ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6g05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 127 1e-26
2gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, co... 127 1e-26
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 127 1e-26
4dbj|AK111624.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 1e-26
5dbj|AK111530.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 1e-26
6dbj|AK106141.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 1e-26
7dbj|AK098942.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 1e-26
8dbj|AK060922.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 1e-26
9gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare str... 127 1e-26
10gb|AY278988.1| Zea mays PPR2 (ppr2) gene, complete cds; nuclear ... 92 7e-16
11gb|AY110093.1| Zea mays CL15341_1 mRNA sequence 66 4e-08
12gb|AC174352.7| Medicago truncatula clone mth2-7o1, complete sequ... 52 6e-04
13gb|AC102696.6| Mus musculus chromosome 7, clone RP24-112I14, com... 40 2.2
14gb|AC160535.3| Mus musculus chromosome 7, clone RP24-298A23, com... 40 2.2
15ref|NM_111518.4| Arabidopsis thaliana EMB2750 AT3G06430 (EMB2750... 38 8.8
16emb|CR376775.7| Zebrafish DNA sequence from clone CH211-197C5 in... 38 8.8
17emb|CR936261.8| Zebrafish DNA sequence from clone DKEY-207A6 in ... 38 8.8
18gb|AC011623.5|ATAC011623 Arabidopsis thaliana chromosome III BAC... 38 8.8
19gb|AY099616.1| Arabidopsis thaliana unknown protein (At3g06430) ... 38 8.8
20ref|XM_682668.1| PREDICTED: Danio rerio similar to calcium chann... 38 8.8
21ref|XM_703791.1| PREDICTED: Danio rerio similar to calcium chann... 38 8.8
22gb|BT006618.1| Arabidopsis thaliana At3g06430 mRNA, complete cds 38 8.8 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  127 bits (64), Expect = 1e-26
 Identities = 127/147 (86%), Gaps = 1/147 (0%)
 Strand = Plus / Plus

                                                                            
Query: 34       tcaacattctcattggtgcttacgggaagaaacggntgtatgacaagnatgtctgcggtg 93
                |||||||||||||||| || || |||||||| ||| ||||||||||| |||||||| |||
Sbjct: 11023176 tcaacattctcattggcgcatatgggaagaagcggatgtatgacaag-atgtctgcagtg 11023234

                                                                            
Query: 94       atggaatacatgcgcaggctagcgtttccatggacgaccgccacttacaataacgtgatc 153
                ||||| |||||||||| | |||||||||||||||| || || || | ||| || ||||| 
Sbjct: 11023235 atggagtacatgcgcaagttagcgtttccatggaccactgcgacattcaacaatgtgatt 11023294

                                           
Query: 154      gaggcatttgctgaggcaggcgatgca 180
                |||||||| ||||| ||||||||||||
Sbjct: 11023295 gaggcattcgctgacgcaggcgatgca 11023321
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>gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, complete sequence
          Length = 167588

 Score =  127 bits (64), Expect = 1e-26
 Identities = 127/147 (86%), Gaps = 1/147 (0%)
 Strand = Plus / Minus

                                                                          
Query: 34     tcaacattctcattggtgcttacgggaagaaacggntgtatgacaagnatgtctgcggtg 93
              |||||||||||||||| || || |||||||| ||| ||||||||||| |||||||| |||
Sbjct: 109946 tcaacattctcattggcgcatatgggaagaagcggatgtatgacaag-atgtctgcagtg 109888

                                                                          
Query: 94     atggaatacatgcgcaggctagcgtttccatggacgaccgccacttacaataacgtgatc 153
              ||||| |||||||||| | |||||||||||||||| || || || | ||| || ||||| 
Sbjct: 109887 atggagtacatgcgcaagttagcgtttccatggaccactgcgacattcaacaatgtgatt 109828

                                         
Query: 154    gaggcatttgctgaggcaggcgatgca 180
              |||||||| ||||| ||||||||||||
Sbjct: 109827 gaggcattcgctgacgcaggcgatgca 109801
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  127 bits (64), Expect = 1e-26
 Identities = 127/147 (86%), Gaps = 1/147 (0%)
 Strand = Plus / Plus

                                                                            
Query: 34       tcaacattctcattggtgcttacgggaagaaacggntgtatgacaagnatgtctgcggtg 93
                |||||||||||||||| || || |||||||| ||| ||||||||||| |||||||| |||
Sbjct: 11019939 tcaacattctcattggcgcatatgggaagaagcggatgtatgacaag-atgtctgcagtg 11019997

                                                                            
Query: 94       atggaatacatgcgcaggctagcgtttccatggacgaccgccacttacaataacgtgatc 153
                ||||| |||||||||| | |||||||||||||||| || || || | ||| || ||||| 
Sbjct: 11019998 atggagtacatgcgcaagttagcgtttccatggaccactgcgacattcaacaatgtgatt 11020057

                                           
Query: 154      gaggcatttgctgaggcaggcgatgca 180
                |||||||| ||||| ||||||||||||
Sbjct: 11020058 gaggcattcgctgacgcaggcgatgca 11020084
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>dbj|AK111624.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108I11, full
            insert sequence
          Length = 3398

 Score =  127 bits (64), Expect = 1e-26
 Identities = 127/147 (86%), Gaps = 1/147 (0%)
 Strand = Plus / Plus

                                                                        
Query: 34   tcaacattctcattggtgcttacgggaagaaacggntgtatgacaagnatgtctgcggtg 93
            |||||||||||||||| || || |||||||| ||| ||||||||||| |||||||| |||
Sbjct: 1015 tcaacattctcattggcgcatatgggaagaagcggatgtatgacaag-atgtctgcagtg 1073

                                                                        
Query: 94   atggaatacatgcgcaggctagcgtttccatggacgaccgccacttacaataacgtgatc 153
            ||||| |||||||||| | |||||||||||||||| || || || | ||| || ||||| 
Sbjct: 1074 atggagtacatgcgcaagttagcgtttccatggaccactgcgacattcaacaatgtgatt 1133

                                       
Query: 154  gaggcatttgctgaggcaggcgatgca 180
            |||||||| ||||| ||||||||||||
Sbjct: 1134 gaggcattcgctgacgcaggcgatgca 1160
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>dbj|AK111530.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013024C10, full
            insert sequence
          Length = 2335

 Score =  127 bits (64), Expect = 1e-26
 Identities = 127/147 (86%), Gaps = 1/147 (0%)
 Strand = Plus / Plus

                                                                        
Query: 34   tcaacattctcattggtgcttacgggaagaaacggntgtatgacaagnatgtctgcggtg 93
            |||||||||||||||| || || |||||||| ||| ||||||||||| |||||||| |||
Sbjct: 1011 tcaacattctcattggcgcatatgggaagaagcggatgtatgacaag-atgtctgcagtg 1069

                                                                        
Query: 94   atggaatacatgcgcaggctagcgtttccatggacgaccgccacttacaataacgtgatc 153
            ||||| |||||||||| | |||||||||||||||| || || || | ||| || ||||| 
Sbjct: 1070 atggagtacatgcgcaagttagcgtttccatggaccactgcgacattcaacaatgtgatt 1129

                                       
Query: 154  gaggcatttgctgaggcaggcgatgca 180
            |||||||| ||||| ||||||||||||
Sbjct: 1130 gaggcattcgctgacgcaggcgatgca 1156
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>dbj|AK106141.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-G09, full
            insert sequence
          Length = 1786

 Score =  127 bits (64), Expect = 1e-26
 Identities = 127/147 (86%), Gaps = 1/147 (0%)
 Strand = Plus / Plus

                                                                        
Query: 34   tcaacattctcattggtgcttacgggaagaaacggntgtatgacaagnatgtctgcggtg 93
            |||||||||||||||| || || |||||||| ||| ||||||||||| |||||||| |||
Sbjct: 1034 tcaacattctcattggcgcatatgggaagaagcggatgtatgacaag-atgtctgcagtg 1092

                                                                        
Query: 94   atggaatacatgcgcaggctagcgtttccatggacgaccgccacttacaataacgtgatc 153
            ||||| |||||||||| | |||||||||||||||| || || || | ||| || ||||| 
Sbjct: 1093 atggagtacatgcgcaagttagcgtttccatggaccactgcgacattcaacaatgtgatt 1152

                                       
Query: 154  gaggcatttgctgaggcaggcgatgca 180
            |||||||| ||||| ||||||||||||
Sbjct: 1153 gaggcattcgctgacgcaggcgatgca 1179
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>dbj|AK098942.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043D15, full
            insert sequence
          Length = 1730

 Score =  127 bits (64), Expect = 1e-26
 Identities = 127/147 (86%), Gaps = 1/147 (0%)
 Strand = Plus / Plus

                                                                        
Query: 34   tcaacattctcattggtgcttacgggaagaaacggntgtatgacaagnatgtctgcggtg 93
            |||||||||||||||| || || |||||||| ||| ||||||||||| |||||||| |||
Sbjct: 1014 tcaacattctcattggcgcatatgggaagaagcggatgtatgacaag-atgtctgcagtg 1072

                                                                        
Query: 94   atggaatacatgcgcaggctagcgtttccatggacgaccgccacttacaataacgtgatc 153
            ||||| |||||||||| | |||||||||||||||| || || || | ||| || ||||| 
Sbjct: 1073 atggagtacatgcgcaagttagcgtttccatggaccactgcgacattcaacaatgtgatt 1132

                                       
Query: 154  gaggcatttgctgaggcaggcgatgca 180
            |||||||| ||||| ||||||||||||
Sbjct: 1133 gaggcattcgctgacgcaggcgatgca 1159
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>dbj|AK060922.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-H05, full
            insert sequence
          Length = 1786

 Score =  127 bits (64), Expect = 1e-26
 Identities = 127/147 (86%), Gaps = 1/147 (0%)
 Strand = Plus / Plus

                                                                        
Query: 34   tcaacattctcattggtgcttacgggaagaaacggntgtatgacaagnatgtctgcggtg 93
            |||||||||||||||| || || |||||||| ||| ||||||||||| |||||||| |||
Sbjct: 1034 tcaacattctcattggcgcatatgggaagaagcggatgtatgacaag-atgtctgcagtg 1092

                                                                        
Query: 94   atggaatacatgcgcaggctagcgtttccatggacgaccgccacttacaataacgtgatc 153
            ||||| |||||||||| | |||||||||||||||| || || || | ||| || ||||| 
Sbjct: 1093 atggagtacatgcgcaagttagcgtttccatggaccactgcgacattcaacaatgtgatt 1152

                                       
Query: 154  gaggcatttgctgaggcaggcgatgca 180
            |||||||| ||||| ||||||||||||
Sbjct: 1153 gaggcattcgctgacgcaggcgatgca 1179
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>gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0042B10, from chromosome 3, complete sequence
          Length = 144205

 Score =  127 bits (64), Expect = 1e-26
 Identities = 127/147 (86%), Gaps = 1/147 (0%)
 Strand = Plus / Plus

                                                                         
Query: 34    tcaacattctcattggtgcttacgggaagaaacggntgtatgacaagnatgtctgcggtg 93
             |||||||||||||||| || || |||||||| ||| ||||||||||| |||||||| |||
Sbjct: 66661 tcaacattctcattggcgcatatgggaagaagcggatgtatgacaag-atgtctgcagtg 66719

                                                                         
Query: 94    atggaatacatgcgcaggctagcgtttccatggacgaccgccacttacaataacgtgatc 153
             ||||| |||||||||| | |||||||||||||||| || || || | ||| || ||||| 
Sbjct: 66720 atggagtacatgcgcaagttagcgtttccatggaccactgcgacattcaacaatgtgatt 66779

                                        
Query: 154   gaggcatttgctgaggcaggcgatgca 180
             |||||||| ||||| ||||||||||||
Sbjct: 66780 gaggcattcgctgacgcaggcgatgca 66806
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>gb|AY278988.1| Zea mays PPR2 (ppr2) gene, complete cds; nuclear gene for chloroplast
            product
          Length = 2781

 Score = 91.7 bits (46), Expect = 7e-16
 Identities = 118/141 (83%), Gaps = 1/141 (0%)
 Strand = Plus / Plus

                                                                        
Query: 36   aacattctcattggtgcttacgggaagaaacggntgtatgacaagnatgtctgcggtgat 95
            ||||| || ||||| || |||||||||   ||| ||||||||||| ||||| || || ||
Sbjct: 1962 aacatcctgattggcgcctacgggaagcggcggatgtatgacaag-atgtccgcagtcat 2020

                                                                        
Query: 96   ggaatacatgcgcaggctagcgtttccatggacgaccgccacttacaataacgtgatcga 155
            |||  ||||||||| ||| ||||| || ||||||||||| || ||||| |||||||||||
Sbjct: 2021 ggagcacatgcgcaagctcgcgttcccgtggacgaccgcgacgtacaacaacgtgatcga 2080

                                 
Query: 156  ggcatttgctgaggcaggcga 176
             |||||||||||||| |||||
Sbjct: 2081 agcatttgctgaggccggcga 2101
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>gb|AY110093.1| Zea mays CL15341_1 mRNA sequence
          Length = 850

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 99/120 (82%), Gaps = 1/120 (0%)
 Strand = Plus / Minus

                                                                       
Query: 36  aacattctcattggtgcttacgggaagaaacggntgtatgacaagnatgtctgcggtgat 95
           ||||| || ||||| || |||||||||   ||| |||| |||||| ||||| ||||| ||
Sbjct: 498 aacatcctgattggcgcctacgggaagcggcggatgtacgacaag-atgtccgcggtcat 440

                                                                       
Query: 96  ggaatacatgcgcaggctagcgtttccatggacgaccgccacttacaataacgtgatcga 155
           |||  ||||||||| ||| ||||| || ||||||||||| || ||||| |||||||||||
Sbjct: 439 ggagcacatgcgcaagctcgcgttcccgtggacgaccgcgacgtacaacaacgtgatcga 380
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>gb|AC174352.7| Medicago truncatula clone mth2-7o1, complete sequence
          Length = 121626

 Score = 52.0 bits (26), Expect = 6e-04
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                         
Query: 118   tttccatggacgaccgccacttacaataacgtgatcgaggcatttgctgaggcaggcgat 177
             ||||||||||| ||| | ||||| || || ||||| ||||||||||| |||||||| |||
Sbjct: 77649 tttccatggacaacctctacttataacaatgtgattgaggcatttgcagaggcaggtgat 77708

               
Query: 178   gc 179
             ||
Sbjct: 77709 gc 77710
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>gb|AC102696.6| Mus musculus chromosome 7, clone RP24-112I14, complete sequence
          Length = 155408

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     caacattctcattggtgctt 54
              ||||||||||||||||||||
Sbjct: 148012 caacattctcattggtgctt 147993
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>gb|AC160535.3| Mus musculus chromosome 7, clone RP24-298A23, complete sequence
          Length = 163688

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     caacattctcattggtgctt 54
              ||||||||||||||||||||
Sbjct: 118296 caacattctcattggtgctt 118315
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>ref|NM_111518.4| Arabidopsis thaliana EMB2750 AT3G06430 (EMB2750) mRNA, complete cds
          Length = 1769

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                               
Query: 94   atggaatacatgcgcaggctagcgtttccatggac 128
            |||||||||||||| | ||||| |||||| |||||
Sbjct: 1029 atggaatacatgcgaaagctagagtttccgtggac 1063
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>emb|CR376775.7| Zebrafish DNA sequence from clone CH211-197C5 in linkage group 23,
              complete sequence
          Length = 196846

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 44     cattggtgcttacgggaagaaac 66
              ||||||||||||| |||||||||
Sbjct: 153809 cattggtgcttactggaagaaac 153831
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>emb|CR936261.8| Zebrafish DNA sequence from clone DKEY-207A6 in linkage group 5,
             complete sequence
          Length = 106678

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 44    cattggtgcttacgggaagaaac 66
             ||||||||||||| |||||||||
Sbjct: 25103 cattggtgcttactggaagaaac 25125
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>gb|AC011623.5|ATAC011623 Arabidopsis thaliana chromosome III BAC F24P17 genomic sequence,
             complete sequence
          Length = 86022

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                                
Query: 94    atggaatacatgcgcaggctagcgtttccatggac 128
             |||||||||||||| | ||||| |||||| |||||
Sbjct: 35147 atggaatacatgcgaaagctagagtttccgtggac 35181
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>gb|AY099616.1| Arabidopsis thaliana unknown protein (At3g06430) mRNA, complete cds
          Length = 1658

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                               
Query: 94   atggaatacatgcgcaggctagcgtttccatggac 128
            |||||||||||||| | ||||| |||||| |||||
Sbjct: 1029 atggaatacatgcgaaagctagagtttccgtggac 1063
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>ref|XM_682668.1| PREDICTED: Danio rerio similar to calcium channel beta3 subunit,
           transcript variant 1 (LOC565158), mRNA
          Length = 1904

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 44  cattggtgcttacgggaagaaac 66
           ||||||||||||| |||||||||
Sbjct: 197 cattggtgcttactggaagaaac 175
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>ref|XM_703791.1| PREDICTED: Danio rerio similar to calcium channel beta3 subunit,
           transcript variant 2 (LOC565158), mRNA
          Length = 1886

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 44  cattggtgcttacgggaagaaac 66
           ||||||||||||| |||||||||
Sbjct: 197 cattggtgcttactggaagaaac 175
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>gb|BT006618.1| Arabidopsis thaliana At3g06430 mRNA, complete cds
          Length = 1461

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                               
Query: 94   atggaatacatgcgcaggctagcgtttccatggac 128
            |||||||||||||| | ||||| |||||| |||||
Sbjct: 970  atggaatacatgcgaaagctagagtttccgtggac 1004


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,538,327
Number of Sequences: 3902068
Number of extensions: 1538327
Number of successful extensions: 60367
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60306
Number of HSP's gapped (non-prelim): 51
length of query: 180
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 158
effective length of database: 17,147,199,772
effective search space: 2709257563976
effective search space used: 2709257563976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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