| Clone Name | bags6g07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY103804.1| Zea mays PCO102583 mRNA sequence Length = 1283 Score = 119 bits (60), Expect = 1e-24 Identities = 83/91 (91%) Strand = Plus / Plus Query: 1 ggaaccccttcaggtccaagctggctgctgccgtgctaggtggtgtggacaacatctgga 60 ||||||||||| | ||||||||||||||||| ||||| |||||||| ||||||||||||| Sbjct: 438 ggaaccccttccgttccaagctggctgctgctgtgcttggtggtgttgacaacatctgga 497 Query: 61 ttgctcctggaactcgtgtgctgnatcttgg 91 |||||||||| || ||||||||| ||||||| Sbjct: 498 ttgctcctggtacccgtgtgctgtatcttgg 528
>ref|XM_468448.1| Oryza sativa (japonica cultivar-group), mRNA Length = 921 Score = 103 bits (52), Expect = 8e-20 Identities = 73/80 (91%) Strand = Plus / Plus Query: 1 ggaaccccttcaggtccaagctggctgctgccgtgctaggtggtgtggacaacatctgga 60 ||||||||||| | || |||||||||||||| ||||| |||||||| ||||||||||||| Sbjct: 359 ggaaccccttccgttctaagctggctgctgctgtgcttggtggtgtcgacaacatctgga 418 Query: 61 ttgctcctggaactcgtgtg 80 |||||||||| ||||||||| Sbjct: 419 ttgctcctggtactcgtgtg 438
>dbj|AK103477.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033130D23, full insert sequence Length = 1824 Score = 103 bits (52), Expect = 8e-20 Identities = 73/80 (91%) Strand = Plus / Plus Query: 1 ggaaccccttcaggtccaagctggctgctgccgtgctaggtggtgtggacaacatctgga 60 ||||||||||| | || |||||||||||||| ||||| |||||||| ||||||||||||| Sbjct: 451 ggaaccccttccgttctaagctggctgctgctgtgcttggtggtgtcgacaacatctgga 510 Query: 61 ttgctcctggaactcgtgtg 80 |||||||||| ||||||||| Sbjct: 511 ttgctcctggtactcgtgtg 530
>dbj|AK071291.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088O08, full insert sequence Length = 1077 Score = 103 bits (52), Expect = 8e-20 Identities = 73/80 (91%) Strand = Plus / Plus Query: 1 ggaaccccttcaggtccaagctggctgctgccgtgctaggtggtgtggacaacatctgga 60 ||||||||||| | || |||||||||||||| ||||| |||||||| ||||||||||||| Sbjct: 337 ggaaccccttccgttctaagctggctgctgctgtgcttggtggtgtcgacaacatctgga 396 Query: 61 ttgctcctggaactcgtgtg 80 |||||||||| ||||||||| Sbjct: 397 ttgctcctggtactcgtgtg 416
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 77.8 bits (39), Expect = 5e-12 Identities = 57/63 (90%) Strand = Plus / Plus Query: 1 ggaaccccttcaggtccaagctggctgctgccgtgctaggtggtgtggacaacatctgga 60 ||||||||||| | || |||||||||||||| ||||| |||||||| ||||||||||||| Sbjct: 35290878 ggaaccccttccgttctaagctggctgctgctgtgcttggtggtgtcgacaacatctgga 35290937 Query: 61 ttg 63 ||| Sbjct: 35290938 ttg 35290940
>dbj|AP004020.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1119_A01 Length = 108727 Score = 77.8 bits (39), Expect = 5e-12 Identities = 57/63 (90%) Strand = Plus / Plus Query: 1 ggaaccccttcaggtccaagctggctgctgccgtgctaggtggtgtggacaacatctgga 60 ||||||||||| | || |||||||||||||| ||||| |||||||| ||||||||||||| Sbjct: 41212 ggaaccccttccgttctaagctggctgctgctgtgcttggtggtgtcgacaacatctgga 41271 Query: 61 ttg 63 ||| Sbjct: 41272 ttg 41274
>dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0474F11 Length = 139544 Score = 77.8 bits (39), Expect = 5e-12 Identities = 57/63 (90%) Strand = Plus / Plus Query: 1 ggaaccccttcaggtccaagctggctgctgccgtgctaggtggtgtggacaacatctgga 60 ||||||||||| | || |||||||||||||| ||||| |||||||| ||||||||||||| Sbjct: 102928 ggaaccccttccgttctaagctggctgctgctgtgcttggtggtgtcgacaacatctgga 102987 Query: 61 ttg 63 ||| Sbjct: 102988 ttg 102990
>gb|AC135426.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0617A08, complete sequence Length = 144781 Score = 61.9 bits (31), Expect = 3e-07 Identities = 55/63 (87%) Strand = Plus / Plus Query: 1 ggaaccccttcaggtccaagctggctgctgccgtgctaggtggtgtggacaacatctgga 60 |||| |||||| | || ||| |||||||||| ||||| |||||||| ||||||||||||| Sbjct: 122657 ggaatcccttccgttcaaagttggctgctgctgtgcttggtggtgttgacaacatctgga 122716 Query: 61 ttg 63 ||| Sbjct: 122717 ttg 122719
>gb|AC144738.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0029B02, complete sequence Length = 156649 Score = 61.9 bits (31), Expect = 3e-07 Identities = 55/63 (87%) Strand = Plus / Plus Query: 1 ggaaccccttcaggtccaagctggctgctgccgtgctaggtggtgtggacaacatctgga 60 |||| |||||| | || ||| |||||||||| ||||| |||||||| ||||||||||||| Sbjct: 11500 ggaatcccttccgttcaaagttggctgctgctgtgcttggtggtgttgacaacatctgga 11559 Query: 61 ttg 63 ||| Sbjct: 11560 ttg 11562
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 61.9 bits (31), Expect = 3e-07 Identities = 55/63 (87%) Strand = Plus / Plus Query: 1 ggaaccccttcaggtccaagctggctgctgccgtgctaggtggtgtggacaacatctgga 60 |||| |||||| | || ||| |||||||||| ||||| |||||||| ||||||||||||| Sbjct: 4501033 ggaatcccttccgttcaaagttggctgctgctgtgcttggtggtgttgacaacatctgga 4501092 Query: 61 ttg 63 ||| Sbjct: 4501093 ttg 4501095
>gb|AY231958.1| Drosophila yakuba clone yak-em_Fib mRNA sequence Length = 567 Score = 46.1 bits (23), Expect = 0.017 Identities = 38/43 (88%) Strand = Plus / Plus Query: 1 ggaaccccttcaggtccaagctggctgctgccgtgctaggtgg 43 |||| |||||| | |||||||||||||||||||| || ||||| Sbjct: 158 ggaatcccttccgttccaagctggctgctgccgttctgggtgg 200
>gb|AY190941.1| Drosophila erecta clone DERF01_12_N08 (D1431) genomic sequence Length = 43101 Score = 46.1 bits (23), Expect = 0.017 Identities = 38/43 (88%) Strand = Plus / Minus Query: 1 ggaaccccttcaggtccaagctggctgctgccgtgctaggtgg 43 |||| |||||| | |||||||||||||||||||| || ||||| Sbjct: 28035 ggaatcccttccgttccaagctggctgctgccgttctgggtgg 27993
>gb|AC165265.2| Mus musculus BAC clone RP23-15M14 from chromosome 13, complete sequence Length = 237830 Score = 42.1 bits (21), Expect = 0.26 Identities = 21/21 (100%) Strand = Plus / Plus Query: 20 gctggctgctgccgtgctagg 40 ||||||||||||||||||||| Sbjct: 3812 gctggctgctgccgtgctagg 3832
>gb|AC159242.2| Mus musculus BAC clone RP24-325A23 from chromosome 13, complete sequence Length = 193570 Score = 42.1 bits (21), Expect = 0.26 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 gctggctgctgccgtgctagg 40 ||||||||||||||||||||| Sbjct: 14638 gctggctgctgccgtgctagg 14618
>ref|XM_501884.1| Yarrowia lipolytica CLIB122, YALI0C15873g predicted mRNA Length = 966 Score = 40.1 bits (20), Expect = 1.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 1 ggaaccccttcaggtccaagctggctgc 28 ||||||||||| | |||||||||||||| Sbjct: 419 ggaaccccttccgatccaagctggctgc 446
>emb|AL139429.8| Human DNA sequence from clone RP11-110K14 on chromosome 20 Contains part of the SLC24A3 gene for solute carrier family 24 (sodium/potassium/calcium exchanger) member 3, complete sequence Length = 90052 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 aacatctggattgctcctgg 70 |||||||||||||||||||| Sbjct: 32503 aacatctggattgctcctgg 32522
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 40.1 bits (20), Expect = 1.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 1 ggaaccccttcaggtccaagctggctgc 28 ||||||||||| | |||||||||||||| Sbjct: 2255971 ggaaccccttccgatccaagctggctgc 2255944
>gb|AC099035.2| Drosophila melanogaster clone BACR37H13, complete sequence Length = 175448 Score = 38.2 bits (19), Expect = 4.0 Identities = 37/43 (86%) Strand = Plus / Minus Query: 1 ggaaccccttcaggtccaagctggctgctgccgtgctaggtgg 43 |||| |||||| | |||||||||||||| ||||| || ||||| Sbjct: 175228 ggaatcccttccgctccaagctggctgccgccgttctgggtgg 175186
>gb|AC158933.3| Mus musculus chromosome 1, clone RP23-300M22, complete sequence Length = 152221 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 gtggacaacatctggattg 63 ||||||||||||||||||| Sbjct: 43903 gtggacaacatctggattg 43885
>emb|Z69637.1|CEF35G2 Caenorhabditis elegans Cosmid F35G2, complete sequence Length = 35379 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 58 ggattgctcctggaactcg 76 ||||||||||||||||||| Sbjct: 18336 ggattgctcctggaactcg 18318
>ref|NM_079093.2| Drosophila melanogaster Fibrillarin CG9888-RA (Fib), mRNA Length = 1331 Score = 38.2 bits (19), Expect = 4.0 Identities = 37/43 (86%) Strand = Plus / Plus Query: 1 ggaaccccttcaggtccaagctggctgctgccgtgctaggtgg 43 |||| |||||| | |||||||||||||| ||||| || ||||| Sbjct: 611 ggaatcccttccgctccaagctggctgccgccgttctgggtgg 653
>ref|NM_069913.2| Caenorhabditis elegans F35G2.1a (F35G2.1) mRNA, complete cds Length = 2700 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 58 ggattgctcctggaactcg 76 ||||||||||||||||||| Sbjct: 1197 ggattgctcctggaactcg 1179
>gb|AC008352.2|AC008352 Drosophila melanogaster, chromosome 2R, region 59C-59D, BAC clone BACR08P09, complete sequence Length = 181463 Score = 38.2 bits (19), Expect = 4.0 Identities = 37/43 (86%) Strand = Plus / Minus Query: 1 ggaaccccttcaggtccaagctggctgctgccgtgctaggtgg 43 |||| |||||| | |||||||||||||| ||||| || ||||| Sbjct: 111898 ggaatcccttccgctccaagctggctgccgccgttctgggtgg 111856
>gb|AE003459.3| Drosophila melanogaster chromosome 2R, section 67 of 73 of the complete sequence Length = 283700 Score = 38.2 bits (19), Expect = 4.0 Identities = 37/43 (86%) Strand = Plus / Minus Query: 1 ggaaccccttcaggtccaagctggctgctgccgtgctaggtgg 43 |||| |||||| | |||||||||||||| ||||| || ||||| Sbjct: 177711 ggaatcccttccgctccaagctggctgccgccgttctgggtgg 177669
>gb|BT001738.1| Drosophila melanogaster RE72617 full insert cDNA Length = 1235 Score = 38.2 bits (19), Expect = 4.0 Identities = 37/43 (86%) Strand = Plus / Plus Query: 1 ggaaccccttcaggtccaagctggctgctgccgtgctaggtgg 43 |||| |||||| | |||||||||||||| ||||| || ||||| Sbjct: 572 ggaatcccttccgctccaagctggctgccgccgttctgggtgg 614 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 819,841 Number of Sequences: 3902068 Number of extensions: 819841 Number of successful extensions: 43151 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43105 Number of HSP's gapped (non-prelim): 46 length of query: 93 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 72 effective length of database: 17,151,101,840 effective search space: 1234879332480 effective search space used: 1234879332480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)