ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY103804.1| Zea mays PCO102583 mRNA sequence 119 1e-24
2ref|XM_468448.1| Oryza sativa (japonica cultivar-group), mRNA 103 8e-20
3dbj|AK103477.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 8e-20
4dbj|AK071291.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 8e-20
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 78 5e-12
6dbj|AP004020.3| Oryza sativa (japonica cultivar-group) genomic D... 78 5e-12
7dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic D... 78 5e-12
8gb|AC135426.2| Oryza sativa (japonica cultivar-group) chromosome... 62 3e-07
9gb|AC144738.2| Oryza sativa (japonica cultivar-group) chromosome... 62 3e-07
10dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 62 3e-07
11gb|AY231958.1| Drosophila yakuba clone yak-em_Fib mRNA sequence 46 0.017
12gb|AY190941.1| Drosophila erecta clone DERF01_12_N08 (D1431) gen... 46 0.017
13gb|AC165265.2| Mus musculus BAC clone RP23-15M14 from chromosome... 42 0.26
14gb|AC159242.2| Mus musculus BAC clone RP24-325A23 from chromosom... 42 0.26
15ref|XM_501884.1| Yarrowia lipolytica CLIB122, YALI0C15873g predi... 40 1.0
16emb|AL139429.8| Human DNA sequence from clone RP11-110K14 on chr... 40 1.0
17emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 40 1.0
18gb|AC099035.2| Drosophila melanogaster clone BACR37H13, complete... 38 4.0
19gb|AC158933.3| Mus musculus chromosome 1, clone RP23-300M22, com... 38 4.0
20emb|Z69637.1|CEF35G2 Caenorhabditis elegans Cosmid F35G2, comple... 38 4.0
21ref|NM_079093.2| Drosophila melanogaster Fibrillarin CG9888-RA (... 38 4.0
22ref|NM_069913.2| Caenorhabditis elegans F35G2.1a (F35G2.1) mRNA,... 38 4.0
23gb|AC008352.2|AC008352 Drosophila melanogaster, chromosome 2R, r... 38 4.0
24gb|AE003459.3| Drosophila melanogaster chromosome 2R, section 67... 38 4.0
25gb|BT001738.1| Drosophila melanogaster RE72617 full insert cDNA 38 4.0

>gb|AY103804.1| Zea mays PCO102583 mRNA sequence
          Length = 1283

 Score =  119 bits (60), Expect = 1e-24
 Identities = 83/91 (91%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaaccccttcaggtccaagctggctgctgccgtgctaggtggtgtggacaacatctgga 60
           ||||||||||| | ||||||||||||||||| ||||| |||||||| |||||||||||||
Sbjct: 438 ggaaccccttccgttccaagctggctgctgctgtgcttggtggtgttgacaacatctgga 497

                                          
Query: 61  ttgctcctggaactcgtgtgctgnatcttgg 91
           |||||||||| || ||||||||| |||||||
Sbjct: 498 ttgctcctggtacccgtgtgctgtatcttgg 528



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>ref|XM_468448.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 921

 Score =  103 bits (52), Expect = 8e-20
 Identities = 73/80 (91%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaaccccttcaggtccaagctggctgctgccgtgctaggtggtgtggacaacatctgga 60
           ||||||||||| | || |||||||||||||| ||||| |||||||| |||||||||||||
Sbjct: 359 ggaaccccttccgttctaagctggctgctgctgtgcttggtggtgtcgacaacatctgga 418

                               
Query: 61  ttgctcctggaactcgtgtg 80
           |||||||||| |||||||||
Sbjct: 419 ttgctcctggtactcgtgtg 438



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>dbj|AK103477.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033130D23, full
           insert sequence
          Length = 1824

 Score =  103 bits (52), Expect = 8e-20
 Identities = 73/80 (91%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaaccccttcaggtccaagctggctgctgccgtgctaggtggtgtggacaacatctgga 60
           ||||||||||| | || |||||||||||||| ||||| |||||||| |||||||||||||
Sbjct: 451 ggaaccccttccgttctaagctggctgctgctgtgcttggtggtgtcgacaacatctgga 510

                               
Query: 61  ttgctcctggaactcgtgtg 80
           |||||||||| |||||||||
Sbjct: 511 ttgctcctggtactcgtgtg 530



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>dbj|AK071291.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088O08, full
           insert sequence
          Length = 1077

 Score =  103 bits (52), Expect = 8e-20
 Identities = 73/80 (91%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaaccccttcaggtccaagctggctgctgccgtgctaggtggtgtggacaacatctgga 60
           ||||||||||| | || |||||||||||||| ||||| |||||||| |||||||||||||
Sbjct: 337 ggaaccccttccgttctaagctggctgctgctgtgcttggtggtgtcgacaacatctgga 396

                               
Query: 61  ttgctcctggaactcgtgtg 80
           |||||||||| |||||||||
Sbjct: 397 ttgctcctggtactcgtgtg 416



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 77.8 bits (39), Expect = 5e-12
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                            
Query: 1        ggaaccccttcaggtccaagctggctgctgccgtgctaggtggtgtggacaacatctgga 60
                ||||||||||| | || |||||||||||||| ||||| |||||||| |||||||||||||
Sbjct: 35290878 ggaaccccttccgttctaagctggctgctgctgtgcttggtggtgtcgacaacatctgga 35290937

                   
Query: 61       ttg 63
                |||
Sbjct: 35290938 ttg 35290940



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>dbj|AP004020.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1119_A01
          Length = 108727

 Score = 77.8 bits (39), Expect = 5e-12
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                         
Query: 1     ggaaccccttcaggtccaagctggctgctgccgtgctaggtggtgtggacaacatctgga 60
             ||||||||||| | || |||||||||||||| ||||| |||||||| |||||||||||||
Sbjct: 41212 ggaaccccttccgttctaagctggctgctgctgtgcttggtggtgtcgacaacatctgga 41271

                
Query: 61    ttg 63
             |||
Sbjct: 41272 ttg 41274



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>dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0474F11
          Length = 139544

 Score = 77.8 bits (39), Expect = 5e-12
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                          
Query: 1      ggaaccccttcaggtccaagctggctgctgccgtgctaggtggtgtggacaacatctgga 60
              ||||||||||| | || |||||||||||||| ||||| |||||||| |||||||||||||
Sbjct: 102928 ggaaccccttccgttctaagctggctgctgctgtgcttggtggtgtcgacaacatctgga 102987

                 
Query: 61     ttg 63
              |||
Sbjct: 102988 ttg 102990



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>gb|AC135426.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0617A08,
              complete sequence
          Length = 144781

 Score = 61.9 bits (31), Expect = 3e-07
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                          
Query: 1      ggaaccccttcaggtccaagctggctgctgccgtgctaggtggtgtggacaacatctgga 60
              |||| |||||| | || ||| |||||||||| ||||| |||||||| |||||||||||||
Sbjct: 122657 ggaatcccttccgttcaaagttggctgctgctgtgcttggtggtgttgacaacatctgga 122716

                 
Query: 61     ttg 63
              |||
Sbjct: 122717 ttg 122719



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>gb|AC144738.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0029B02, complete sequence
          Length = 156649

 Score = 61.9 bits (31), Expect = 3e-07
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                         
Query: 1     ggaaccccttcaggtccaagctggctgctgccgtgctaggtggtgtggacaacatctgga 60
             |||| |||||| | || ||| |||||||||| ||||| |||||||| |||||||||||||
Sbjct: 11500 ggaatcccttccgttcaaagttggctgctgctgtgcttggtggtgttgacaacatctgga 11559

                
Query: 61    ttg 63
             |||
Sbjct: 11560 ttg 11562



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 61.9 bits (31), Expect = 3e-07
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                           
Query: 1       ggaaccccttcaggtccaagctggctgctgccgtgctaggtggtgtggacaacatctgga 60
               |||| |||||| | || ||| |||||||||| ||||| |||||||| |||||||||||||
Sbjct: 4501033 ggaatcccttccgttcaaagttggctgctgctgtgcttggtggtgttgacaacatctgga 4501092

                  
Query: 61      ttg 63
               |||
Sbjct: 4501093 ttg 4501095



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>gb|AY231958.1| Drosophila yakuba clone yak-em_Fib mRNA sequence
          Length = 567

 Score = 46.1 bits (23), Expect = 0.017
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 1   ggaaccccttcaggtccaagctggctgctgccgtgctaggtgg 43
           |||| |||||| | |||||||||||||||||||| || |||||
Sbjct: 158 ggaatcccttccgttccaagctggctgctgccgttctgggtgg 200



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>gb|AY190941.1| Drosophila erecta clone DERF01_12_N08 (D1431) genomic sequence
          Length = 43101

 Score = 46.1 bits (23), Expect = 0.017
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                        
Query: 1     ggaaccccttcaggtccaagctggctgctgccgtgctaggtgg 43
             |||| |||||| | |||||||||||||||||||| || |||||
Sbjct: 28035 ggaatcccttccgttccaagctggctgctgccgttctgggtgg 27993



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>gb|AC165265.2| Mus musculus BAC clone RP23-15M14 from chromosome 13, complete
            sequence
          Length = 237830

 Score = 42.1 bits (21), Expect = 0.26
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 20   gctggctgctgccgtgctagg 40
            |||||||||||||||||||||
Sbjct: 3812 gctggctgctgccgtgctagg 3832



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>gb|AC159242.2| Mus musculus BAC clone RP24-325A23 from chromosome 13, complete
             sequence
          Length = 193570

 Score = 42.1 bits (21), Expect = 0.26
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 20    gctggctgctgccgtgctagg 40
             |||||||||||||||||||||
Sbjct: 14638 gctggctgctgccgtgctagg 14618



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>ref|XM_501884.1| Yarrowia lipolytica CLIB122, YALI0C15873g predicted mRNA
          Length = 966

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 1   ggaaccccttcaggtccaagctggctgc 28
           ||||||||||| | ||||||||||||||
Sbjct: 419 ggaaccccttccgatccaagctggctgc 446



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>emb|AL139429.8| Human DNA sequence from clone RP11-110K14 on chromosome 20 Contains
             part of the SLC24A3 gene for solute carrier family 24
             (sodium/potassium/calcium exchanger) member 3, complete
             sequence
          Length = 90052

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    aacatctggattgctcctgg 70
             ||||||||||||||||||||
Sbjct: 32503 aacatctggattgctcctgg 32522



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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 1       ggaaccccttcaggtccaagctggctgc 28
               ||||||||||| | ||||||||||||||
Sbjct: 2255971 ggaaccccttccgatccaagctggctgc 2255944



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>gb|AC099035.2| Drosophila melanogaster clone BACR37H13, complete sequence
          Length = 175448

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 37/43 (86%)
 Strand = Plus / Minus

                                                         
Query: 1      ggaaccccttcaggtccaagctggctgctgccgtgctaggtgg 43
              |||| |||||| | |||||||||||||| ||||| || |||||
Sbjct: 175228 ggaatcccttccgctccaagctggctgccgccgttctgggtgg 175186



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>gb|AC158933.3| Mus musculus chromosome 1, clone RP23-300M22, complete sequence
          Length = 152221

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 45    gtggacaacatctggattg 63
             |||||||||||||||||||
Sbjct: 43903 gtggacaacatctggattg 43885



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>emb|Z69637.1|CEF35G2 Caenorhabditis elegans Cosmid F35G2, complete sequence
          Length = 35379

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 58    ggattgctcctggaactcg 76
             |||||||||||||||||||
Sbjct: 18336 ggattgctcctggaactcg 18318



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>ref|NM_079093.2| Drosophila melanogaster Fibrillarin CG9888-RA (Fib), mRNA
          Length = 1331

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 37/43 (86%)
 Strand = Plus / Plus

                                                      
Query: 1   ggaaccccttcaggtccaagctggctgctgccgtgctaggtgg 43
           |||| |||||| | |||||||||||||| ||||| || |||||
Sbjct: 611 ggaatcccttccgctccaagctggctgccgccgttctgggtgg 653



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>ref|NM_069913.2| Caenorhabditis elegans F35G2.1a (F35G2.1) mRNA, complete cds
          Length = 2700

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 58   ggattgctcctggaactcg 76
            |||||||||||||||||||
Sbjct: 1197 ggattgctcctggaactcg 1179



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>gb|AC008352.2|AC008352 Drosophila melanogaster, chromosome 2R, region 59C-59D, BAC clone
              BACR08P09, complete sequence
          Length = 181463

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 37/43 (86%)
 Strand = Plus / Minus

                                                         
Query: 1      ggaaccccttcaggtccaagctggctgctgccgtgctaggtgg 43
              |||| |||||| | |||||||||||||| ||||| || |||||
Sbjct: 111898 ggaatcccttccgctccaagctggctgccgccgttctgggtgg 111856



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>gb|AE003459.3| Drosophila melanogaster chromosome 2R, section 67 of 73 of the complete
              sequence
          Length = 283700

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 37/43 (86%)
 Strand = Plus / Minus

                                                         
Query: 1      ggaaccccttcaggtccaagctggctgctgccgtgctaggtgg 43
              |||| |||||| | |||||||||||||| ||||| || |||||
Sbjct: 177711 ggaatcccttccgctccaagctggctgccgccgttctgggtgg 177669



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>gb|BT001738.1| Drosophila melanogaster RE72617 full insert cDNA
          Length = 1235

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 37/43 (86%)
 Strand = Plus / Plus

                                                      
Query: 1   ggaaccccttcaggtccaagctggctgctgccgtgctaggtgg 43
           |||| |||||| | |||||||||||||| ||||| || |||||
Sbjct: 572 ggaatcccttccgctccaagctggctgccgccgttctgggtgg 614


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 819,841
Number of Sequences: 3902068
Number of extensions: 819841
Number of successful extensions: 43151
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43105
Number of HSP's gapped (non-prelim): 46
length of query: 93
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 72
effective length of database: 17,151,101,840
effective search space: 1234879332480
effective search space used: 1234879332480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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