ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6g10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY534122.1|SEG_AY534122S1 Aegilops tauschii transposon XJ, co... 46 0.011
2emb|X94549.1|ACPCPNTER A.carterae precursor of peridinin-chlorop... 40 0.67
3ref|XM_546089.2| PREDICTED: Canis familiaris similar to egl nine... 38 2.6
4ref|NM_033636.2| Homo sapiens SCAN domain containing 2 (SCAND2),... 38 2.6
5ref|NM_033635.2| Homo sapiens SCAN domain containing 2 (SCAND2),... 38 2.6
6ref|NM_033634.2| Homo sapiens SCAN domain containing 2 (SCAND2),... 38 2.6
7ref|NM_022050.3| Homo sapiens SCAN domain containing 2 (SCAND2),... 38 2.6
8ref|NM_033633.2| Homo sapiens SCAN domain containing 2 (SCAND2),... 38 2.6
9gb|AC115102.7| Homo sapiens chromosome 15, clone RP11-245C17, co... 38 2.6
10emb|AL138681.17| Human DNA sequence from clone RP11-121O19 on ch... 38 2.6
11gb|AC048382.7| Homo sapiens chromosome 15, clone RP11-182J1, com... 38 2.6
12dbj|AK172513.1| Mus musculus activated spleen cDNA, RIKEN full-l... 38 2.6
13dbj|AK048763.1| Mus musculus 0 day neonate cerebellum cDNA, RIKE... 38 2.6
14gb|AF244812.1|AF244812 Homo sapiens SCAN domain-containing prote... 38 2.6
15gb|AF229246.1|AF229246 Homo sapiens SCAND2 mRNA, complete cds 38 2.6
16gb|AC107631.20| Mus musculus chromosome 5, clone RP23-5M20, comp... 38 2.6
17ref|NM_001035531.1| Mus musculus adrenergic receptor kinase, bet... 38 2.6 
>gb|AY534122.1|SEG_AY534122S1 Aegilops tauschii transposon XJ, complete sequence; putative Bowman
            Birk trypsin inhibitor gene, complete cds; Stowaway MITE,
            complete sequence; and insertion sequences xl_tt1a and
            xl_tt1b putative ripening related protein genes, complete
            cds
          Length = 26073

 Score = 46.1 bits (23), Expect = 0.011
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 4    ctcctgccgagccaaggcaaagg 26
            |||||||||||||||||||||||
Sbjct: 8393 ctcctgccgagccaaggcaaagg 8415
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>emb|X94549.1|ACPCPNTER A.carterae precursor of peridinin-chlorophylla-protein (PCP) gene
          Length = 1272

 Score = 40.1 bits (20), Expect = 0.67
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 15  ccaaggcaaaggccaagcag 34
           ||||||||||||||||||||
Sbjct: 554 ccaaggcaaaggccaagcag 535
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>ref|XM_546089.2| PREDICTED: Canis familiaris similar to egl nine homolog 1
           (LOC488971), mRNA
          Length = 1847

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 14  gccaaggcaaaggccaagc 32
           |||||||||||||||||||
Sbjct: 385 gccaaggcaaaggccaagc 403
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>ref|NM_033636.2| Homo sapiens SCAN domain containing 2 (SCAND2), transcript variant 5,
            mRNA
          Length = 3102

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 13   agccaaggcaaaggccaag 31
            |||||||||||||||||||
Sbjct: 1201 agccaaggcaaaggccaag 1219
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>ref|NM_033635.2| Homo sapiens SCAN domain containing 2 (SCAND2), transcript variant 4,
            mRNA
          Length = 3060

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 13   agccaaggcaaaggccaag 31
            |||||||||||||||||||
Sbjct: 1201 agccaaggcaaaggccaag 1219
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>ref|NM_033634.2| Homo sapiens SCAN domain containing 2 (SCAND2), transcript variant 3,
            mRNA
          Length = 1692

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 13   agccaaggcaaaggccaag 31
            |||||||||||||||||||
Sbjct: 1201 agccaaggcaaaggccaag 1219
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>ref|NM_022050.3| Homo sapiens SCAN domain containing 2 (SCAND2), transcript variant 1,
            mRNA
          Length = 3353

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 13   agccaaggcaaaggccaag 31
            |||||||||||||||||||
Sbjct: 1201 agccaaggcaaaggccaag 1219
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>ref|NM_033633.2| Homo sapiens SCAN domain containing 2 (SCAND2), transcript variant 2,
            mRNA
          Length = 1747

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 13   agccaaggcaaaggccaag 31
            |||||||||||||||||||
Sbjct: 1201 agccaaggcaaaggccaag 1219
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>gb|AC115102.7| Homo sapiens chromosome 15, clone RP11-245C17, complete sequence
          Length = 165747

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 13    agccaaggcaaaggccaag 31
             |||||||||||||||||||
Sbjct: 62242 agccaaggcaaaggccaag 62224
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>emb|AL138681.17| Human DNA sequence from clone RP11-121O19 on chromosome 13q12.3-14.3
             Contains the gene for highly charged protein (D13S106E)
             (FLJ32952) and two CpG islands, complete sequence
          Length = 126262

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 15    ccaaggcaaaggccaagca 33
             |||||||||||||||||||
Sbjct: 90336 ccaaggcaaaggccaagca 90354
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>gb|AC048382.7| Homo sapiens chromosome 15, clone RP11-182J1, complete sequence
          Length = 171486

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 13     agccaaggcaaaggccaag 31
              |||||||||||||||||||
Sbjct: 142943 agccaaggcaaaggccaag 142961
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>dbj|AK172513.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
           library, clone:F830211P10 product:adrenergic receptor
           kinase, beta 2, full insert sequence
          Length = 1557

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 15  ccaaggcaaaggccaagcaggaa 37
           ||||||||| |||||||||||||
Sbjct: 811 ccaaggcaagggccaagcaggaa 833
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>dbj|AK048763.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:C230050J15 product:hypothetical
           Regulator of G Protein Signaling (RGS) domain containing
           protein, full insert sequence
          Length = 1546

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 15  ccaaggcaaaggccaagcaggaa 37
           ||||||||| |||||||||||||
Sbjct: 824 ccaaggcaagggccaagcaggaa 846
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>gb|AF244812.1|AF244812 Homo sapiens SCAN domain-containing protein 2 (SCAND2) gene, complete
            cds, alternatively spliced
          Length = 13029

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 13   agccaaggcaaaggccaag 31
            |||||||||||||||||||
Sbjct: 4584 agccaaggcaaaggccaag 4602
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>gb|AF229246.1|AF229246 Homo sapiens SCAND2 mRNA, complete cds
          Length = 3291

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 13   agccaaggcaaaggccaag 31
            |||||||||||||||||||
Sbjct: 1216 agccaaggcaaaggccaag 1234
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>gb|AC107631.20| Mus musculus chromosome 5, clone RP23-5M20, complete sequence
          Length = 225977

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 15    ccaaggcaaaggccaagcaggaa 37
             ||||||||| |||||||||||||
Sbjct: 63921 ccaaggcaagggccaagcaggaa 63943
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>ref|NM_001035531.1| Mus musculus adrenergic receptor kinase, beta 2 (Adrbk2),
           transcript variant 2, mRNA
          Length = 1561

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 15  ccaaggcaaaggccaagcaggaa 37
           ||||||||| |||||||||||||
Sbjct: 835 ccaaggcaagggccaagcaggaa 857


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 987,640
Number of Sequences: 3902068
Number of extensions: 987640
Number of successful extensions: 22738
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22721
Number of HSP's gapped (non-prelim): 17
length of query: 68
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 47
effective length of database: 17,151,101,840
effective search space: 806101786480
effective search space used: 806101786480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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