ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags6g01 |
|---|---|
| Clone Library Name | barley_pub |
>MST2_DROHY (Q08696) Axoneme-associated protein mst101(2)| Length = 1391 Score = 46.2 bits (108), Expect = 7e-05 Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 12/154 (7%) Frame = +2 Query: 35 QGNDSCDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQ--- 205 +G C + K A KK+C E +E ++ CE + ++ A K+QC + Sbjct: 963 KGKKKCKKLGKKSKRAAEKKKCA-EAAKKEKEAATKKKCEERAKKQKEAAEKKQCEERAK 1021 Query: 206 ---------QCMRYGLNLXXXXXXXXIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQ 358 QC L E + E +Q C+ + + K A KKQ Sbjct: 1022 KLKEAAEQKQCEERAKKLKEAAEKKQCEERAKKLKEAAEQK--QCEERAKKLKEAAEKKQ 1079 Query: 359 CVDECHRREHHHPSRAACERKCSHWRDPTRKERC 460 C +E ++E + CE + ++ K++C Sbjct: 1080 C-EERAKKEKEAAEKKQCEERAKKLKEAAEKKQC 1112 Score = 44.3 bits (103), Expect = 3e-04 Identities = 30/143 (20%), Positives = 56/143 (39%) Frame = +2 Query: 50 CDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLN 229 C+ + + K A KKQC +E +E + CE + ++ A K+QC ++ + Sbjct: 1064 CEERAKKLKEAAEKKQC-EERAKKEKEAAEKKQCEERAKKLKEAAEKKQCEERAKK---- 1118 Query: 230 LXXXXXXXXIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAA 409 E+ AE+ C+ + K A KK+C E ++E + Sbjct: 1119 ----------EKEAAEK--------KRCEEAAKREKEAAEKKKCA-EAAKKEKEATEKQK 1159 Query: 410 CERKCSHWRDPTRKERCVQTCMR 478 C ++ K++C + R Sbjct: 1160 CAEAAKKEKEAAEKKKCAEAAKR 1182 Score = 38.9 bits (89), Expect = 0.011 Identities = 28/150 (18%), Positives = 56/150 (37%) Frame = +2 Query: 29 DDQGNDSCDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQ 208 ++ +C + K KK+C +E ++E + CE+ ++ A K++C + Sbjct: 360 EEDEKKACKELAKKKKEADEKKKC-EEAANKEKKAAEKKKCEKAAKERKEAAEKKKCEE- 417 Query: 209 CMRYGLNLXXXXXXXXIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREH 388 A + E + C+ ++ K A KK+C E ++E Sbjct: 418 ---------------------AAKKEKEAAERKKCEELAKNIKKAAEKKKC-KEAAKKEK 455 Query: 389 HHPSRAACERKCSHWRDPTRKERCVQTCMR 478 R CE + K++C +T + Sbjct: 456 EAAERKKCEELAKKIKKAAEKKKCEETAKK 485 Score = 38.1 bits (87), Expect = 0.019 Identities = 27/143 (18%), Positives = 52/143 (36%) Frame = +2 Query: 50 CDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLN 229 C+ + K A KK+C +E +E R CE + A K++C + Sbjct: 575 CEKAAKERKEAAEKKKC-EEAAKKEKEVAERKKCEELAKKIKKAAEKKKCKE-------- 625 Query: 230 LXXXXXXXXIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAA 409 A + E + + C + K A KK+C + ++E + Sbjct: 626 --------------AAKKEKEAAEREKCGELAKKIKKAAEKKKC-KKLAKKEKETAEKKK 670 Query: 410 CERKCSHWRDPTRKERCVQTCMR 478 CE+ ++ K++C + + Sbjct: 671 CEKAAKKRKEAAEKKKCAEAAKK 693 Score = 35.4 bits (80), Expect = 0.12 Identities = 27/143 (18%), Positives = 52/143 (36%) Frame = +2 Query: 50 CDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLN 229 C + K A KK+C ++ + + CE+ ++ A K++C + + Sbjct: 511 CKKLAKKEKETAEKKKC-EKAAKKRKEAAEKKKCEKAAKKRKEAAEKKKCEKSAKK---- 565 Query: 230 LXXXXXXXXIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAA 409 R A E + C+ + K A KK+C +E ++E R Sbjct: 566 -----------RKEAAEKK-------KCEKAAKERKEAAEKKKC-EEAAKKEKEVAERKK 606 Query: 410 CERKCSHWRDPTRKERCVQTCMR 478 CE + K++C + + Sbjct: 607 CEELAKKIKKAAEKKKCKEAAKK 629 Score = 35.0 bits (79), Expect = 0.16 Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 8/151 (5%) Frame = +2 Query: 50 CDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLN 229 C+ + K A KK+C E +E + CE ++ A +++C + + Sbjct: 671 CEKAAKKRKEAAEKKKCA-EAAKKEKEAAEKKKCEEAAKKEKEAAERKKCEELAKKIKKA 729 Query: 230 LXXXXXXXXIERPHAEEVEVDDQSNDSCDH------KCQH--HKVPARKKQCVDECHRRE 385 ++ A E + N KC+ K A KK+C E ++E Sbjct: 730 AEKKKCKKLAKKKKAGEKNKLKKGNKKGKKALKEKKKCRELAKKKAAEKKKC-KEAAKKE 788 Query: 386 HHHPSRAACERKCSHWRDPTRKERCVQTCMR 478 + CE+ ++ K++C +T + Sbjct: 789 KEAAEKKKCEKTAKKRKEEAEKKKCEKTAKK 819 Score = 30.8 bits (68), Expect = 3.0 Identities = 25/135 (18%), Positives = 51/135 (37%) Frame = +2 Query: 74 KVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLNLXXXXXXX 253 K A KK+C ++ +A C+ ++ K++C + + Sbjct: 343 KEEAEKKKCAALAKKQKEEDEKKA-CKELAKKKKEADEKKKCEEAANK------------ 389 Query: 254 XIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHW 433 E+ AE+ + C+ + K A KK+C +E ++E R CE + Sbjct: 390 --EKKAAEKKK--------CEKAAKERKEAAEKKKC-EEAAKKEKEAAERKKCEELAKNI 438 Query: 434 RDPTRKERCVQTCMR 478 + K++C + + Sbjct: 439 KKAAEKKKCKEAAKK 453
>VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A)| Length = 605 Score = 45.4 bits (106), Expect = 1e-04 Identities = 39/149 (26%), Positives = 59/149 (39%), Gaps = 4/149 (2%) Frame = +2 Query: 20 RPVDD--QGNDSCDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKE 193 R DD Q + C +CQ + R + D+C R E + DP R+ Sbjct: 32 RSEDDPQQRYEDCRKRCQ---LETRGQTEQDKCEDRSETQLK----EEQQRDGEDPQRRY 84 Query: 194 Q-CVQQCMRYGLNLXXXXXXXXIERPHAEEVEVDDQSNDSCDHKCQ-HHKVPARKKQCVD 367 Q C Q C + L E+ ++ + D+ C +CQ + P RK+QCV Sbjct: 85 QDCRQHCQQEERRLRPHCEQSCREQYEKQQQQQPDKQFKECQQRCQWQEQRPERKQQCVK 144 Query: 368 ECHRREHHHPSRAACERKCSHWRDPTRKE 454 EC + P + E K WR+ +E Sbjct: 145 ECREQYQEDPWKGERENK---WREEEEEE 170 Score = 30.8 bits (68), Expect = 3.0 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 7/61 (11%) Frame = +2 Query: 311 CDHKCQHHKVPAR---KKQCVDECHRREHHHPSRA--ACERKCSHWRD--PTRKERCVQT 469 C CQ + R ++ C ++ +++ P + C+++C W++ P RK++CV+ Sbjct: 87 CRQHCQQEERRLRPHCEQSCREQYEKQQQQQPDKQFKECQQRCQ-WQEQRPERKQQCVKE 145 Query: 470 C 472 C Sbjct: 146 C 146
>VCLB_GOSHI (P09801) Vicilin C72 precursor (Alpha-globulin B)| Length = 588 Score = 43.9 bits (102), Expect = 3e-04 Identities = 31/127 (24%), Positives = 46/127 (36%), Gaps = 13/127 (10%) Frame = +2 Query: 80 PARKKQCVDECHSREHHHPSRASCERKCSHW------------RDPARK-EQCVQQCMRY 220 P R + C C + CE C DP R+ E+C Q+C + Sbjct: 38 PKRYEDCRRRCEWDTRGQKEQQQCEESCKSQYGEKDQQQRHRPEDPQRRYEECQQECRQQ 97 Query: 221 GLNLXXXXXXXXIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPS 400 ++R E+ + Q + H Q + P RK+QCV EC R +P Sbjct: 98 EERQRPQCQQRCLKRFEQEQQQSQRQFQECQQHCHQQEQRPERKQQCVRECRERYQENPW 157 Query: 401 RAACERK 421 R E + Sbjct: 158 RREREEE 164 Score = 34.7 bits (78), Expect = 0.21 Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 6/114 (5%) Frame = +2 Query: 149 CERKCSHWRDPARKEQCVQQCMRYGLNLXXXXXXXXIERPHAEEVEVDDQSNDSCDHKCQ 328 C R+C W +KEQ QQC + RP E + + C +C+ Sbjct: 44 CRRRCE-WDTRGQKEQ--QQCEESCKSQYGEKDQQQRHRP-----EDPQRRYEECQQECR 95 Query: 329 HHKVPARKKQCVDECHRREHHHPSRAA-----CERKCSHWRD-PTRKERCVQTC 472 + ++ QC C +R ++ C++ C P RK++CV+ C Sbjct: 96 QQE-ERQRPQCQQRCLKRFEQEQQQSQRQFQECQQHCHQQEQRPERKQQCVREC 148 Score = 30.4 bits (67), Expect = 3.9 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%) Frame = +2 Query: 59 KCQHH-----KVPARKKQCVDECHSREHHHPSRASCERK 160 +CQ H + P RK+QCV EC R +P R E + Sbjct: 126 ECQQHCHQQEQRPERKQQCVRECRERYQENPWRREREEE 164
>MST1_DROHY (Q08695) Axoneme-associated protein mst101(1)| Length = 344 Score = 39.7 bits (91), Expect = 0.006 Identities = 26/146 (17%), Positives = 53/146 (36%), Gaps = 3/146 (2%) Frame = +2 Query: 50 CDIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLN 229 C + K A KK+C E +E + C ++ A K++C + + Sbjct: 109 CAEAAKKEKEAAEKKKCA-EAAKKEKEAAEKKKCAEAAKKEKEAAEKKKCAEAAKKEKEA 167 Query: 230 LXXXXXXXXIERPHAEEVEVDDQS---NDSCDHKCQHHKVPARKKQCVDECHRREHHHPS 400 ++ E+ +Q C + K A KK+C +E ++E Sbjct: 168 AEKKKCAEAAQKKKCAELAKKEQEAAEKKKCAEAAKKEKEAAEKKKC-EERAKKEKEAAE 226 Query: 401 RAACERKCSHWRDPTRKERCVQTCMR 478 + CE + ++ K++C + + Sbjct: 227 KKKCEERAKKEKEAAEKKKCAEAAKK 252
>VCL_THECC (Q43358) Vicilin precursor| Length = 525 Score = 32.3 bits (72), Expect = 1.0 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 1/104 (0%) Frame = +2 Query: 149 CERKC-SHWRDPARKEQCVQQCMRYGLNLXXXXXXXXIERPHAEEVEVDDQSNDSCDHKC 325 C+R+C S + +EQC Q+C ER + E+ + Sbjct: 45 CQRRCESEATEEREQEQCEQRC----------------EREYKEQ------------QRQ 76 Query: 326 QHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKER 457 Q ++ + +QC C ++ + C+RKC W +ER Sbjct: 77 QEEELQRQYQQCQGRCQEQQQGQREQQQCQRKC--WEQYKEQER 118
>TICN1_MOUSE (Q62288) Testican-1 precursor (SPOCK protein)| Length = 442 Score = 31.6 bits (70), Expect = 1.8 Identities = 32/125 (25%), Positives = 42/125 (33%), Gaps = 12/125 (9%) Frame = +2 Query: 32 DQGNDSC-DIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQC--- 199 D D C +KC HKV + C SR+H P + HW P+ +C Sbjct: 83 DPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLGPSNLVKCKPC 142 Query: 200 --VQQCMRYGLNLXXXXXXXXIERPHAEEVEVDDQSNDSCDHKC------QHHKVPARKK 355 Q M G + +E HA N CD C + K A K Sbjct: 143 PVAQSAMVCGSDGHTYTSKCKLEF-HA--CSTGKSLNSLCDGPCPCLPEPEPLKPKAEKS 199 Query: 356 QCVDE 370 C D+ Sbjct: 200 ACTDK 204
>GLCAP_SOYBN (P11827) Beta-conglycinin, alpha' chain precursor| Length = 639 Score = 30.8 bits (68), Expect = 3.0 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 13/113 (11%) Frame = +2 Query: 122 EHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLNLXXXXXXXXIERPHAEEVEVDDQS 301 E +PS C R C+ +D R + C +C + I RP + E + Q Sbjct: 29 EKQNPSHNKCLRSCNSEKDSYRNQACHARCNLLKVEEEEECEEGQIPRPRPQHPERERQQ 88 Query: 302 NDSCD-------------HKCQHHKVPARKKQCVDECHRREHHHPSRAACERK 421 + + Q H+ +++ E HR+E H + + E + Sbjct: 89 HGEKEEDEGEQPRPFPFPRPRQPHQEEEHEQKEEHEWHRKEEKHGGKGSEEEQ 141
>ATS20_HUMAN (P59510) ADAMTS-20 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 20) (ADAM-TS 20) (ADAM-TS20) Length = 1911 Score = 30.8 bits (68), Expect = 3.0 Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 1/125 (0%) Frame = +2 Query: 53 DIKCQHHKVPARKKQ-CVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRYGLN 229 D +C H +P+ Q C +C R ++ C +C CM+Y ++ Sbjct: 884 DKECDHLPLPSFVTQSCNTDCELRGMLLAKKSECSSQCGQGY-----RTLDIHCMKYSIH 938 Query: 230 LXXXXXXXXIERPHAEEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAA 409 + V+VDD H C P ++ C C H+ + Sbjct: 939 -------------EGQTVQVDD-------HYCGDQLKPPTQELCHGNCVFTRWHYSEWSQ 978 Query: 410 CERKC 424 C R C Sbjct: 979 CSRSC 983
>TICN1_HUMAN (Q08629) Testican-1 precursor (SPOCK protein)| Length = 439 Score = 30.8 bits (68), Expect = 3.0 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Frame = +2 Query: 32 DQGNDSC-DIKCQHHKVPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQC 199 D D C +KC HKV + C SR+H P + HW P+ +C Sbjct: 80 DPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAQKHWVGPSNLVKC 136
>STAR_DROME (P42519) Protein Star| Length = 597 Score = 30.4 bits (67), Expect = 3.9 Identities = 35/153 (22%), Positives = 44/153 (28%), Gaps = 19/153 (12%) Frame = +2 Query: 11 EVGRPVDDQGNDSCDIKCQHHKVPARKKQCVDECHSREHHHP--------------SRAS 148 E +P D G D D Q HK + HHH S S Sbjct: 124 ETRQPTKDCGTDETDHVQQRHK----NTMTTSATAASRHHHQDGGGGDQSDLSSVISSPS 179 Query: 149 CERKCSHWRDPARKEQCVQQ----CMRY-GLNLXXXXXXXXIERPHAEEVEVDDQSNDSC 313 S P R Q +QQ C + G+ I+ PH + Sbjct: 180 VSTVSSPLSTPTRLPQALQQQLHCCQKSTGMESRARTSPQQIQHPHRQH----------- 228 Query: 314 DHKCQHHKVPARKKQCVDECHRREHHHPSRAAC 412 H+ QHH H HHH + A C Sbjct: 229 -HQQQHH-------------HHHHHHHLTAAGC 247
>MTB1_BACSQ (Q9LAI2) Modification methylase BslI (EC 2.1.1.113) (N-4| cytosine-specific methyltransferase BslI) (M.BslI) Length = 912 Score = 30.4 bits (67), Expect = 3.9 Identities = 14/46 (30%), Positives = 24/46 (52%) Frame = -3 Query: 152 RKTPCLGDDAPGCGTRRRTVSSSPELYDVGT*CRTSRCPDHRRAGR 15 R+ PC P CG+ + +S PE+ + C++ CPD ++ R Sbjct: 466 RRIPC-----PSCGSLNISGNSYPEINNRSWECKSPYCPDRSKSNR 506
>MACA1_RHOOP (O84992) Maleylacetate reductase 1 (EC 1.3.1.32) (Maleylacetate| reductase I) Length = 357 Score = 30.0 bits (66), Expect = 5.1 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Frame = -3 Query: 206 AARTVPSLPGLSNGYTSSRKTPCLGDDAPGCGTRRRTVSSSPE--LYDV 66 AART L Y S TP LG+ G T R T++ PE +YDV Sbjct: 109 AARTGVDQVILPTTYAGSEVTPVLGETVEGRKTTRSTLAVLPETVIYDV 157
>VNCS_PAVPN (P18547) Noncapsid protein NS-1 (Nonstructural protein NS1)| Length = 660 Score = 29.6 bits (65), Expect = 6.7 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +3 Query: 315 TTSANIIKFRRGRSSAWTSATDGSIITRAGRLARGSVAI 431 TT A +I +RG ++W ATD + L +G V I Sbjct: 52 TTDAEMINLQRGAETSWDQATDMEWESEIDSLTKGQVLI 90
>PRG4_MOUSE (Q9JM99) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte| stimulating factor) (Superficial zone proteoglycan) [Contains: Proteoglycan-4 C-terminal part] Length = 1054 Score = 29.6 bits (65), Expect = 6.7 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Frame = +2 Query: 47 SCDIKCQHHK--VPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRY 220 +CD CQH+ P K+ C E SC+ +C R+ C QC +Y Sbjct: 45 NCDYNCQHYMECCPDFKRVCSPEL-----------SCKGRCFESFARGRECDCDSQCKQY 93 Query: 221 G 223 G Sbjct: 94 G 94
>PGCA_MOUSE (Q61282) Aggrecan core protein precursor (Cartilage-specific| proteoglycan core protein) (CSPCP) Length = 2132 Score = 29.3 bits (64), Expect = 8.7 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = -3 Query: 155 SRKTPCLGDDAPGCGTRRRTVSSSPELYDV 66 S +TPC+GD G R V S E YDV Sbjct: 549 SPRTPCVGDKDSSPGVRTYRVRPSSETYDV 578
>PRG4_HUMAN (Q92954) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte| stimulating factor) (Superficial zone proteoglycan) [Contains: Proteoglycan-4 C-terminal part] Length = 1404 Score = 29.3 bits (64), Expect = 8.7 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Frame = +2 Query: 47 SCDIKCQHHK--VPARKKQCVDECHSREHHHPSRASCERKCSHWRDPARKEQCVQQCMRY 220 +CD CQH+ P K+ C E SC+ +C + R+ C QC +Y Sbjct: 45 NCDYNCQHYMECCPDFKRVCTAEL-----------SCKGRCFESFERGRECDCDAQCKKY 93
>YITN_BACSU (O06749) Hypothetical protein yitN| Length = 122 Score = 29.3 bits (64), Expect = 8.7 Identities = 11/45 (24%), Positives = 22/45 (48%) Frame = -1 Query: 193 FLPCRVSPMATLPLARRPAWVMMLPAVALVDALFLPRRNFMMLAL 59 F P+ T P P W +L + + ALF P++++ ++ + Sbjct: 20 FFQALTKPIVTSPFVVIPTWGTLLVQIVIFAALFAPKKHWRLILI 64
>WSC2_YEAST (P53832) Cell wall integrity and stress response component 2| precursor Length = 503 Score = 29.3 bits (64), Expect = 8.7 Identities = 26/134 (19%), Positives = 42/134 (31%), Gaps = 4/134 (2%) Frame = -3 Query: 449 SLSGLSNGYTSSRKPPCSGDDAPVCGTRPRTASS----SPELYDVGTCGRTSRCSDXXXX 282 S + S TSS S + T+ T+SS S T +S + Sbjct: 127 SSTATSTSTTSSSSTSVSSKTSTKLDTKTSTSSSATHSSSSSSTTSTTTSSSETTTSSSS 186 Query: 281 XXXXXXXXXXXXXXXXXXXXRSACTAARTVPSLPGLSNGYTSSRKTPCLGDDAPGCGTRR 102 ++ + + T S S+ TSS + + T Sbjct: 187 SSSSSSTSTTSTTSTTSSTTSTSSSPSTTSSSTSASSSSETSSTQATSSSTTSTSSSTST 246 Query: 101 RTVSSSPELYDVGT 60 TV+S+P +GT Sbjct: 247 ATVTSTPSSTSIGT 260 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,092,410 Number of Sequences: 219361 Number of extensions: 1421667 Number of successful extensions: 4909 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4060 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4879 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
