ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6g18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK103621.1| Oryza sativa (japonica cultivar-group) cDNA clon... 478 e-131
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 428 e-117
3dbj|AP003431.2| Oryza sativa (japonica cultivar-group) genomic D... 428 e-117
4ref|NM_190209.1| Oryza sativa (japonica cultivar-group), predic... 416 e-113
5gb|BT013717.1| Lycopersicon esculentum clone 132563F, mRNA sequence 50 0.008
6ref|NM_105436.2| Arabidopsis thaliana unknown protein AT1G67680 ... 46 0.12
7emb|BX815577.1|CNS0AATK Arabidopsis thaliana Full-length cDNA Co... 46 0.12
8gb|BT005156.1| Arabidopsis thaliana clone U20370 unknown protein... 46 0.12
9gb|BT003859.1| Arabidopsis thaliana clone RAFL14-88-B17 (R20370)... 46 0.12
10gb|AC084571.1|CBRG39J22 Caenorhabditis briggsae cosmid G39J22, c... 44 0.47
11ref|NM_105433.2| Arabidopsis thaliana unknown protein AT1G67650 ... 42 1.9
12gb|AC129593.4| Mus musculus BAC clone RP24-142E6 from chromosome... 42 1.9
13ref|XM_383509.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 42 1.9
14gb|AC139300.4| Mus musculus BAC clone RP23-258L8 from chromosome... 42 1.9
15gb|AC122919.3| Mus musculus BAC clone RP23-30C12 from 10, comple... 42 1.9
16gb|AC116580.4| Mus musculus BAC clone RP23-293A11 from 18, compl... 42 1.9
17gb|AC063968.5| Genomic sequence for Mus musculus, clone RP23-105... 42 1.9
18dbj|AK147716.1| Mus musculus melanocyte cDNA, RIKEN full-length ... 42 1.9
19gb|AC150899.3| Mus musculus BAC clone RP23-179F8 from chromosome... 42 1.9
20emb|BX815260.1|CNS0ADZP Arabidopsis thaliana Full-length cDNA Co... 42 1.9
21gb|BT003874.1| Arabidopsis thaliana clone RAFL16-03-M21 (R50209)... 42 1.9
22gb|AC154329.3| Mus musculus BAC clone RP23-266K11 from chromosom... 42 1.9
23gb|BC056557.1| Danio rerio TWIST neighbor, mRNA (cDNA clone IMAG... 40 7.4
24gb|AC151913.1| Pan troglodytes chromosome X clone RP43-057B02 ma... 40 7.4
25gb|AC151912.1| Pan troglodytes chromosome X clone PTB-093M21 map... 40 7.4
26gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 7.4
27gb|AY648783.1| Danio rerio twistnb-like mRNA, complete cds 40 7.4
28gb|AC108909.15| Mus musculus chromosome 3, clone RP24-245I16, co... 40 7.4
29gb|BC064328.1| Danio rerio cDNA clone IMAGE:7000662 40 7.4
30gb|AC150978.15| Medicago truncatula clone mth2-66m17, complete s... 40 7.4
31gb|AC125473.12| Medicago truncatula clone mth2-8j13, complete se... 40 7.4
32gb|AC126014.6| Medicago truncatula clone mth2-18j5, complete seq... 40 7.4
33emb|Z97196.1|HS448E20 Human DNA sequence from clone RP3-448E20 o... 40 7.4
34emb|AL121999.18|HSJ543J13 Human DNA sequence from clone RP4-543J... 40 7.4
35gb|AC108933.3| Homo sapiens BAC clone RP11-392K14 from 4, comple... 40 7.4
36gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome 40 7.4
37emb|BX322798.6| Zebrafish DNA sequence from clone CH211-231F6 in... 40 7.4
38gb|AC011454.6|AC011454 Homo sapiens chromosome 19 clone CTC-347E... 40 7.4
39ref|NM_001007153.1| Danio rerio TWIST neighbor (twistnb), mRNA 40 7.4
40gb|AC008113.4|AC008113 Genomic sequence for Arabidopsis thaliana... 40 7.4
41gb|AC015600.8| Homo sapiens chromosome 11, clone RP11-45C5, comp... 40 7.4
42emb|BX842668.3| Mouse DNA sequence from clone RP23-161M5 on chro... 40 7.4
43emb|AL929449.14| Mouse DNA sequence from clone RP23-279D23 on ch... 40 7.4
44gb|AC145978.3| Gallus gallus BAC clone CH261-10K7 from chromosom... 40 7.4
45gb|AC116729.14| Mus musculus chromosome 3, clone RP23-346I1, com... 40 7.4 
>dbj|AK103621.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133M12, full
            insert sequence
          Length = 2269

 Score =  478 bits (241), Expect = e-131
 Identities = 456/530 (86%)
 Strand = Plus / Plus

                                                                        
Query: 14   caaggcaaaaagaagccctgtattctgctcgtgtacttttgctcctccatgcaaataaaa 73
            |||||||||||||||| |||||||||||   ||| ||||| |||||||| || || ||||
Sbjct: 1024 caaggcaaaaagaagctctgtattctgcatatgttcttttactcctccacgcgaacaaaa 1083

                                                                        
Query: 74   tcgatcaggcacaagagttggtcactgggctgcttggtatgtttcgagacggtgtattcc 133
            | ||||||||||| ||||| |||| ||| || |||||||||||||  ||| |   |||||
Sbjct: 1084 ttgatcaggcacatgagtttgtcagtggactacttggtatgtttcaggacagcacattcc 1143

                                                                        
Query: 134  ctgttttacttcaagctgcagttcatgtgagagnnnnnnnggtcccgaaagctgaagaag 193
            ||||||| |||||||||||||||||||||||||       ||| | ||||||||||||||
Sbjct: 1144 ctgttttgcttcaagctgcagttcatgtgagagaaaagaaggtgcagaaagctgaagaag 1203

                                                                        
Query: 194  ttctaagtcgctatgctgagaagcatcctgataattctaaaggagtcctccttgcacttg 253
            |||| || |  |||||||||||||||||||| ||||||||||||||||||||| | ||||
Sbjct: 1204 ttcttagccagtatgctgagaagcatcctgagaattctaaaggagtcctcctttcgcttg 1263

                                                                        
Query: 254  cccagattgctgccaatgccaaccattttcaggttgctgctgattcactgtcaaagatat 313
            | ||||| ||||||| |||||| ||||||||| |||||||||||||| |||| || ||| 
Sbjct: 1264 ctcagatcgctgccagtgccaatcattttcagattgctgctgattcattgtctaaaatag 1323

                                                                        
Query: 314  cagacatccagcacatgcctgctacagttgctacacttgtagctctaaaagagcgtctaa 373
              |||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||  
Sbjct: 1324 ttgacatccagcacatgcctgctacagtcgctacactagtagctcttaaagagcgccttg 1383

                                                                        
Query: 374  atgactctaatgccgcagcttctgtgcttgattctgctatcaagtggtggaaaaatgcca 433
             |||||||||||  ||  ||||||||||||||||||||||| |||||||||| ||| |||
Sbjct: 1384 gtgactctaatggtgcttcttctgtgcttgattctgctatccagtggtggaagaattcca 1443

                                                                        
Query: 434  tgacagaagataacaagttggatgtgttcatgcgggaggctgctacatttaagctcaacc 493
            |||| || |||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct: 1444 tgactgaggataacaaattagaggtgttcatgcgggaggctgctacatttaagctcaacc 1503

                                                              
Query: 494  atgggcgtgatgaagaggcctgtcaactgtacgaggaacttgtgaagagc 543
            |||||||||| ||||||||||| ||| |||| ||||| ||||| ||||||
Sbjct: 1504 atgggcgtgacgaagaggcctgccaattgtatgaggatcttgttaagagc 1553
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  428 bits (216), Expect = e-117
 Identities = 401/465 (86%)
 Strand = Plus / Plus

                                                                            
Query: 79       caggcacaagagttggtcactgggctgcttggtatgtttcgagacggtgtattccctgtt 138
                |||||||| ||||| |||| ||| || |||||||||||||  ||| |   ||||||||||
Sbjct: 38646680 caggcacatgagtttgtcagtggactacttggtatgtttcaggacagcacattccctgtt 38646739

                                                                            
Query: 139      ttacttcaagctgcagttcatgtgagagnnnnnnnggtcccgaaagctgaagaagttcta 198
                || |||||||||||||||||||||||||       ||| | |||||||||||||||||| 
Sbjct: 38646740 ttgcttcaagctgcagttcatgtgagagaaaagaaggtgcagaaagctgaagaagttctt 38646799

                                                                            
Query: 199      agtcgctatgctgagaagcatcctgataattctaaaggagtcctccttgcacttgcccag 258
                || |  |||||||||||||||||||| ||||||||||||||||||||| | ||||| |||
Sbjct: 38646800 agccagtatgctgagaagcatcctgagaattctaaaggagtcctcctttcgcttgctcag 38646859

                                                                            
Query: 259      attgctgccaatgccaaccattttcaggttgctgctgattcactgtcaaagatatcagac 318
                || ||||||| |||||| ||||||||| |||||||||||||| |||| || |||   |||
Sbjct: 38646860 atcgctgccagtgccaatcattttcagattgctgctgattcattgtctaaaatagttgac 38646919

                                                                            
Query: 319      atccagcacatgcctgctacagttgctacacttgtagctctaaaagagcgtctaaatgac 378
                ||||||||||||||||||||||| |||||||| |||||||| |||||||| ||   ||||
Sbjct: 38646920 atccagcacatgcctgctacagtcgctacactagtagctcttaaagagcgccttggtgac 38646979

                                                                            
Query: 379      tctaatgccgcagcttctgtgcttgattctgctatcaagtggtggaaaaatgccatgaca 438
                |||||||  ||  ||||||||||||||||||||||| |||||||||| ||| ||||||| 
Sbjct: 38646980 tctaatggtgcttcttctgtgcttgattctgctatccagtggtggaagaattccatgact 38647039

                                                                            
Query: 439      gaagataacaagttggatgtgttcatgcgggaggctgctacatttaagctcaaccatggg 498
                || |||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38647040 gaggataacaaattagaggtgttcatgcgggaggctgctacatttaagctcaaccatggg 38647099

                                                             
Query: 499      cgtgatgaagaggcctgtcaactgtacgaggaacttgtgaagagc 543
                ||||| ||||||||||| ||| |||| ||||| ||||| ||||||
Sbjct: 38647100 cgtgacgaagaggcctgccaattgtatgaggatcttgttaagagc 38647144



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 59/69 (85%)
 Strand = Plus / Plus

                                                                            
Query: 14       caaggcaaaaagaagccctgtattctgctcgtgtacttttgctcctccatgcaaataaaa 73
                |||||||||||||||| |||||||||||   ||| ||||| |||||||| || || ||||
Sbjct: 38645905 caaggcaaaaagaagctctgtattctgcatatgttcttttactcctccacgcgaacaaaa 38645964

                         
Query: 74       tcgatcagg 82
                | |||||||
Sbjct: 38645965 ttgatcagg 38645973
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>dbj|AP003431.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1099D03
          Length = 191022

 Score =  428 bits (216), Expect = e-117
 Identities = 401/465 (86%)
 Strand = Plus / Plus

                                                                          
Query: 79     caggcacaagagttggtcactgggctgcttggtatgtttcgagacggtgtattccctgtt 138
              |||||||| ||||| |||| ||| || |||||||||||||  ||| |   ||||||||||
Sbjct: 104653 caggcacatgagtttgtcagtggactacttggtatgtttcaggacagcacattccctgtt 104712

                                                                          
Query: 139    ttacttcaagctgcagttcatgtgagagnnnnnnnggtcccgaaagctgaagaagttcta 198
              || |||||||||||||||||||||||||       ||| | |||||||||||||||||| 
Sbjct: 104713 ttgcttcaagctgcagttcatgtgagagaaaagaaggtgcagaaagctgaagaagttctt 104772

                                                                          
Query: 199    agtcgctatgctgagaagcatcctgataattctaaaggagtcctccttgcacttgcccag 258
              || |  |||||||||||||||||||| ||||||||||||||||||||| | ||||| |||
Sbjct: 104773 agccagtatgctgagaagcatcctgagaattctaaaggagtcctcctttcgcttgctcag 104832

                                                                          
Query: 259    attgctgccaatgccaaccattttcaggttgctgctgattcactgtcaaagatatcagac 318
              || ||||||| |||||| ||||||||| |||||||||||||| |||| || |||   |||
Sbjct: 104833 atcgctgccagtgccaatcattttcagattgctgctgattcattgtctaaaatagttgac 104892

                                                                          
Query: 319    atccagcacatgcctgctacagttgctacacttgtagctctaaaagagcgtctaaatgac 378
              ||||||||||||||||||||||| |||||||| |||||||| |||||||| ||   ||||
Sbjct: 104893 atccagcacatgcctgctacagtcgctacactagtagctcttaaagagcgccttggtgac 104952

                                                                          
Query: 379    tctaatgccgcagcttctgtgcttgattctgctatcaagtggtggaaaaatgccatgaca 438
              |||||||  ||  ||||||||||||||||||||||| |||||||||| ||| ||||||| 
Sbjct: 104953 tctaatggtgcttcttctgtgcttgattctgctatccagtggtggaagaattccatgact 105012

                                                                          
Query: 439    gaagataacaagttggatgtgttcatgcgggaggctgctacatttaagctcaaccatggg 498
              || |||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105013 gaggataacaaattagaggtgttcatgcgggaggctgctacatttaagctcaaccatggg 105072

                                                           
Query: 499    cgtgatgaagaggcctgtcaactgtacgaggaacttgtgaagagc 543
              ||||| ||||||||||| ||| |||| ||||| ||||| ||||||
Sbjct: 105073 cgtgacgaagaggcctgccaattgtatgaggatcttgttaagagc 105117



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 59/69 (85%)
 Strand = Plus / Plus

                                                                          
Query: 14     caaggcaaaaagaagccctgtattctgctcgtgtacttttgctcctccatgcaaataaaa 73
              |||||||||||||||| |||||||||||   ||| ||||| |||||||| || || ||||
Sbjct: 103878 caaggcaaaaagaagctctgtattctgcatatgttcttttactcctccacgcgaacaaaa 103937

                       
Query: 74     tcgatcagg 82
              | |||||||
Sbjct: 103938 ttgatcagg 103946
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>ref|NM_190209.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2052

 Score =  416 bits (210), Expect = e-113
 Identities = 362/415 (87%)
 Strand = Plus / Plus

                                                                        
Query: 129  attccctgttttacttcaagctgcagttcatgtgagagnnnnnnnggtcccgaaagctga 188
            |||||||||||| |||||||||||||||||||||||||       ||| | |||||||||
Sbjct: 1134 attccctgttttgcttcaagctgcagttcatgtgagagaaaagaaggtgcagaaagctga 1193

                                                                        
Query: 189  agaagttctaagtcgctatgctgagaagcatcctgataattctaaaggagtcctccttgc 248
            ||||||||| || |  |||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 1194 agaagttcttagccagtatgctgagaagcatcctgagaattctaaaggagtcctcctttc 1253

                                                                        
Query: 249  acttgcccagattgctgccaatgccaaccattttcaggttgctgctgattcactgtcaaa 308
             ||||| ||||| ||||||| |||||| ||||||||| |||||||||||||| |||| ||
Sbjct: 1254 gcttgctcagatcgctgccagtgccaatcattttcagattgctgctgattcattgtctaa 1313

                                                                        
Query: 309  gatatcagacatccagcacatgcctgctacagttgctacacttgtagctctaaaagagcg 368
             |||   |||||||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct: 1314 aatagttgacatccagcacatgcctgctacagtcgctacactagtagctcttaaagagcg 1373

                                                                        
Query: 369  tctaaatgactctaatgccgcagcttctgtgcttgattctgctatcaagtggtggaaaaa 428
             ||   |||||||||||  ||  ||||||||||||||||||||||| |||||||||| ||
Sbjct: 1374 ccttggtgactctaatggtgcttcttctgtgcttgattctgctatccagtggtggaagaa 1433

                                                                        
Query: 429  tgccatgacagaagataacaagttggatgtgttcatgcgggaggctgctacatttaagct 488
            | ||||||| || |||||||| || || ||||||||||||||||||||||||||||||||
Sbjct: 1434 ttccatgactgaggataacaaattagaggtgttcatgcgggaggctgctacatttaagct 1493

                                                                   
Query: 489  caaccatgggcgtgatgaagaggcctgtcaactgtacgaggaacttgtgaagagc 543
            ||||||||||||||| ||||||||||| ||| |||| ||||| ||||| ||||||
Sbjct: 1494 caaccatgggcgtgacgaagaggcctgccaattgtatgaggatcttgttaagagc 1548



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                        
Query: 14   caaggcaaaaagaagccctgtattctgctcgtgtacttttgctcctccatgcaaataaaa 73
            |||||||||||||||| |||||||||||   ||| ||||| |||||||| || || ||||
Sbjct: 977  caaggcaaaaagaagctctgtattctgcatatgttcttttactcctccacgcgaacaaaa 1036

                    
Query: 74   tcgatcag 81
            | ||||||
Sbjct: 1037 ttgatcag 1044
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>gb|BT013717.1| Lycopersicon esculentum clone 132563F, mRNA sequence
          Length = 1924

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                             
Query: 395  ctgtgcttgattctgctatcaagtggtggaaaaatgccatgacagaaga 443
            ||||| ||||||| || ||||||||||||  |||||||||||| |||||
Sbjct: 1115 ctgtgtttgattccgcaatcaagtggtggtcaaatgccatgactgaaga 1163
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>ref|NM_105436.2| Arabidopsis thaliana unknown protein AT1G67680 mRNA, complete cds
          Length = 2258

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 55   ctcctccatgcaaataaaatcgatcaggcac 85
            ||||||||||||||||| || ||||||||||
Sbjct: 1072 ctcctccatgcaaataagatggatcaggcac 1102
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>emb|BX815577.1|CNS0AATK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS72ZF09 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2132

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 55   ctcctccatgcaaataaaatcgatcaggcac 85
            ||||||||||||||||| || ||||||||||
Sbjct: 1051 ctcctccatgcaaataagatggatcaggcac 1081
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>gb|BT005156.1| Arabidopsis thaliana clone U20370 unknown protein (At1g67680) mRNA,
            complete cds
          Length = 2026

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 55   ctcctccatgcaaataaaatcgatcaggcac 85
            ||||||||||||||||| || ||||||||||
Sbjct: 1015 ctcctccatgcaaataagatggatcaggcac 1045
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>gb|BT003859.1| Arabidopsis thaliana clone RAFL14-88-B17 (R20370) unknown protein
            (At1g67680) mRNA, complete cds
          Length = 2281

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 55   ctcctccatgcaaataaaatcgatcaggcac 85
            ||||||||||||||||| || ||||||||||
Sbjct: 1077 ctcctccatgcaaataagatggatcaggcac 1107
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>gb|AC084571.1|CBRG39J22 Caenorhabditis briggsae cosmid G39J22, complete sequence
          Length = 41637

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 296   attcactgtcaaagatatcaga 317
             ||||||||||||||||||||||
Sbjct: 15394 attcactgtcaaagatatcaga 15415
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>ref|NM_105433.2| Arabidopsis thaliana unknown protein AT1G67650 mRNA, complete cds
          Length = 2129

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 58   ctccatgcaaataaaatcgatcaggcacaagag 90
            |||||||||||||| || |||||||||| ||||
Sbjct: 979  ctccatgcaaataagatggatcaggcacgagag 1011
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>gb|AC129593.4| Mus musculus BAC clone RP24-142E6 from chromosome 7, complete sequence
          Length = 210291

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 416    agtggtggaaaaatgccatga 436
              |||||||||||||||||||||
Sbjct: 107231 agtggtggaaaaatgccatga 107211
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>ref|XM_383509.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03333.1)
           partial mRNA
          Length = 1095

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 258 gattgctgccaatgccaacca 278
           |||||||||||||||||||||
Sbjct: 144 gattgctgccaatgccaacca 164
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>gb|AC139300.4| Mus musculus BAC clone RP23-258L8 from chromosome 18, complete sequence
          Length = 209617

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 216   gcatcctgataattctaaaggagtc 240
             |||||||||||||| ||||||||||
Sbjct: 46264 gcatcctgataattgtaaaggagtc 46240
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>gb|AC122919.3| Mus musculus BAC clone RP23-30C12 from 10, complete sequence
          Length = 221920

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 209   ctgagaagcatcctgataatt 229
             |||||||||||||||||||||
Sbjct: 49619 ctgagaagcatcctgataatt 49639
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>gb|AC116580.4| Mus musculus BAC clone RP23-293A11 from 18, complete sequence
          Length = 197810

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 216   gcatcctgataattctaaaggagtc 240
             |||||||||||||| ||||||||||
Sbjct: 95934 gcatcctgataattgtaaaggagtc 95910
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>gb|AC063968.5| Genomic sequence for Mus musculus, clone RP23-105K11, complete sequence
          Length = 222520

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 209   ctgagaagcatcctgataatt 229
             |||||||||||||||||||||
Sbjct: 42092 ctgagaagcatcctgataatt 42112
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>dbj|AK147716.1| Mus musculus melanocyte cDNA, RIKEN full-length enriched library,
            clone:G270004O14 product:F-box only protein 7, full
            insert sequence
          Length = 4732

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 209  ctgagaagcatcctgataatt 229
            |||||||||||||||||||||
Sbjct: 1277 ctgagaagcatcctgataatt 1257
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>gb|AC150899.3| Mus musculus BAC clone RP23-179F8 from chromosome 10, complete sequence
          Length = 202346

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 209   ctgagaagcatcctgataatt 229
             |||||||||||||||||||||
Sbjct: 96037 ctgagaagcatcctgataatt 96057
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>emb|BX815260.1|CNS0ADZP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS47ZC11 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2185

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 58   ctccatgcaaataaaatcgatcaggcacaagag 90
            |||||||||||||| || |||||||||| ||||
Sbjct: 1059 ctccatgcaaataagatggatcaggcacgagag 1091
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>gb|BT003874.1| Arabidopsis thaliana clone RAFL16-03-M21 (R50209) unknown protein
           (At1g67650) mRNA, partial cds
          Length = 1803

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 58  ctccatgcaaataaaatcgatcaggcacaagag 90
           |||||||||||||| || |||||||||| ||||
Sbjct: 634 ctccatgcaaataagatggatcaggcacgagag 666
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>gb|AC154329.3| Mus musculus BAC clone RP23-266K11 from chromosome 13, complete
             sequence
          Length = 188096

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 421   tggaaaaatgccatgacagaagata 445
             |||||||||| ||||||||||||||
Sbjct: 92162 tggaaaaatggcatgacagaagata 92138
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>gb|BC056557.1| Danio rerio TWIST neighbor, mRNA (cDNA clone IMAGE:6795293),
           partial cds
          Length = 3385

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 391 gcttctgtgcttgattctgc 410
           ||||||||||||||||||||
Sbjct: 683 gcttctgtgcttgattctgc 664
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>gb|AC151913.1| Pan troglodytes chromosome X clone RP43-057B02 map human ortholog q26.2,
              complete sequence
          Length = 173886

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 445    aacaagttggatgtgttcat 464
              ||||||||||||||||||||
Sbjct: 143540 aacaagttggatgtgttcat 143559
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>gb|AC151912.1| Pan troglodytes chromosome X clone PTB-093M21 map human ortholog q26.2,
             complete sequence
          Length = 180904

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 445   aacaagttggatgtgttcat 464
             ||||||||||||||||||||
Sbjct: 30820 aacaagttggatgtgttcat 30839
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 486     gctcaaccatgggcgtgatgaaga 509
               |||||||||||||||| |||||||
Sbjct: 4128324 gctcaaccatgggcgttatgaaga 4128301
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>gb|AY648783.1| Danio rerio twistnb-like mRNA, complete cds
          Length = 1209

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 391 gcttctgtgcttgattctgc 410
           ||||||||||||||||||||
Sbjct: 692 gcttctgtgcttgattctgc 673
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>gb|AC108909.15| Mus musculus chromosome 3, clone RP24-245I16, complete sequence
          Length = 194252

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     cttttgctcctccatgcaaa 68
              ||||||||||||||||||||
Sbjct: 110745 cttttgctcctccatgcaaa 110726
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>gb|BC064328.1| Danio rerio cDNA clone IMAGE:7000662
          Length = 3402

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 391 gcttctgtgcttgattctgc 410
           ||||||||||||||||||||
Sbjct: 679 gcttctgtgcttgattctgc 660
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>gb|AC150978.15| Medicago truncatula clone mth2-66m17, complete sequence
          Length = 125121

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 336  tacagttgctacacttgtag 355
            ||||||||||||||||||||
Sbjct: 2543 tacagttgctacacttgtag 2524
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>gb|AC125473.12| Medicago truncatula clone mth2-8j13, complete sequence
          Length = 103966

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 336  tacagttgctacacttgtag 355
            ||||||||||||||||||||
Sbjct: 6816 tacagttgctacacttgtag 6835
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>gb|AC126014.6| Medicago truncatula clone mth2-18j5, complete sequence
          Length = 113200

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 336   tacagttgctacacttgtag 355
             ||||||||||||||||||||
Sbjct: 92823 tacagttgctacacttgtag 92804
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>emb|Z97196.1|HS448E20 Human DNA sequence from clone RP3-448E20 on chromosome Xq25-26.3,
             complete sequence
          Length = 88882

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 445   aacaagttggatgtgttcat 464
             ||||||||||||||||||||
Sbjct: 69873 aacaagttggatgtgttcat 69854
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>emb|AL121999.18|HSJ543J13 Human DNA sequence from clone RP4-543J13 on chromosome 1p13.1-13.3
              Contains a novel gene, complete sequence
          Length = 137490

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 255    ccagattgctgccaatgcca 274
              ||||||||||||||||||||
Sbjct: 110865 ccagattgctgccaatgcca 110884
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>gb|AC108933.3| Homo sapiens BAC clone RP11-392K14 from 4, complete sequence
          Length = 87325

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    aaagaagccctgtattctgc 41
             ||||||||||||||||||||
Sbjct: 58110 aaagaagccctgtattctgc 58129
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>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 450    gttggatgtgttcatgcggg 469
              ||||||||||||||||||||
Sbjct: 573776 gttggatgtgttcatgcggg 573795
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>emb|BX322798.6| Zebrafish DNA sequence from clone CH211-231F6 in linkage group 24,
             complete sequence
          Length = 109868

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 128   tattccctgttttacttcaa 147
             ||||||||||||||||||||
Sbjct: 39175 tattccctgttttacttcaa 39156
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>gb|AC011454.6|AC011454 Homo sapiens chromosome 19 clone CTC-347E6, complete sequence
          Length = 163120

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 278    attttcaggttgctgctgat 297
              ||||||||||||||||||||
Sbjct: 136107 attttcaggttgctgctgat 136088
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>ref|NM_001007153.1| Danio rerio TWIST neighbor (twistnb), mRNA
          Length = 1209

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 391 gcttctgtgcttgattctgc 410
           ||||||||||||||||||||
Sbjct: 692 gcttctgtgcttgattctgc 673
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>gb|AC008113.4|AC008113 Genomic sequence for Arabidopsis thaliana BAC F12A21 from chromosome I,
             complete sequence
          Length = 114190

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 55    ctcctccatgcaaataaaatcgatcagg 82
             ||||||||||||||||| || |||||||
Sbjct: 76336 ctcctccatgcaaataagatggatcagg 76363
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>gb|AC015600.8| Homo sapiens chromosome 11, clone RP11-45C5, complete sequence
          Length = 154158

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   ccagattgctgccaatgcca 274
             ||||||||||||||||||||
Sbjct: 78402 ccagattgctgccaatgcca 78421
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>emb|BX842668.3| Mouse DNA sequence from clone RP23-161M5 on chromosome 2, complete
             sequence
          Length = 105989

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 436   acagaagataacaagttgga 455
             ||||||||||||||||||||
Sbjct: 39428 acagaagataacaagttgga 39447
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>emb|AL929449.14| Mouse DNA sequence from clone RP23-279D23 on chromosome 2, complete
             sequence
          Length = 146396

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 398   tgcttgattctgctatcaag 417
             ||||||||||||||||||||
Sbjct: 13943 tgcttgattctgctatcaag 13962
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>gb|AC145978.3| Gallus gallus BAC clone CH261-10K7 from chromosome unknown, complete
              sequence
          Length = 216402

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 250    cttgcccagattgctgccaatgccaaccattt 281
              |||||||||||| || ||||||||||| ||||
Sbjct: 194098 cttgcccagatttctaccaatgccaacaattt 194129
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>gb|AC116729.14| Mus musculus chromosome 3, clone RP23-346I1, complete sequence
          Length = 224088

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 232    aaaggagtcctccttgcact 251
              ||||||||||||||||||||
Sbjct: 139814 aaaggagtcctccttgcact 139833


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,640,687
Number of Sequences: 3902068
Number of extensions: 4640687
Number of successful extensions: 81073
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80940
Number of HSP's gapped (non-prelim): 130
length of query: 543
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 520
effective length of database: 17,143,297,704
effective search space: 8914514806080
effective search space used: 8914514806080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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