>UFD1_HUMAN (Q92890) Ubiquitin fusion degradation protein 1 homolog (UB fusion|
           protein 1)
          Length = 343

 Score = 60.5 bits (145), Expect(2) = 7e-10
 Identities = 27/55 (49%), Positives = 39/55 (70%)
 Frame = +2

Query: 101 AVLETALRNHATLSENDVVMVNYGQLQYKLKVLELKPASSVSVLETDVEVDIEGP 265
           AVLE ALRN A L+  DV+ +NY +  Y+L+V+E KP  +VS++E D+ VD + P
Sbjct: 176 AVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAP 230



 Score = 21.6 bits (44), Expect(2) = 7e-10
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 9   IQVKYASLPKGTYAKLKPEGVGF 77
           +QV+  +L   TY+K +P+   F
Sbjct: 146 VQVESVNLQVATYSKFQPQSPDF 168

>UFD1_MOUSE (P70362) Ubiquitin fusion degradation protein 1 homolog (UB fusion|
           protein 1)
          Length = 307

 Score = 59.7 bits (143), Expect(2) = 1e-09
 Identities = 26/55 (47%), Positives = 39/55 (70%)
 Frame = +2

Query: 101 AVLETALRNHATLSENDVVMVNYGQLQYKLKVLELKPASSVSVLETDVEVDIEGP 265
           AVLE ALRN A ++  DV+ +NY +  Y+L+V+E KP  +VS++E D+ VD + P
Sbjct: 140 AVLENALRNFACMTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAP 194



 Score = 21.6 bits (44), Expect(2) = 1e-09
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 9   IQVKYASLPKGTYAKLKPEGVGF 77
           +QV+  +L   TY+K +P+   F
Sbjct: 110 VQVESVNLQVATYSKFQPQSPDF 132

>UFD1_CAEEL (Q19584) Ubiquitin fusion degradation protein 1 homolog (UB fusion|
           protein 1)
          Length = 342

 Score = 50.8 bits (120), Expect(2) = 3e-09
 Identities = 28/75 (37%), Positives = 45/75 (60%)
 Frame = +2

Query: 101 AVLETALRNHATLSENDVVMVNYGQLQYKLKVLELKPASSVSVLETDVEVDIEGPDSVFV 280
           AVLE  LR +A L++ND +  +Y     +  V++LKPA+SV ++E DV +D + P+  +V
Sbjct: 144 AVLEVELRKYACLTKNDRIPTSYAGQTLEFLVVDLKPANSVCIIECDVNLDFDPPEG-YV 202

Query: 281 NEENQHVLVPLETGK 325
            +  Q  + P  T K
Sbjct: 203 EQPRQ--VTPAVTAK 215



 Score = 29.3 bits (64), Expect(2) = 3e-09
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +3

Query: 9   IQVKYASLPKGTYAKLKPEGVGF 77
           I+++ A+LPK T+AKLKP  + F
Sbjct: 114 IRIESATLPKATFAKLKPMSLEF 136

>UFD1_DROME (Q9VTF9) Ubiquitin fusion degradation protein 1 homolog (UB fusion|
           protein 1)
          Length = 316

 Score = 58.5 bits (140), Expect = 9e-09
 Identities = 29/65 (44%), Positives = 41/65 (63%)
 Frame = +2

Query: 101 AVLETALRNHATLSENDVVMVNYGQLQYKLKVLELKPASSVSVLETDVEVDIEGPDSVFV 280
           AVLE ALRN A L+  DV+ + Y +  Y+L VLE KP ++VS++E D+ V+ E P     
Sbjct: 137 AVLENALRNFACLTRGDVIAIKYNKKVYELCVLETKPGNAVSIIECDMNVEFEAPVGYKD 196

Query: 281 NEENQ 295
           + E Q
Sbjct: 197 HSETQ 201

>UFD1_YEAST (P53044) Ubiquitin fusion degradation protein 1 (UB fusion protein|
           1) (Polymerase-interacting protein 3)
          Length = 361

 Score = 52.4 bits (124), Expect = 6e-07
 Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
 Frame = +2

Query: 101 AVLETALRNHATLSENDVVMVNYGQLQYKLKVLELKPAS---SVSVLETDVEVDIEGP 265
           AVLE  LRN +TL+ +DV+ ++Y    +K+K+LE+KP S   S+ V+ETD+  D   P
Sbjct: 142 AVLENVLRNFSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSICVIETDLVTDFAPP 199

>UFD1_SCHPO (O42915) Ubiquitin fusion degradation protein 1 (UB fusion protein|
           1)
          Length = 342

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 26/58 (44%), Positives = 41/58 (70%), Gaps = 3/58 (5%)
 Frame = +2

Query: 101 AVLETALRNHATLSENDVVMVNYGQLQYKLKVLELKPASS---VSVLETDVEVDIEGP 265
           AVLE ALRN +TL+++D+  + Y    Y++KV++++P  S   VSV+ETD+ VD + P
Sbjct: 152 AVLENALRNFSTLTKSDIFEILYNDQVYQIKVIDVQPDDSRHVVSVVETDLVVDFDPP 209


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,752,113
Number of Sequences: 219361
Number of extensions: 1029865
Number of successful extensions: 2567
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2566
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)