ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags6h02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470556.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 681 Score = 569 bits (287), Expect = e-159 Identities = 484/550 (88%) Strand = Plus / Plus Query: 28 aaacatataacctggntgcaaatctcagccttctacgcctttaccagtttgagccagaaa 87 ||||||||||| ||| ||||||||| || ||||| || || |||||||| || ||||||| Sbjct: 119 aaacatataacttggatgcaaatcttagtcttcttcgtctgtaccagttcgaaccagaaa 178 Query: 88 ggttgagcgtgcaaattgtagcccgcatattgatcaaggctctcatggcgatgccagctc 147 ||||||| ||||| |||||| | ||||||||||| |||||||||||||| ||||||| | Sbjct: 179 ggttgagtgtgcagattgtatctcgcatattgattaaggctctcatggcaatgccaggcc 238 Query: 148 cggacttcagcctatgcttgttcttaattcctgaacatgtgcaaatggaggagcagttca 207 ||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||| Sbjct: 239 cggacttcagcctatgcttattcttaattccagagcatgtgcaaatggaggaacagttca 298 Query: 208 agactatgatagtcctttctcactacctggagactggtaggttccgccagttttgggacg 267 |||| ||||||| || ||||||||||||||||||| ||||||||| || |||||||| | Sbjct: 299 agacgttgatagttctctctcactacctggagactgctaggttccgtcaattttgggatg 358 Query: 268 aggcatcaaagagccgtaacacactggatgctgtaccaggtttcgagcaggcaatccaaa 327 |||| || |||| ||| |||| | |||||| ||| |||||||| ||||||||||||||| Sbjct: 359 aggcgtcgaagaaccgcaacatattggatgttgttccaggttttgagcaggcaatccaat 418 Query: 328 gctatgcgattcatgtgctctccttgacataccagaaagttcctaggccagttcttgcag 387 ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 419 cctatgcgatacatgtgctctccttgacataccagaaagttcctaggcctgttcttgcgg 478 Query: 388 aggccatcaacattgagggtcttgcattggacaagtttatggagtatcatgctgcaaact 447 ||||||||||||||||||||||||||||||||||||| ||||| | ||| |||||||| Sbjct: 479 aggccatcaacattgagggtcttgcattggacaagttcctggagcaccatattgcaaact 538 Query: 448 caggatgggtcattgagaatggtacacgctcccaactgattgtccttccgcgcaacgagt 507 | || ||||| || ||||| ||| |||| || || |||||||||||||| |||||||||| Sbjct: 539 ccggttgggtgatcgagaagggtgcacgatctcagctgattgtccttccacgcaacgagt 598 Query: 508 tcaatcaccctgaactcaagaagaacacagccgacaccgttccgttcgagcacgtgaccc 567 ||||||||||||| ||||||||||||||||| || || |||||||||||||| || || | Sbjct: 599 tcaatcaccctgagctcaagaagaacacagctgaaactgttccgttcgagcatgtaactc 658 Query: 568 gcatattccc 577 |||||||||| Sbjct: 659 gcatattccc 668
>dbj|AK073293.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024B21, full insert sequence Length = 1046 Score = 569 bits (287), Expect = e-159 Identities = 484/550 (88%) Strand = Plus / Plus Query: 28 aaacatataacctggntgcaaatctcagccttctacgcctttaccagtttgagccagaaa 87 ||||||||||| ||| ||||||||| || ||||| || || |||||||| || ||||||| Sbjct: 254 aaacatataacttggatgcaaatcttagtcttcttcgtctgtaccagttcgaaccagaaa 313 Query: 88 ggttgagcgtgcaaattgtagcccgcatattgatcaaggctctcatggcgatgccagctc 147 ||||||| ||||| |||||| | ||||||||||| |||||||||||||| ||||||| | Sbjct: 314 ggttgagtgtgcagattgtatctcgcatattgattaaggctctcatggcaatgccaggcc 373 Query: 148 cggacttcagcctatgcttgttcttaattcctgaacatgtgcaaatggaggagcagttca 207 ||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||| Sbjct: 374 cggacttcagcctatgcttattcttaattccagagcatgtgcaaatggaggaacagttca 433 Query: 208 agactatgatagtcctttctcactacctggagactggtaggttccgccagttttgggacg 267 |||| ||||||| || ||||||||||||||||||| ||||||||| || |||||||| | Sbjct: 434 agacgttgatagttctctctcactacctggagactgctaggttccgtcaattttgggatg 493 Query: 268 aggcatcaaagagccgtaacacactggatgctgtaccaggtttcgagcaggcaatccaaa 327 |||| || |||| ||| |||| | |||||| ||| |||||||| ||||||||||||||| Sbjct: 494 aggcgtcgaagaaccgcaacatattggatgttgttccaggttttgagcaggcaatccaat 553 Query: 328 gctatgcgattcatgtgctctccttgacataccagaaagttcctaggccagttcttgcag 387 ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 554 cctatgcgatacatgtgctctccttgacataccagaaagttcctaggcctgttcttgcgg 613 Query: 388 aggccatcaacattgagggtcttgcattggacaagtttatggagtatcatgctgcaaact 447 ||||||||||||||||||||||||||||||||||||| ||||| | ||| |||||||| Sbjct: 614 aggccatcaacattgagggtcttgcattggacaagttcctggagcaccatattgcaaact 673 Query: 448 caggatgggtcattgagaatggtacacgctcccaactgattgtccttccgcgcaacgagt 507 | || ||||| || ||||| ||| |||| || || |||||||||||||| |||||||||| Sbjct: 674 ccggttgggtgatcgagaagggtgcacgatctcagctgattgtccttccacgcaacgagt 733 Query: 508 tcaatcaccctgaactcaagaagaacacagccgacaccgttccgttcgagcacgtgaccc 567 ||||||||||||| ||||||||||||||||| || || |||||||||||||| || || | Sbjct: 734 tcaatcaccctgagctcaagaagaacacagctgaaactgttccgttcgagcatgtaactc 793 Query: 568 gcatattccc 577 |||||||||| Sbjct: 794 gcatattccc 803
>dbj|AK120235.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043M05, full insert sequence Length = 954 Score = 561 bits (283), Expect = e-156 Identities = 483/550 (87%) Strand = Plus / Plus Query: 28 aaacatataacctggntgcaaatctcagccttctacgcctttaccagtttgagccagaaa 87 ||||||||||| ||| ||||||||| || ||||| || || |||||||| || ||||||| Sbjct: 254 aaacatataacttggatgcaaatcttagtcttcttcgtctgtaccagttcgaaccagaaa 313 Query: 88 ggttgagcgtgcaaattgtagcccgcatattgatcaaggctctcatggcgatgccagctc 147 ||||||| ||||| |||||| | ||||||||||| |||||||||||||| ||||||| | Sbjct: 314 ggttgagtgtgcagattgtatctcgcatattgattaaggctctcatggcaatgccaggcc 373 Query: 148 cggacttcagcctatgcttgttcttaattcctgaacatgtgcaaatggaggagcagttca 207 ||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||| Sbjct: 374 cggacttcagcctatgcttattcttaattccagagcatgtgcaaatggaggaacagttca 433 Query: 208 agactatgatagtcctttctcactacctggagactggtaggttccgccagttttgggacg 267 |||| ||||||| || ||||||||||||||||||| ||||||||| || |||||||| | Sbjct: 434 agacgttgatagttctctctcactacctggagactgctaggttccgtcaattttgggatg 493 Query: 268 aggcatcaaagagccgtaacacactggatgctgtaccaggtttcgagcaggcaatccaaa 327 |||| || |||| ||| |||| | |||||| ||| |||||||| ||||||||||||||| Sbjct: 494 aggcgtcgaagaaccgcaacatattggatgttgttccaggttttgagcaggcaatccaat 553 Query: 328 gctatgcgattcatgtgctctccttgacataccagaaagttcctaggccagttcttgcag 387 ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 554 cctatgcgatacatgtgctctccttgacataccagaaagttcctaggcctgttcttgcgg 613 Query: 388 aggccatcaacattgagggtcttgcattggacaagtttatggagtatcatgctgcaaact 447 ||||||||||||||||||||||||||||||||||||| ||||| | || |||||||| Sbjct: 614 aggccatcaacattgagggtcttgcattggacaagttcctggagcaccacattgcaaact 673 Query: 448 caggatgggtcattgagaatggtacacgctcccaactgattgtccttccgcgcaacgagt 507 | || ||||| || ||||| ||| |||| || || |||||||||||||| |||||||||| Sbjct: 674 ccggttgggtgatcgagaagggtgcacgatctcagctgattgtccttccacgcaacgagt 733 Query: 508 tcaatcaccctgaactcaagaagaacacagccgacaccgttccgttcgagcacgtgaccc 567 ||||||||||||| ||||||||||||||||| || || |||||||||||||| || || | Sbjct: 734 tcaatcaccctgagctcaagaagaacacagctgaaactgttccgttcgagcatgtaactc 793 Query: 568 gcatattccc 577 |||||||||| Sbjct: 794 gcatattccc 803
>gb|AY107129.1| Zea mays PCO086222 mRNA sequence Length = 965 Score = 446 bits (225), Expect = e-122 Identities = 485/572 (84%) Strand = Plus / Plus Query: 6 gtcaacgagcaggtttcttctaaaacatataacctggntgcaaatctcagccttctacgc 65 ||||||||||| ||| | ||| ||||||||||| ||| |||||||||||||||||| ||| Sbjct: 197 gtcaacgagcaagttgcgtctcaaacatataacttggatgcaaatctcagccttcttcgc 256 Query: 66 ctttaccagtttgagccagaaaggttgagcgtgcaaattgtagcccgcatattgatcaag 125 || |||||||||||||||| |||| ||||| | || ||||| |||| |||| |||||||| Sbjct: 257 ctgtaccagtttgagccaggaaggatgagcatacatattgtggcccacatactgatcaag 316 Query: 126 gctctcatggcgatgccagctccggacttcagcctatgcttgttcttaattcctgaacat 185 ||||||||||| ||||| || || |||||||| || ||||| |||||||||||||||||| Sbjct: 317 gctctcatggcaatgccggcccctgacttcagtctttgcttattcttaattcctgaacat 376 Query: 186 gtgcaaatggaggagcagttcaagactatgatagtcctttctcactacctggagactggt 245 ||||||||||| ||||| |||||| | ||||||| ||||||||||| || ||||||| | Sbjct: 377 gtgcaaatggaagagcaattcaaggcattgatagttctttctcactatctagagactgct 436 Query: 246 aggttccgccagttttgggacgaggcatcaaagagccgtaacacactggatgctgtacca 305 |||||| | ||||||||||| || ||| |||| | ||| ||| | |||| || || ||| Sbjct: 437 aggttcaggcagttttgggatgacgcagcaaacaaccgccacatattggaagcagttcca 496 Query: 306 ggtttcgagcaggcaatccaaagctatgcgattcatgtgctctccttgacataccagaaa 365 ||||| ||||||||||||||| |||||| |||||||| || |||||||||||||||||| Sbjct: 497 ggttttgagcaggcaatccaatcctatgcaattcatgtactttccttgacataccagaaa 556 Query: 366 gttcctaggccagttcttgcagaggccatcaacattgagggtcttgcattggacaagttt 425 ||||| |||| ||||||||||||| ||||||||||| ||||| || |||||||||||| Sbjct: 557 gttccaaggcatattcttgcagaggcaatcaacattgaaggtctcgctttggacaagttt 616 Query: 426 atggagtatcatgctgcaaactcaggatgggtcattgagaatggtacacgctcccaactg 485 | ||||| |||||||| |||||||| ||||| |||||||| ||| | || ||| || Sbjct: 617 cttgagtaccatgctgcgaactcaggttgggtaattgagaagggtgggcagtctcaagtg 676 Query: 486 attgtccttccgcgcaacgagttcaatcaccctgaactcaagaagaacacagccgacacc 545 ||||| ||||| ||||| |||||||||||||| | ||||||||||||||||| || ||| Sbjct: 677 attgttcttccacgcaatgagttcaatcacccccagctcaagaagaacacagctgatacc 736 Query: 546 gttccgttcgagcacgtgacccgcatattccc 577 ||||| || |||||| | || ||||||||||| Sbjct: 737 gttccatttgagcacctaacacgcatattccc 768
>gb|AY104081.1| Zea mays PCO086223 mRNA sequence Length = 1097 Score = 414 bits (209), Expect = e-112 Identities = 481/572 (84%) Strand = Plus / Plus Query: 6 gtcaacgagcaggtttcttctaaaacatataacctggntgcaaatctcagccttctacgc 65 ||||| |||||||| || ||| | ||||||||| ||| |||||||||||||||||| ||| Sbjct: 252 gtcaatgagcaggtctcatctcagacatataacttggatgcaaatctcagccttcttcgc 311 Query: 66 ctttaccagtttgagccagaaaggttgagcgtgcaaattgtagcccgcatattgatcaag 125 | ||||||||||||||||||||| ||||| | || ||||| |||| |||| |||| ||| Sbjct: 312 ttgtaccagtttgagccagaaaggatgagcatacagattgtggcccacatactgattaag 371 Query: 126 gctctcatggcgatgccagctccggacttcagcctatgcttgttcttaattcctgaacat 185 ||||||||||| |||||||| || |||||||| | ||||| |||||||| ||||||||| Sbjct: 372 gctctcatggcaatgccagcccctgacttcagtttgtgcttattcttaatccctgaacat 431 Query: 186 gtgcaaatggaggagcagttcaagactatgatagtcctttctcactacctggagactggt 245 ||||||||||||||||| |||||| ||||||| |||||||||||||| ||||||| | Sbjct: 432 gtgcaaatggaggagcaattcaaggtattgatagttctttctcactacctagagactgct 491 Query: 246 aggttccgccagttttgggacgaggcatcaaagagccgtaacacactggatgctgtacca 305 |||||| | || |||||||| || ||| |||||| ||| ||| | ||| || || ||| Sbjct: 492 aggttcagtcaattttgggatgaagcagcaaagaaccgccacatatcggaagcagtgcca 551 Query: 306 ggtttcgagcaggcaatccaaagctatgcgattcatgtgctctccttgacataccagaaa 365 |||||||| || ||||||||| ||||||||||||||| || |||||||||||||||||| Sbjct: 552 ggtttcgaacaagcaatccaatcctatgcgattcatgtactttccttgacataccagaaa 611 Query: 366 gttcctaggccagttcttgcagaggccatcaacattgagggtcttgcattggacaagttt 425 ||||| ||||| |||||| |||||| |||||||| || ||||| || |||||||||||| Sbjct: 612 gttccaaggcctattcttgtagaggcaatcaacatcgaaggtctcgcgttggacaagttt 671 Query: 426 atggagtatcatgctgcaaactcaggatgggtcattgagaatggtacacgctcccaactg 485 | ||||| ||||| || |||||||| ||||| |||||||| ||| | || ||| || Sbjct: 672 cttgagtaccatgccgcgaactcaggttgggtgattgagaagggtgggcagtctcaagtg 731 Query: 486 attgtccttccgcgcaacgagttcaatcaccctgaactcaagaagaacacagccgacacc 545 ||||| |||||||| || |||||||||||||| || |||||||||||||||||||| | | Sbjct: 732 attgttcttccgcgtaatgagttcaatcacccagagctcaagaagaacacagccgatatc 791 Query: 546 gttccgttcgagcacgtgacccgcatattccc 577 ||||||| || ||||| || ||||||||||| Sbjct: 792 cttccgtttgaacacgtaacacgcatattccc 823
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 194 bits (98), Expect = 2e-46 Identities = 167/190 (87%) Strand = Plus / Minus Query: 388 aggccatcaacattgagggtcttgcattggacaagtttatggagtatcatgctgcaaact 447 ||||||||||||||||||||||||||||||||||||| ||||| | ||| |||||||| Sbjct: 4321589 aggccatcaacattgagggtcttgcattggacaagttcctggagcaccatattgcaaact 4321530 Query: 448 caggatgggtcattgagaatggtacacgctcccaactgattgtccttccgcgcaacgagt 507 | || ||||| || ||||| ||| |||| || || |||||||||||||| |||||||||| Sbjct: 4321529 ccggttgggtgatcgagaagggtgcacgatctcagctgattgtccttccacgcaacgagt 4321470 Query: 508 tcaatcaccctgaactcaagaagaacacagccgacaccgttccgttcgagcacgtgaccc 567 ||||||||||||| ||||||||||||||||| || || |||||||||||||| || || | Sbjct: 4321469 tcaatcaccctgagctcaagaagaacacagctgaaactgttccgttcgagcatgtaactc 4321410 Query: 568 gcatattccc 577 |||||||||| Sbjct: 4321409 gcatattccc 4321400 Score = 125 bits (63), Expect = 2e-25 Identities = 81/87 (93%) Strand = Plus / Minus Query: 304 caggtttcgagcaggcaatccaaagctatgcgattcatgtgctctccttgacataccaga 363 ||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct: 4321930 caggttttgagcaggcaatccaatcctatgcgatacatgtgctctccttgacataccaga 4321871 Query: 364 aagttcctaggccagttcttgcagagg 390 ||||||||||||| |||||||| |||| Sbjct: 4321870 aagttcctaggcctgttcttgcggagg 4321844 Score = 81.8 bits (41), Expect = 3e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 124 aggctctcatggcgatgccagctccggacttcagcctatgcttgttcttaattcctgaac 183 ||||||||||||| ||||||| |||||||||||||||||||| ||||||||||| || | Sbjct: 4323152 aggctctcatggcaatgccaggcccggacttcagcctatgcttattcttaattccagagc 4323093 Query: 184 atgtg 188 ||||| Sbjct: 4323092 atgtg 4323088 Score = 63.9 bits (32), Expect = 6e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 188 gcaaatggaggagcagttcaagactatgatagtcctttctcactacctggag 239 |||||||||||| ||||||||||| ||||||| || ||||||||||||||| Sbjct: 4322666 gcaaatggaggaacagttcaagacgttgatagttctctctcactacctggag 4322615 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 72 cagtttgagccagaaaggttgagcgtgcaaattgtagcccgcatattgatcaagg 126 ||||| || |||||||||||||| ||||| |||||| | ||||||||||| |||| Sbjct: 4323301 cagttcgaaccagaaaggttgagtgtgcagattgtatctcgcatattgattaagg 4323247 Score = 40.1 bits (20), Expect = 8.7 Identities = 40/47 (85%) Strand = Plus / Minus Query: 28 aaacatataacctggntgcaaatctcagccttctacgcctttaccag 74 ||||||||||| ||| ||||||||| || ||||| || || |||||| Sbjct: 4323431 aaacatataacttggatgcaaatcttagtcttcttcgtctgtaccag 4323385
>gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G08, from Chromosome 3, complete sequence Length = 122052 Score = 194 bits (98), Expect = 2e-46 Identities = 167/190 (87%) Strand = Plus / Plus Query: 388 aggccatcaacattgagggtcttgcattggacaagtttatggagtatcatgctgcaaact 447 ||||||||||||||||||||||||||||||||||||| ||||| | ||| |||||||| Sbjct: 104908 aggccatcaacattgagggtcttgcattggacaagttcctggagcaccatattgcaaact 104967 Query: 448 caggatgggtcattgagaatggtacacgctcccaactgattgtccttccgcgcaacgagt 507 | || ||||| || ||||| ||| |||| || || |||||||||||||| |||||||||| Sbjct: 104968 ccggttgggtgatcgagaagggtgcacgatctcagctgattgtccttccacgcaacgagt 105027 Query: 508 tcaatcaccctgaactcaagaagaacacagccgacaccgttccgttcgagcacgtgaccc 567 ||||||||||||| ||||||||||||||||| || || |||||||||||||| || || | Sbjct: 105028 tcaatcaccctgagctcaagaagaacacagctgaaactgttccgttcgagcatgtaactc 105087 Query: 568 gcatattccc 577 |||||||||| Sbjct: 105088 gcatattccc 105097 Score = 125 bits (63), Expect = 2e-25 Identities = 81/87 (93%) Strand = Plus / Plus Query: 304 caggtttcgagcaggcaatccaaagctatgcgattcatgtgctctccttgacataccaga 363 ||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct: 104567 caggttttgagcaggcaatccaatcctatgcgatacatgtgctctccttgacataccaga 104626 Query: 364 aagttcctaggccagttcttgcagagg 390 ||||||||||||| |||||||| |||| Sbjct: 104627 aagttcctaggcctgttcttgcggagg 104653 Score = 81.8 bits (41), Expect = 3e-12 Identities = 59/65 (90%) Strand = Plus / Plus Query: 124 aggctctcatggcgatgccagctccggacttcagcctatgcttgttcttaattcctgaac 183 ||||||||||||| ||||||| |||||||||||||||||||| ||||||||||| || | Sbjct: 103345 aggctctcatggcaatgccaggcccggacttcagcctatgcttattcttaattccagagc 103404 Query: 184 atgtg 188 ||||| Sbjct: 103405 atgtg 103409 Score = 63.9 bits (32), Expect = 6e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 188 gcaaatggaggagcagttcaagactatgatagtcctttctcactacctggag 239 |||||||||||| ||||||||||| ||||||| || ||||||||||||||| Sbjct: 103831 gcaaatggaggaacagttcaagacgttgatagttctctctcactacctggag 103882 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 72 cagtttgagccagaaaggttgagcgtgcaaattgtagcccgcatattgatcaagg 126 ||||| || |||||||||||||| ||||| |||||| | ||||||||||| |||| Sbjct: 103196 cagttcgaaccagaaaggttgagtgtgcagattgtatctcgcatattgattaagg 103250 Score = 40.1 bits (20), Expect = 8.7 Identities = 40/47 (85%) Strand = Plus / Plus Query: 28 aaacatataacctggntgcaaatctcagccttctacgcctttaccag 74 ||||||||||| ||| ||||||||| || ||||| || || |||||| Sbjct: 103066 aaacatataacttggatgcaaatcttagtcttcttcgtctgtaccag 103112
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 194 bits (98), Expect = 2e-46 Identities = 167/190 (87%) Strand = Plus / Minus Query: 388 aggccatcaacattgagggtcttgcattggacaagtttatggagtatcatgctgcaaact 447 ||||||||||||||||||||||||||||||||||||| ||||| | ||| |||||||| Sbjct: 4321704 aggccatcaacattgagggtcttgcattggacaagttcctggagcaccatattgcaaact 4321645 Query: 448 caggatgggtcattgagaatggtacacgctcccaactgattgtccttccgcgcaacgagt 507 | || ||||| || ||||| ||| |||| || || |||||||||||||| |||||||||| Sbjct: 4321644 ccggttgggtgatcgagaagggtgcacgatctcagctgattgtccttccacgcaacgagt 4321585 Query: 508 tcaatcaccctgaactcaagaagaacacagccgacaccgttccgttcgagcacgtgaccc 567 ||||||||||||| ||||||||||||||||| || || |||||||||||||| || || | Sbjct: 4321584 tcaatcaccctgagctcaagaagaacacagctgaaactgttccgttcgagcatgtaactc 4321525 Query: 568 gcatattccc 577 |||||||||| Sbjct: 4321524 gcatattccc 4321515 Score = 125 bits (63), Expect = 2e-25 Identities = 81/87 (93%) Strand = Plus / Minus Query: 304 caggtttcgagcaggcaatccaaagctatgcgattcatgtgctctccttgacataccaga 363 ||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct: 4322045 caggttttgagcaggcaatccaatcctatgcgatacatgtgctctccttgacataccaga 4321986 Query: 364 aagttcctaggccagttcttgcagagg 390 ||||||||||||| |||||||| |||| Sbjct: 4321985 aagttcctaggcctgttcttgcggagg 4321959 Score = 81.8 bits (41), Expect = 3e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 124 aggctctcatggcgatgccagctccggacttcagcctatgcttgttcttaattcctgaac 183 ||||||||||||| ||||||| |||||||||||||||||||| ||||||||||| || | Sbjct: 4323267 aggctctcatggcaatgccaggcccggacttcagcctatgcttattcttaattccagagc 4323208 Query: 184 atgtg 188 ||||| Sbjct: 4323207 atgtg 4323203 Score = 63.9 bits (32), Expect = 6e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 188 gcaaatggaggagcagttcaagactatgatagtcctttctcactacctggag 239 |||||||||||| ||||||||||| ||||||| || ||||||||||||||| Sbjct: 4322781 gcaaatggaggaacagttcaagacgttgatagttctctctcactacctggag 4322730 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 72 cagtttgagccagaaaggttgagcgtgcaaattgtagcccgcatattgatcaagg 126 ||||| || |||||||||||||| ||||| |||||| | ||||||||||| |||| Sbjct: 4323416 cagttcgaaccagaaaggttgagtgtgcagattgtatctcgcatattgattaagg 4323362 Score = 40.1 bits (20), Expect = 8.7 Identities = 40/47 (85%) Strand = Plus / Minus Query: 28 aaacatataacctggntgcaaatctcagccttctacgcctttaccag 74 ||||||||||| ||| ||||||||| || ||||| || || |||||| Sbjct: 4323546 aaacatataacttggatgcaaatcttagtcttcttcgtctgtaccag 4323500
>ref|NM_119479.2| Arabidopsis thaliana EIF3K AT4G33250 (EIF3K) mRNA, complete cds Length = 936 Score = 89.7 bits (45), Expect = 1e-14 Identities = 120/145 (82%) Strand = Plus / Plus Query: 121 tcaaggctctcatggcgatgccagctccggacttcagcctatgcttgttcttaattcctg 180 |||||||||| ||||| |||||| |||| ||||||||||| ||| | ||||| ||||| | Sbjct: 302 tcaaggctcttatggctatgccaactccagacttcagcctttgcctcttcttgattcccg 361 Query: 181 aacatgtgcaaatggaggagcagttcaagactatgatagtcctttctcactacctggaga 240 || |||||||||||||||||||||||| | | || || || || |||||||| |||| Sbjct: 362 aaagagtgcaaatggaggagcagttcaagtcactaattgttctatcacactaccttgaga 421 Query: 241 ctggtaggttccgccagttttggga 265 |||| ||||||| ||||| ||||| Sbjct: 422 ctgggaggttccaacagttctggga 446
>gb|AY091164.1| Arabidopsis thaliana unknown protein (At4g33250) mRNA, complete cds Length = 712 Score = 89.7 bits (45), Expect = 1e-14 Identities = 120/145 (82%) Strand = Plus / Plus Query: 121 tcaaggctctcatggcgatgccagctccggacttcagcctatgcttgttcttaattcctg 180 |||||||||| ||||| |||||| |||| ||||||||||| ||| | ||||| ||||| | Sbjct: 218 tcaaggctcttatggctatgccaactccagacttcagcctttgcctcttcttgattcccg 277 Query: 181 aacatgtgcaaatggaggagcagttcaagactatgatagtcctttctcactacctggaga 240 || |||||||||||||||||||||||| | | || || || || |||||||| |||| Sbjct: 278 aaagagtgcaaatggaggagcagttcaagtcactaattgttctatcacactaccttgaga 337 Query: 241 ctggtaggttccgccagttttggga 265 |||| ||||||| ||||| ||||| Sbjct: 338 ctgggaggttccaacagttctggga 362
>gb|AY050928.1| Arabidopsis thaliana unknown protein (At4g33250) mRNA, complete cds Length = 906 Score = 89.7 bits (45), Expect = 1e-14 Identities = 120/145 (82%) Strand = Plus / Plus Query: 121 tcaaggctctcatggcgatgccagctccggacttcagcctatgcttgttcttaattcctg 180 |||||||||| ||||| |||||| |||| ||||||||||| ||| | ||||| ||||| | Sbjct: 302 tcaaggctcttatggctatgccaactccagacttcagcctttgcctcttcttgattcccg 361 Query: 181 aacatgtgcaaatggaggagcagttcaagactatgatagtcctttctcactacctggaga 240 || |||||||||||||||||||||||| | | || || || || |||||||| |||| Sbjct: 362 aaagagtgcaaatggaggagcagttcaagtcactaattgttctatcacactaccttgaga 421 Query: 241 ctggtaggttccgccagttttggga 265 |||| ||||||| ||||| ||||| Sbjct: 422 ctgggaggttccaacagttctggga 446
>gb|AY091670.1| Arabidopsis thaliana AT4g33250/F17M5_10 mRNA, complete cds Length = 681 Score = 89.7 bits (45), Expect = 1e-14 Identities = 120/145 (82%) Strand = Plus / Plus Query: 121 tcaaggctctcatggcgatgccagctccggacttcagcctatgcttgttcttaattcctg 180 |||||||||| ||||| |||||| |||| ||||||||||| ||| | ||||| ||||| | Sbjct: 218 tcaaggctcttatggctatgccaactccagacttcagcctttgcctcttcttgattcccg 277 Query: 181 aacatgtgcaaatggaggagcagttcaagactatgatagtcctttctcactacctggaga 240 || |||||||||||||||||||||||| | | || || || || |||||||| |||| Sbjct: 278 aaagagtgcaaatggaggagcagttcaagtcactaattgttctatcacactaccttgaga 337 Query: 241 ctggtaggttccgccagttttggga 265 |||| ||||||| ||||| ||||| Sbjct: 338 ctgggaggttccaacagttctggga 362
>gb|AY037191.1| Arabidopsis thaliana AT4g33250/F17M5_10 mRNA, complete cds Length = 917 Score = 89.7 bits (45), Expect = 1e-14 Identities = 120/145 (82%) Strand = Plus / Plus Query: 121 tcaaggctctcatggcgatgccagctccggacttcagcctatgcttgttcttaattcctg 180 |||||||||| ||||| |||||| |||| ||||||||||| ||| | ||||| ||||| | Sbjct: 302 tcaaggctcttatggctatgccaactccagacttcagcctttgcctcttcttgattcccg 361 Query: 181 aacatgtgcaaatggaggagcagttcaagactatgatagtcctttctcactacctggaga 240 || |||||||||||||||||||||||| | | || || || || |||||||| |||| Sbjct: 362 aaagagtgcaaatggaggagcagttcaagtcactaattgttctatcacactaccttgaga 421 Query: 241 ctggtaggttccgccagttttggga 265 |||| ||||||| ||||| ||||| Sbjct: 422 ctgggaggttccaacagttctggga 446
>gb|AF291713.1|AF291713 Arabidopsis thaliana initiation factor 3k mRNA, complete cds Length = 911 Score = 89.7 bits (45), Expect = 1e-14 Identities = 120/145 (82%) Strand = Plus / Plus Query: 121 tcaaggctctcatggcgatgccagctccggacttcagcctatgcttgttcttaattcctg 180 |||||||||| ||||| |||||| |||| ||||||||||| ||| | ||||| ||||| | Sbjct: 277 tcaaggctcttatggctatgccaactccagacttcagcctttgcctcttcttgattcccg 336 Query: 181 aacatgtgcaaatggaggagcagttcaagactatgatagtcctttctcactacctggaga 240 || |||||||||||||||||||||||| | | || || || || |||||||| |||| Sbjct: 337 aaagagtgcaaatggaggagcagttcaagtcactaattgttctatcacactaccttgaga 396 Query: 241 ctggtaggttccgccagttttggga 265 |||| ||||||| ||||| ||||| Sbjct: 397 ctgggaggttccaacagttctggga 421
>emb|BX827634.1|CNS0A3Q9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS87ZG07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 569 Score = 81.8 bits (41), Expect = 3e-12 Identities = 116/141 (82%) Strand = Plus / Plus Query: 125 ggctctcatggcgatgccagctccggacttcagcctatgcttgttcttaattcctgaaca 184 |||||| ||||| |||||| |||| ||||||||||| ||| | ||||| ||||| ||| Sbjct: 1 ggctcttatggctatgccaactccagacttcagcctttgcctcttcttgattcccgaaag 60 Query: 185 tgtgcaaatggaggagcagttcaagactatgatagtcctttctcactacctggagactgg 244 |||||||||||||||||||||||| | | || || || || |||||||| |||||||| Sbjct: 61 agtgcaaatggaggagcagttcaagtcactaattgttctatcacactaccttgagactgg 120 Query: 245 taggttccgccagttttggga 265 ||||||| ||||| ||||| Sbjct: 121 gaggttccaacagttctggga 141
>gb|BT013178.1| Lycopersicon esculentum clone 134254F, mRNA sequence Length = 1056 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 357 taccagaaagttcctaggccagttcttgcagaggccatcaacattgagggtcttgcattg 416 |||||||| ||||| ||| | ||||||| ||||| ||||||||||||||| || ||||| Sbjct: 566 taccagaaggttccaaggaccattcttgcggaggctatcaacattgagggtgtttcattg 625 Query: 417 gacaagtt 424 || ||||| Sbjct: 626 gataagtt 633 Score = 46.1 bits (23), Expect = 0.14 Identities = 64/78 (82%) Strand = Plus / Plus Query: 5 tgtcaacgagcaggtttcttctaaaacatataacctggntgcaaatctcagccttctacg 64 ||||||||| ||||||| ||| ||||||| || |||| |||||| || |||| || || Sbjct: 214 tgtcaacgaacaggttttgtctcaaacatacaatctggatgcaaacctttgcctgctccg 273 Query: 65 cctttaccagtttgagcc 82 ||||| ||||||||||| Sbjct: 274 tctttatcagtttgagcc 291
>emb|AL161583.2|ATCHRIV79 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 79 Length = 199536 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 121 tcaaggctctcatggcgatgccagctccggacttcagcctatgcttgttcttaattcc 178 |||||||||| ||||| |||||| |||| ||||||||||| ||| | ||||| ||||| Sbjct: 68307 tcaaggctcttatggctatgccaactccagacttcagcctttgcctcttcttgattcc 68250 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 188 gcaaatggaggagcagttcaag 209 |||||||||||||||||||||| Sbjct: 68010 gcaaatggaggagcagttcaag 67989
>emb|AL035678.1|ATF17M5 Arabidopsis thaliana DNA chromosome 4, BAC clone F17M5 (ESSA project) Length = 96475 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 121 tcaaggctctcatggcgatgccagctccggacttcagcctatgcttgttcttaattcc 178 |||||||||| ||||| |||||| |||| ||||||||||| ||| | ||||| ||||| Sbjct: 3528 tcaaggctcttatggctatgccaactccagacttcagcctttgcctcttcttgattcc 3471 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 188 gcaaatggaggagcagttcaag 209 |||||||||||||||||||||| Sbjct: 3231 gcaaatggaggagcagttcaag 3210
>gb|DQ099079.1| Arachis stenosperma clone AS1RN11E05 microsatellite sequence Length = 297 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 45 gcaaatctcagccttctacgcctttaccagtttga 79 ||||||||| ||||||| ||||| ||||||||||| Sbjct: 232 gcaaatctctgccttcttcgcctctaccagtttga 266
>emb|AL627444.10| Mouse DNA sequence from clone RP23-307A1 on chromosome 11 Contains the 5' end of the Gabrb2 gene for subunit beta 2 gamma-aminobutyric acid (GABA-A) receptor, complete sequence Length = 176814 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 atgcttgttcttaattcctga 181 ||||||||||||||||||||| Sbjct: 34819 atgcttgttcttaattcctga 34799
>gb|AC158676.12| Mus musculus 6 BAC RP23-146N13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 204560 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 374 gccagttcttgcagaggccat 394 ||||||||||||||||||||| Sbjct: 112534 gccagttcttgcagaggccat 112554
>gb|AC007942.16|AC007942 Mus musculus chromosome , clone CT7-56G4, complete sequence Length = 122955 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 374 gccagttcttgcagaggccat 394 ||||||||||||||||||||| Sbjct: 77901 gccagttcttgcagaggccat 77921
>gb|AC164373.4| Mus musculus chromosome 1, clone RP23-36O22, complete sequence Length = 171278 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 194 ggaggagcagttcaagactat 214 ||||||||||||||||||||| Sbjct: 91717 ggaggagcagttcaagactat 91737
>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome Length = 2519802 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 398 cattgagggtcttgcattgga 418 ||||||||||||||||||||| Sbjct: 6497 cattgagggtcttgcattgga 6517
>emb|X71905.1|NSMRNA N.sylvestris mRNA Length = 1604 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 168 ttcttaattcctgaacatgtgcaaa 192 ||||||||||| ||||||||||||| Sbjct: 373 ttcttaattccagaacatgtgcaaa 349
>ref|XM_638454.1| Dictyostelium discoideum hypothetical protein (DDB0202474), partial mRNA Length = 690 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 tcttctaaaacatataacct 40 |||||||||||||||||||| Sbjct: 554 tcttctaaaacatataacct 535
>gb|AC163402.5| Mus musculus chromosome 7, clone RP23-290H21, complete sequence Length = 240582 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 tttctcactacctggagact 242 |||||||||||||||||||| Sbjct: 2859 tttctcactacctggagact 2878
>gb|AC160335.6| Mus musculus BAC clone RP23-38N19 from chromosome 15, complete sequence Length = 212090 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 cgtaacacactggatgctgt 301 |||||||||||||||||||| Sbjct: 57416 cgtaacacactggatgctgt 57397
>gb|AC108948.3| Mus musculus BAC clone RP23-183P12 from 15, complete sequence Length = 196923 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 cgtaacacactggatgctgt 301 |||||||||||||||||||| Sbjct: 174486 cgtaacacactggatgctgt 174467
>gb|AC010048.5| Drosophila melanogaster 3L BAC RP98-5B23 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 175316 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 577 ccatcttgagctgattcagc 596 |||||||||||||||||||| Sbjct: 95540 ccatcttgagctgattcagc 95559
>gb|AC115080.13| Mus musculus chromosome 7, clone RP24-464M7, complete sequence Length = 158221 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 tttctcactacctggagact 242 |||||||||||||||||||| Sbjct: 38700 tttctcactacctggagact 38681
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 615 atcaagcacttttgtctgtc 634 |||||||||||||||||||| Sbjct: 399680 atcaagcacttttgtctgtc 399661
>gb|AC025761.5|AC025761 Homo sapiens chromosome 5 clone CTB-109C23, complete sequence Length = 112944 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 caggtttcttctaaaacata 34 |||||||||||||||||||| Sbjct: 96811 caggtttcttctaaaacata 96792
>gb|AC115598.2| Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence Length = 154071 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 tcttctaaaacatataacct 40 |||||||||||||||||||| Sbjct: 43950 tcttctaaaacatataacct 43969
>gb|AC125455.3| Mus musculus BAC clone RP24-170L2 from chromosome 15, complete sequence Length = 145059 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 cgtaacacactggatgctgt 301 |||||||||||||||||||| Sbjct: 43486 cgtaacacactggatgctgt 43505
>dbj|AP004851.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1359_D06 Length = 146805 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 615 atcaagcacttttgtctgtc 634 |||||||||||||||||||| Sbjct: 128464 atcaagcacttttgtctgtc 128445
>dbj|AB049726.1| Anguilla japonica eUT mRNA for gill urea transporter, complete cds Length = 1846 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 gcattggacaagtttatgga 430 |||||||||||||||||||| Sbjct: 787 gcattggacaagtttatgga 806
>gb|AE003535.3| Drosophila melanogaster chromosome 3L, section 50 of 83 of the complete sequence Length = 278708 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 577 ccatcttgagctgattcagc 596 |||||||||||||||||||| Sbjct: 260434 ccatcttgagctgattcagc 260453
>gb|AC121109.5| Mus musculus chromosome 7, clone RP24-445I8, complete sequence Length = 167819 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 tttctcactacctggagact 242 |||||||||||||||||||| Sbjct: 117847 tttctcactacctggagact 117828 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,809,785 Number of Sequences: 3902068 Number of extensions: 4809785 Number of successful extensions: 93320 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93147 Number of HSP's gapped (non-prelim): 168 length of query: 639 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 616 effective length of database: 17,143,297,704 effective search space: 10560271385664 effective search space used: 10560271385664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
