 584 H+ RIFPIL Sbjct: 217 HIARIFPIL 225
>IF3C_BOVIN (Q3T0V3) Eukaryotic translation initiation factor 3 subunit 12| (eIF-3 p25) (eIF3k) Length = 218 Score = 108 bits (270), Expect = 1e-23 Identities = 59/190 (31%), Positives = 100/190 (52%) Frame = +3 Query: 3 FVNEQVSSKTYNLXANLSLLRLYQFEPERLSVQIVARILIKALMAMPAPDFSLCLFLIPE 182 +V Q Y+L ANL++L+LYQF P + A+IL+KAL +P DF+LC +I + Sbjct: 32 YVETQAKENAYDLEANLAVLKLYQFNPAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQ 91 Query: 183 HVQMEEQFKTMIVLSHYLETGRFRQFWDEASKSRNTLDAVPGFEQAIQSYAIHVLSLTYQ 362 Q E + ++ L LET F+ FW ++ + L+ + GFE +++ + HV+ +TYQ Sbjct: 92 AHQEERPIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSVRKFICHVVGITYQ 151 Query: 363 KVPRPVLAEAINIEGLALDKFMEYHAANSGWVIENGTRSQLIVLPRNEFNHPELKKNTAD 542 + R +LAE + G D ++ + GW + Q+ + + E P KN + Sbjct: 152 HIDRWLLAEML---GDLTDSQLKVWMSKYGWSADES--GQIFICSQEESIKP---KNIVE 203 Query: 543 TVPFEHVTRI 572 + F+ V+ I Sbjct: 204 KIDFDSVSSI 213
>IF3C_MOUSE (Q9DBZ5) Eukaryotic translation initiation factor 3 subunit 12| (eIF-3 p25) (eIF3k) Length = 218 Score = 108 bits (269), Expect = 2e-23 Identities = 59/190 (31%), Positives = 100/190 (52%) Frame = +3 Query: 3 FVNEQVSSKTYNLXANLSLLRLYQFEPERLSVQIVARILIKALMAMPAPDFSLCLFLIPE 182 +V Q Y+L ANL++L+LYQF P + A+IL+KAL +P DF+LC +I + Sbjct: 32 YVETQAKENAYDLEANLAVLKLYQFNPAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQ 91 Query: 183 HVQMEEQFKTMIVLSHYLETGRFRQFWDEASKSRNTLDAVPGFEQAIQSYAIHVLSLTYQ 362 Q E + ++ L LET F+ FW ++ + L+ + GFE +++ + HV+ +TYQ Sbjct: 92 AHQEERPIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSVRKFICHVVGITYQ 151 Query: 363 KVPRPVLAEAINIEGLALDKFMEYHAANSGWVIENGTRSQLIVLPRNEFNHPELKKNTAD 542 + R +LAE + G D ++ + GW + Q+ + + E P KN + Sbjct: 152 HIDRWLLAEML---GDLTDNQLKVWMSKYGWSADES--GQVFICSQEESIKP---KNIVE 203 Query: 543 TVPFEHVTRI 572 + F+ V+ I Sbjct: 204 KIDFDSVSSI 213
>IF3C_HUMAN (Q9UBQ5) Eukaryotic translation initiation factor 3 subunit 12| (eIF-3 p25) (eIF-3 p28) (eIF3k) (Muscle-specific gene M9 protein) (ARG134) (PLAC-24) Length = 218 Score = 108 bits (269), Expect = 2e-23 Identities = 59/190 (31%), Positives = 100/190 (52%) Frame = +3 Query: 3 FVNEQVSSKTYNLXANLSLLRLYQFEPERLSVQIVARILIKALMAMPAPDFSLCLFLIPE 182 +V Q Y+L ANL++L+LYQF P + A+IL+KAL +P DF+LC +I + Sbjct: 32 YVETQAKENAYDLEANLAVLKLYQFNPAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQ 91 Query: 183 HVQMEEQFKTMIVLSHYLETGRFRQFWDEASKSRNTLDAVPGFEQAIQSYAIHVLSLTYQ 362 Q E + ++ L LET F+ FW ++ + L+ + GFE +++ + HV+ +TYQ Sbjct: 92 AHQEERPIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSVRKFICHVVGITYQ 151 Query: 363 KVPRPVLAEAINIEGLALDKFMEYHAANSGWVIENGTRSQLIVLPRNEFNHPELKKNTAD 542 + R +LAE + G D ++ + GW + Q+ + + E P KN + Sbjct: 152 HIDRWLLAEML---GDLSDSQLKVWMSKYGWSADES--GQIFICSQEESIKP---KNIVE 203 Query: 543 TVPFEHVTRI 572 + F+ V+ I Sbjct: 204 KIDFDSVSSI 213
>IF3C_DROME (Q9W2D9) Probable eukaryotic translation initiation factor 3| subunit 12 (eIF-3 p25) (eIF3k) Length = 222 Score = 97.4 bits (241), Expect = 3e-20 Identities = 58/189 (30%), Positives = 97/189 (51%), Gaps = 2/189 (1%) Frame = +3 Query: 3 FVNEQVSSKTYNLXANLSLLRLYQFEPERLSVQIVARILIKALMAMPAPDFSLCLFLIPE 182 +V +Q + TY+L ANL++L+LYQF P L+ I IL+K+L ++P DF + L+ Sbjct: 36 YVQDQAKNNTYDLEANLAVLKLYQFNPHMLNFDITYTILLKSLTSLPHTDFVMAKCLLLP 95 Query: 183 HVQMEEQFKTMIVLSHYLETGRFRQFWDEASKSRNTLDAVPGFEQAIQSYAIHVLSLTYQ 362 +E +T+I L+ LE F FW A +RN + GF +I+ + HV+ T+Q Sbjct: 96 QQMKDENVQTIIDLADILERADFTLFWQRAEVNRNMFRHITGFHDSIRKFVSHVVGTTFQ 155 Query: 363 KVPRPVLAEAI-NIEGLALDKFMEYHAANSGWVIENGTRSQLIVLPRNEFNHPELK-KNT 536 + + +L E + IE L+ W+ NG ++Q L ++K KN Sbjct: 156 TIRKDLLKELLGGIEDSTLE----------SWIKRNGWKNQGQGLVIVAMQDDKIKTKNI 205 Query: 537 ADTVPFEHV 563 + + F++V Sbjct: 206 TEKIEFDNV 214
>IF3C_CAEEL (Q9XUP3) Probable eukaryotic translation initiation factor 3| subunit 12 (eIF-3 p25) (eIF3k) Length = 240 Score = 75.5 bits (184), Expect = 1e-13 Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 18/173 (10%) Frame = +3 Query: 6 VNEQVSSKTYNLXANLSLLRLYQFEPERLSVQIVARILIKALMAMPAPDFSLCLFLIPEH 185 V V+ Y+ L++L+LYQ PE+ +V ++L+K LM +P+ DF+L LI + Sbjct: 32 VQAMVNENKYDKDIVLTILKLYQLNPEKYDEAVVRQVLLKTLMVLPSSDFALAKCLIDTN 91 Query: 186 VQMEEQFKTMIVLSHYLETGRFRQFWD------EASKSRNTLDAVP-----------GFE 314 ++ + + L LE+ F FW + + + N VP GFE Sbjct: 92 RLGSQELRRIFDLGAVLESCNFAVFWKLVKGAYKPTTNPNEPFKVPGEVPKMIKPMVGFE 151 Query: 315 QAIQSYAIHVLSLTYQKVPRPVLAEAINIEGLALDKFMEYHAANSGW-VIENG 470 A++ YA V+S+T+QK+ + +L+ + G A DK + A + GW ENG Sbjct: 152 DAVKHYACRVISVTFQKIEKKMLSRLL---GGASDKEVTALAQSFGWEAKENG 201
>IF3C_CAEBR (Q61K76) Probable eukaryotic translation initiation factor 3| subunit 12 (eIF-3 p25) (eIF3k) Length = 240 Score = 74.7 bits (182), Expect = 2e-13 Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 18/173 (10%) Frame = +3 Query: 6 VNEQVSSKTYNLXANLSLLRLYQFEPERLSVQIVARILIKALMAMPAPDFSLCLFLIPEH 185 V V+ Y+ L++L+LYQ PER +V ++L+K LM +P+ DF+L LI + Sbjct: 32 VQAMVAENKYDKDIVLTILKLYQLNPERYDENVVRQVLLKTLMVLPSSDFALAKCLIDTN 91 Query: 186 VQMEEQFKTMIVLSHYLETGRFRQFWD------EASKSRNTLDAVP-----------GFE 314 ++ + + L LE+ F FW + + + N VP GFE Sbjct: 92 RIGSQELRRIFDLGAVLESCNFAVFWKLMKGTYKPTTNPNEPFKVPAEISKMIKPMAGFE 151 Query: 315 QAIQSYAIHVLSLTYQKVPRPVLAEAINIEGLALDKFMEYHAANSGW-VIENG 470 AI+ YA V+S+T+Q + + +L+ + G A DK + A GW ENG Sbjct: 152 DAIKHYACRVISVTFQNIEKKLLSSLL---GGASDKEVTALAKKFGWETKENG 201
>FAS2_YEAST (P19097) Fatty acid synthase alpha subunit (EC 2.3.1.86) [Includes:| Acyl carrier; 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) (Beta-ketoacyl reductase); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41) (Beta-ketoacyl synth Length = 1887 Score = 33.1 bits (74), Expect = 0.72 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%) Frame = +3 Query: 312 EQAIQSYAIHVLSLTYQKVPRPVLAEAINIEGL---ALDKFMEYHAANS 449 +Q++ S ++ + V R V++EAINI AL KFMEYH +N+ Sbjct: 410 KQSLLSLYFEIIHGVLKNVDREVVSEAINIMNRSNDALIKFMEYHISNT 458
>S4A7_MOUSE (Q8BTY2) Sodium bicarbonate cotransporter 3 (Solute carrier family| 4 member 7) Length = 1034 Score = 31.6 bits (70), Expect = 2.1 Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 9/96 (9%) Frame = -2 Query: 365 FLVCQGEHMNRIALDCLLETWYSIQCV-------TAL*CLVPKLAEP--TSLQVVRKDYH 213 F C+ H++ ++L + W S C+ ++L C + + E +L + Y Sbjct: 547 FKFCRDYHLSYLSLRTSIGLWTSFLCIVLVATDASSLVCYITRFTEEAFAALICIIFIYE 606 Query: 212 SLELLLHLHMFRN*EQA*AEVRSWHRHESLDQYAGY 105 +LE L HL E+ +++ H +LD+ Y Sbjct: 607 ALEKLFHL----------GEIYAFNMHNNLDELTSY 632
>YKX1_SCHPO (O14116) Hypothetical protein C328.01c in chromosome I| Length = 1234 Score = 30.8 bits (68), Expect = 3.6 Identities = 16/63 (25%), Positives = 31/63 (49%) Frame = +1 Query: 256 SFGTRHQRAVTHWMLYQVSSRQSKAMRFMCSP*HTRKFLGQFLQRPSTLRVLHWTSLWSI 435 SFG R + + Y ++S F C P +++FL F + L + WTS+ ++ Sbjct: 865 SFG-HFLRRLREYCYYAIASFMRLGQAFFCVPGLSKQFLTAFFSHAAGLSLHQWTSMVNV 923 Query: 436 MLQ 444 +++ Sbjct: 924 VIK 926
>S4A7_RAT (Q9R1N3) Sodium bicarbonate cotransporter 3 (Electroneutral sodium| bicarbonate cotransporter 1) (NBC-like protein) (Solute carrier family 4 member 7) Length = 1218 Score = 30.4 bits (67), Expect = 4.6 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 9/96 (9%) Frame = -2 Query: 365 FLVCQGEHMNRIALDCLLETWYSIQCV-------TAL*CLVPKLAEP--TSLQVVRKDYH 213 F C+ H++ ++L + W S C+ ++L C + + E +L + Y Sbjct: 683 FKFCRDYHLSYLSLRTSIGLWTSFLCIVLVATDASSLVCYITRFTEEAFAALICIIFIYE 742 Query: 212 SLELLLHLHMFRN*EQA*AEVRSWHRHESLDQYAGY 105 +LE L HL E+ +++ H +LD Y Sbjct: 743 ALEKLFHL----------GEIYAFNMHNNLDALTSY 768
>ILVB_SYNPX (Q7U5G1) Acetolactate synthase large subunit (EC 2.2.1.6) (AHAS)| (Acetohydroxy-acid synthase large subunit) (ALS) Length = 617 Score = 30.0 bits (66), Expect = 6.1 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 5/118 (4%) Frame = +3 Query: 207 KTMIVLSHYLETGRFRQ----FWDEASKSRNTLDAVPGFEQAIQSYAIHVLSLTYQKVPR 374 K +IV +H+ G RQ F+DE + + L+ +P F +S+ + + +T +++ Sbjct: 484 KVVIVNNHW--QGMVRQWQESFYDERYSASDMLNGMPDFIALARSFGVDGVKITDRELLH 541 Query: 375 PVLAEAINIEGLALDKFMEYHAANSGWVIENG-TRSQLIVLPRNEFNHPELKKNTADT 545 LA A+ + N ++ G + +Q++ LP +HPEL T T Sbjct: 542 RDLAAALQSPTPTMIDVHVRRGENCYPMVPPGKSNAQMVGLP----SHPELAMGTTRT 595 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,486,185 Number of Sequences: 219361 Number of extensions: 2016808 Number of successful extensions: 4601 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4471 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4598 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5995743495 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
