ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6g03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473876.1| Oryza sativa (japonica cultivar-group), predic... 276 4e-71
2dbj|AK073265.1| Oryza sativa (japonica cultivar-group) cDNA clon... 276 4e-71
3emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4,... 212 5e-52
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 212 5e-52
5emb|Y13190.1|HVWL5MRNA Hordeum vulgare mRNA for hypothetical pro... 127 2e-26
6gb|AY105797.1| Zea mays PCO117545 mRNA sequence 127 2e-26
7gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 1.0
8ref|XM_570061.1| Cryptococcus neoformans var. neoformans JEC21 h... 42 1.0
9gb|AC012175.7| Homo sapiens chromosome 16 clone RP11-19H6, compl... 42 1.0
10emb|AL807740.6| Human DNA sequence from clone RP11-203E14 on chr... 40 4.1
11emb|AL591463.7| Human DNA sequence from clone RP11-275A6 on chro... 40 4.1
12emb|AL121588.24|HSDJ54G6 Human DNA sequence from clone RP1-54G6 ... 40 4.1
13gb|AC108358.3| Homo sapiens X BAC RP11-420H7 (Roswell Park Cance... 40 4.1
14gb|AC108517.3| Homo sapiens BAC clone RP11-622J8 from 4, complet... 40 4.1
15gb|AC105269.2| Homo sapiens chromosome 1 clone RP4-788P17, compl... 40 4.1
16dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
17gb|AC078988.18| Homo sapiens X BAC RP11-169J21 (Roswell Park Can... 40 4.1
18dbj|AP003545.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
19emb|CT572983.7| Mouse DNA sequence from clone RP23-110N1 on chro... 40 4.1 
>ref|XM_473876.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 900

 Score =  276 bits (139), Expect = 4e-71
 Identities = 236/270 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaaattcatgtgnctgctgctaaggcaggtgttgatagtatcacgagaacactggctct 60
           ||||||||||||  ||||||||||||| || ||||||||||| || ||| || |||||||
Sbjct: 498 ccaaattcatgtctctgctgctaaggcgggcgttgatagtataacaagatcattggctct 557

                                                                       
Query: 61  ggaatggnnaacagattatgaaatcagggtcaatggaattgcaccaggaccaatcggagg 120
           |||||||  |||||||||||| |||||||||||||||||||||||||| ||||| | |||
Sbjct: 558 ggaatggggaacagattatgacatcagggtcaatggaattgcaccagggccaattgaagg 617

                                                                       
Query: 121 cactccaggactgaggaagcttgcacctgatgaaatgggcaaggggaaaagggaaatgat 180
           |||||||||| ||||||||||||||||||| ||||||| ||||||||   ||||||| ||
Sbjct: 618 cactccaggaatgaggaagcttgcacctgaggaaatggccaaggggagtcgggaaataat 677

                                                                       
Query: 181 gcctttatttaagttgggggagacacggnacattgcaatggccgcgctctatcttgcttc 240
           |||||||||||||||||| || | | || |||| || ||||| || || || ||||||||
Sbjct: 678 gcctttatttaagttgggtgaaaaatgggacatagctatggctgcactttaccttgcttc 737

                                         
Query: 241 tgatgcangcaaatatgtaaatgggactac 270
           ||||||| | ||||||||||||||||||||
Sbjct: 738 tgatgcaggaaaatatgtaaatgggactac 767
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>dbj|AK073265.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025B16, full
            insert sequence
          Length = 1364

 Score =  276 bits (139), Expect = 4e-71
 Identities = 236/270 (87%)
 Strand = Plus / Plus

                                                                        
Query: 1    ccaaattcatgtgnctgctgctaaggcaggtgttgatagtatcacgagaacactggctct 60
            ||||||||||||  ||||||||||||| || ||||||||||| || ||| || |||||||
Sbjct: 741  ccaaattcatgtctctgctgctaaggcgggcgttgatagtataacaagatcattggctct 800

                                                                        
Query: 61   ggaatggnnaacagattatgaaatcagggtcaatggaattgcaccaggaccaatcggagg 120
            |||||||  |||||||||||| |||||||||||||||||||||||||| ||||| | |||
Sbjct: 801  ggaatggggaacagattatgacatcagggtcaatggaattgcaccagggccaattgaagg 860

                                                                        
Query: 121  cactccaggactgaggaagcttgcacctgatgaaatgggcaaggggaaaagggaaatgat 180
            |||||||||| ||||||||||||||||||| ||||||| ||||||||   ||||||| ||
Sbjct: 861  cactccaggaatgaggaagcttgcacctgaggaaatggccaaggggagtcgggaaataat 920

                                                                        
Query: 181  gcctttatttaagttgggggagacacggnacattgcaatggccgcgctctatcttgcttc 240
            |||||||||||||||||| || | | || |||| || ||||| || || || ||||||||
Sbjct: 921  gcctttatttaagttgggtgaaaaatgggacatagctatggctgcactttaccttgcttc 980

                                          
Query: 241  tgatgcangcaaatatgtaaatgggactac 270
            ||||||| | ||||||||||||||||||||
Sbjct: 981  tgatgcaggaaaatatgtaaatgggactac 1010
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>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17,
              complete sequence
          Length = 160484

 Score =  212 bits (107), Expect = 5e-52
 Identities = 188/216 (87%)
 Strand = Plus / Plus

                                                                          
Query: 32     gttgatagtatcacgagaacactggctctggaatggnnaacagattatgaaatcagggtc 91
              ||||||||||| || ||| || ||||||||||||||  |||||||||||| |||||||||
Sbjct: 156653 gttgatagtataacaagatcattggctctggaatggggaacagattatgacatcagggtc 156712

                                                                          
Query: 92     aatggaattgcaccaggaccaatcggaggcactccaggactgaggaagcttgcacctgat 151
              ||||||||||||||||| ||||| | ||||||||||||| ||||||||||||||||||| 
Sbjct: 156713 aatggaattgcaccagggccaattgaaggcactccaggaatgaggaagcttgcacctgag 156772

                                                                          
Query: 152    gaaatgggcaaggggaaaagggaaatgatgcctttatttaagttgggggagacacggnac 211
              ||||||| ||||||||   ||||||| |||||||||||||||||||| || | | || ||
Sbjct: 156773 gaaatggccaaggggagtcgggaaataatgcctttatttaagttgggtgaaaaatgggac 156832

                                                  
Query: 212    attgcaatggccgcgctctatcttgcttctgatgca 247
              || || ||||| || || || |||||||||||||||
Sbjct: 156833 atagctatggctgcactttaccttgcttctgatgca 156868



 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 251    aaatatgtaaatgggactac 270
              ||||||||||||||||||||
Sbjct: 157136 aaatatgtaaatgggactac 157155
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  212 bits (107), Expect = 5e-52
 Identities = 188/216 (87%)
 Strand = Plus / Plus

                                                                            
Query: 32       gttgatagtatcacgagaacactggctctggaatggnnaacagattatgaaatcagggtc 91
                ||||||||||| || ||| || ||||||||||||||  |||||||||||| |||||||||
Sbjct: 31174572 gttgatagtataacaagatcattggctctggaatggggaacagattatgacatcagggtc 31174631

                                                                            
Query: 92       aatggaattgcaccaggaccaatcggaggcactccaggactgaggaagcttgcacctgat 151
                ||||||||||||||||| ||||| | ||||||||||||| ||||||||||||||||||| 
Sbjct: 31174632 aatggaattgcaccagggccaattgaaggcactccaggaatgaggaagcttgcacctgag 31174691

                                                                            
Query: 152      gaaatgggcaaggggaaaagggaaatgatgcctttatttaagttgggggagacacggnac 211
                ||||||| ||||||||   ||||||| |||||||||||||||||||| || | | || ||
Sbjct: 31174692 gaaatggccaaggggagtcgggaaataatgcctttatttaagttgggtgaaaaatgggac 31174751

                                                    
Query: 212      attgcaatggccgcgctctatcttgcttctgatgca 247
                || || ||||| || || || |||||||||||||||
Sbjct: 31174752 atagctatggctgcactttaccttgcttctgatgca 31174787



 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 251      aaatatgtaaatgggactac 270
                ||||||||||||||||||||
Sbjct: 31175055 aaatatgtaaatgggactac 31175074
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>emb|Y13190.1|HVWL5MRNA Hordeum vulgare mRNA for hypothetical protein, partial, clone WL5
          Length = 335

 Score =  127 bits (64), Expect = 2e-26
 Identities = 80/88 (90%)
 Strand = Plus / Plus

                                                                       
Query: 205 acggnacattgcaatggccgcgctctatcttgcttctgatgcangcaaatatgtaaatgg 264
           |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1   acgggacattgcaatggccgcgctctatcttgcttctgatgcaggcaaatatgtaaatgg 60

                                       
Query: 265 gactacnctggnggnnnatgganggctt 292
           |||||| |||| ||   ||||| |||||
Sbjct: 61  gactacgctggtggtcgatggagggctt 88
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>gb|AY105797.1| Zea mays PCO117545 mRNA sequence
          Length = 961

 Score =  127 bits (64), Expect = 2e-26
 Identities = 139/165 (84%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaaattcatgtgnctgctgctaaggcaggtgttgatagtatcacgagaacactggctct 60
           |||||| |||||  ||||||||||||| || |||||||| ||||| ||| ||||||||||
Sbjct: 583 ccaaatccatgtctctgctgctaaggctggggttgatagcatcacaagatcactggctct 642

                                                                       
Query: 61  ggaatggnnaacagattatgaaatcagggtcaatggaattgcaccaggaccaatcggagg 120
           ||| |||  |||||||||||| || || ||||| || |||||||| ||||||||   || 
Sbjct: 643 ggagtggggaacagattatgacattagagtcaacgggattgcacctggaccaattcaaga 702

                                                        
Query: 121 cactccaggactgaggaagcttgcacctgatgaaatgggcaaggg 165
           ||| || || |||||||||||||||||||| |||||| |||||||
Sbjct: 703 caccccggggctgaggaagcttgcacctgaagaaatgagcaaggg 747



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 75/88 (85%)
 Strand = Plus / Plus

                                                                       
Query: 188 tttaagttgggggagacacggnacattgcaatggccgcgctctatcttgcttctgatgca 247
           ||||| || |||||||  ||| |||| |||||||| |||||||| ||  |||||||||||
Sbjct: 767 tttaaatttggggagaagcgggacatagcaatggctgcgctctacctgacttctgatgca 826

                                       
Query: 248 ngcaaatatgtaaatgggactacnctgg 275
            ||||||||||||||||||| || ||||
Sbjct: 827 ggcaaatatgtaaatgggacaacactgg 854
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>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete
               sequence
          Length = 1783081

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 149     gatgaaatgggcaaggggaaa 169
               |||||||||||||||||||||
Sbjct: 1392043 gatgaaatgggcaaggggaaa 1392063
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>ref|XM_570061.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CND05100) partial mRNA
          Length = 1112

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 149 gatgaaatgggcaaggggaaa 169
           |||||||||||||||||||||
Sbjct: 621 gatgaaatgggcaaggggaaa 601
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>gb|AC012175.7| Homo sapiens chromosome 16 clone RP11-19H6, complete sequence
          Length = 180634

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 152   gaaatgggcaaggggaaaagg 172
             |||||||||||||||||||||
Sbjct: 36721 gaaatgggcaaggggaaaagg 36741
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>emb|AL807740.6| Human DNA sequence from clone RP11-203E14 on chromosome X, complete
             sequence
          Length = 166548

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    ctgctgctaaggcaggtgtt 34
             ||||||||||||||||||||
Sbjct: 50548 ctgctgctaaggcaggtgtt 50529
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>emb|AL591463.7| Human DNA sequence from clone RP11-275A6 on chromosome 1 Contains the
             3' end of a novel gene and a novel gene, complete sequence
          Length = 186710

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   atgaaatgggcaaggggaaa 169
             ||||||||||||||||||||
Sbjct: 43985 atgaaatgggcaaggggaaa 44004
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>emb|AL121588.24|HSDJ54G6 Human DNA sequence from clone RP1-54G6 on chromosome 20 Contains an
            autophagy Apg3p/Aut1p-like (APG3) pseudogene, complete
            sequence
          Length = 84871

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 46   gagaacactggctctggaat 65
            ||||||||||||||||||||
Sbjct: 8073 gagaacactggctctggaat 8092
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>gb|AC108358.3| Homo sapiens X BAC RP11-420H7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 43632

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    ggaattgcaccaggaccaat 114
             ||||||||||||||||||||
Sbjct: 43354 ggaattgcaccaggaccaat 43373
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>gb|AC108517.3| Homo sapiens BAC clone RP11-622J8 from 4, complete sequence
          Length = 128233

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 249    gcaaatatgtaaatgggact 268
              ||||||||||||||||||||
Sbjct: 117407 gcaaatatgtaaatgggact 117426
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>gb|AC105269.2| Homo sapiens chromosome 1 clone RP4-788P17, complete sequence
          Length = 120910

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   atgaaatgggcaaggggaaa 169
             ||||||||||||||||||||
Sbjct: 94844 atgaaatgggcaaggggaaa 94863
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 155      atgggcaaggggaaaaggga 174
                ||||||||||||||||||||
Sbjct: 15395066 atgggcaaggggaaaaggga 15395047
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>gb|AC078988.18| Homo sapiens X BAC RP11-169J21 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 169849

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     ggaattgcaccaggaccaat 114
              ||||||||||||||||||||
Sbjct: 168132 ggaattgcaccaggaccaat 168113
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>dbj|AP003545.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0613F06
          Length = 184289

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   atgggcaaggggaaaaggga 174
             ||||||||||||||||||||
Sbjct: 62581 atgggcaaggggaaaaggga 62562
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>emb|CT572983.7| Mouse DNA sequence from clone RP23-110N1 on chromosome 14, complete
              sequence
          Length = 218673

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    gggaaaagggaaatgatgcc 183
              ||||||||||||||||||||
Sbjct: 115020 gggaaaagggaaatgatgcc 115001


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,151,512
Number of Sequences: 3902068
Number of extensions: 2151512
Number of successful extensions: 37146
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37100
Number of HSP's gapped (non-prelim): 45
length of query: 311
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 289
effective length of database: 17,147,199,772
effective search space: 4955540734108
effective search space used: 4955540734108
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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