ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6f20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_193231.1| Oryza sativa (japonica cultivar-group), predic... 333 3e-88
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 333 3e-88
3dbj|AP003445.2| Oryza sativa (japonica cultivar-group) genomic D... 333 3e-88
4dbj|AK104278.1| Oryza sativa (japonica cultivar-group) cDNA clon... 333 3e-88
5dbj|AK072168.1| Oryza sativa (japonica cultivar-group) cDNA clon... 325 8e-86
6gb|AY110113.1| Zea mays CL33680_1 mRNA sequence 64 5e-07
7emb|BX571940.12| Zebrafish DNA sequence from clone DKEY-171N3 in... 44 0.42
8ref|XM_682604.1| PREDICTED: Danio rerio similar to AHNAK nucleop... 44 0.42
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.42
10dbj|AP003874.5| Oryza sativa (japonica cultivar-group) genomic D... 44 0.42
11dbj|AP005244.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.42
12ref|XM_582427.2| PREDICTED: Bos taurus similar to netrin recepto... 42 1.7
13gb|AC002387.3| Arabidopsis thaliana chromosome 2 clone F4L23 map... 42 1.7
14emb|AL357083.19| Human DNA sequence from clone RP11-562P17 on ch... 40 6.5
15ref|XM_790856.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.5
16emb|AL035531.17|HS483L3 Human DNA sequence from clone RP3-483L3 ... 40 6.5
17emb|CR378666.1| Photobacterium profundum SS9; segment 4/12 40 6.5
18emb|BX572101.1| Prochlorococcus marinus MIT9313 complete genome;... 40 6.5
19gb|AC103581.10| Danio rerio strain AB clone busm1-144f12, comple... 40 6.5
20emb|BX005044.9| Zebrafish DNA sequence from clone DKEY-7L6 in li... 40 6.5
21dbj|AB188981.1| Turnip mosaic virus gene for polyprotein, partia... 40 6.5
22emb|AL953863.13| Zebrafish DNA sequence from clone CH211-113F11 ... 40 6.5
23emb|BX855587.13| Zebrafish DNA sequence from clone DKEY-103L5 in... 40 6.5 
>ref|NM_193231.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1680

 Score =  333 bits (168), Expect = 3e-88
 Identities = 304/347 (87%), Gaps = 2/347 (0%)
 Strand = Plus / Plus

                                                                       
Query: 27  agtttgcccaaagggacatatgcgaaacttaagcctgaaggggtaggattctcagtatct 86
           ||||| |||||||||||||||||||| || ||||| ||||| || || ||||||| | ||
Sbjct: 508 agtttacccaaagggacatatgcgaagctgaagccagaaggagtggggttctcag-acct 566

                                                                       
Query: 87  ccccaaccatagnagctgtccttgaaacggcactgcgcaatcacgcaacgctatctgaaa 146
            || ||||||||  |||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct: 567 tcctaaccatagg-gctgtccttgaaacggcactccgcaatcatgcaacactatctgaaa 625

                                                                       
Query: 147 atgatgttgtcatggtgaactatggacaactgcagtataagttgaaggttcttgagttga 206
           ||||| ||||  ||||||| ||||| || ||||| || ||||||||||||||||| || |
Sbjct: 626 atgattttgttgtggtgaattatgggcagctgcaatacaagttgaaggttcttgaattaa 685

                                                                       
Query: 207 agcctgcatcaagtgtttctgtgctggagactgatgttgaagttgacattgagggaccag 266
           | |||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||
Sbjct: 686 aacctgcatcaagtgtttctgtcctggagacagatgtggaagttgacattgaaggaccag 745

                                                                       
Query: 267 attcagttttcgtcaatgaagaaaatcagcatgtgcttgtgccgcttgagactgggaaga 326
           |||||||||| | ||| | ||| ||||| |||||||||||||| ||||||||||| ||| 
Sbjct: 746 attcagttttggacaacgtagagaatcaacatgtgcttgtgccacttgagactggaaagg 805

                                                          
Query: 327 ttgaatctggagctgtggaagaagggaagttcaggtactacaaattt 373
           |||||||||||| |||||||||||| ||||| |||||||||||||||
Sbjct: 806 ttgaatctggagttgtggaagaaggaaagtttaggtactacaaattt 852
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  333 bits (168), Expect = 3e-88
 Identities = 304/347 (87%), Gaps = 2/347 (0%)
 Strand = Plus / Plus

                                                                            
Query: 27       agtttgcccaaagggacatatgcgaaacttaagcctgaaggggtaggattctcagtatct 86
                ||||| |||||||||||||||||||| || ||||| ||||| || || ||||||| | ||
Sbjct: 19387148 agtttacccaaagggacatatgcgaagctgaagccagaaggagtggggttctcag-acct 19387206

                                                                            
Query: 87       ccccaaccatagnagctgtccttgaaacggcactgcgcaatcacgcaacgctatctgaaa 146
                 || ||||||||  |||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct: 19387207 tcctaaccatagg-gctgtccttgaaacggcactccgcaatcatgcaacactatctgaaa 19387265

                                                                            
Query: 147      atgatgttgtcatggtgaactatggacaactgcagtataagttgaaggttcttgagttga 206
                ||||| ||||  ||||||| ||||| || ||||| || ||||||||||||||||| || |
Sbjct: 19387266 atgattttgttgtggtgaattatgggcagctgcaatacaagttgaaggttcttgaattaa 19387325

                                                                            
Query: 207      agcctgcatcaagtgtttctgtgctggagactgatgttgaagttgacattgagggaccag 266
                | |||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||
Sbjct: 19387326 aacctgcatcaagtgtttctgtcctggagacagatgtggaagttgacattgaaggaccag 19387385

                                                                            
Query: 267      attcagttttcgtcaatgaagaaaatcagcatgtgcttgtgccgcttgagactgggaaga 326
                |||||||||| | ||| | ||| ||||| |||||||||||||| ||||||||||| ||| 
Sbjct: 19387386 attcagttttggacaacgtagagaatcaacatgtgcttgtgccacttgagactggaaagg 19387445

                                                               
Query: 327      ttgaatctggagctgtggaagaagggaagttcaggtactacaaattt 373
                |||||||||||| |||||||||||| ||||| |||||||||||||||
Sbjct: 19387446 ttgaatctggagttgtggaagaaggaaagtttaggtactacaaattt 19387492
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>dbj|AP003445.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OJ1029_F04
          Length = 141834

 Score =  333 bits (168), Expect = 3e-88
 Identities = 304/347 (87%), Gaps = 2/347 (0%)
 Strand = Plus / Plus

                                                                          
Query: 27     agtttgcccaaagggacatatgcgaaacttaagcctgaaggggtaggattctcagtatct 86
              ||||| |||||||||||||||||||| || ||||| ||||| || || ||||||| | ||
Sbjct: 115153 agtttacccaaagggacatatgcgaagctgaagccagaaggagtggggttctcag-acct 115211

                                                                          
Query: 87     ccccaaccatagnagctgtccttgaaacggcactgcgcaatcacgcaacgctatctgaaa 146
               || ||||||||  |||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct: 115212 tcctaaccatagg-gctgtccttgaaacggcactccgcaatcatgcaacactatctgaaa 115270

                                                                          
Query: 147    atgatgttgtcatggtgaactatggacaactgcagtataagttgaaggttcttgagttga 206
              ||||| ||||  ||||||| ||||| || ||||| || ||||||||||||||||| || |
Sbjct: 115271 atgattttgttgtggtgaattatgggcagctgcaatacaagttgaaggttcttgaattaa 115330

                                                                          
Query: 207    agcctgcatcaagtgtttctgtgctggagactgatgttgaagttgacattgagggaccag 266
              | |||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||
Sbjct: 115331 aacctgcatcaagtgtttctgtcctggagacagatgtggaagttgacattgaaggaccag 115390

                                                                          
Query: 267    attcagttttcgtcaatgaagaaaatcagcatgtgcttgtgccgcttgagactgggaaga 326
              |||||||||| | ||| | ||| ||||| |||||||||||||| ||||||||||| ||| 
Sbjct: 115391 attcagttttggacaacgtagagaatcaacatgtgcttgtgccacttgagactggaaagg 115450

                                                             
Query: 327    ttgaatctggagctgtggaagaagggaagttcaggtactacaaattt 373
              |||||||||||| |||||||||||| ||||| |||||||||||||||
Sbjct: 115451 ttgaatctggagttgtggaagaaggaaagtttaggtactacaaattt 115497
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>dbj|AK104278.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-H07, full
           insert sequence
          Length = 2090

 Score =  333 bits (168), Expect = 3e-88
 Identities = 304/347 (87%), Gaps = 2/347 (0%)
 Strand = Plus / Plus

                                                                       
Query: 27  agtttgcccaaagggacatatgcgaaacttaagcctgaaggggtaggattctcagtatct 86
           ||||| |||||||||||||||||||| || ||||| ||||| || || ||||||| | ||
Sbjct: 637 agtttacccaaagggacatatgcgaagctgaagccagaaggagtggggttctcag-acct 695

                                                                       
Query: 87  ccccaaccatagnagctgtccttgaaacggcactgcgcaatcacgcaacgctatctgaaa 146
            || ||||||||  |||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct: 696 tcctaaccatagg-gctgtccttgaaacggcactccgcaatcatgcaacactatctgaaa 754

                                                                       
Query: 147 atgatgttgtcatggtgaactatggacaactgcagtataagttgaaggttcttgagttga 206
           ||||| ||||  ||||||| ||||| || ||||| || ||||||||||||||||| || |
Sbjct: 755 atgattttgttgtggtgaattatgggcagctgcaatacaagttgaaggttcttgaattaa 814

                                                                       
Query: 207 agcctgcatcaagtgtttctgtgctggagactgatgttgaagttgacattgagggaccag 266
           | |||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||
Sbjct: 815 aacctgcatcaagtgtttctgtcctggagacagatgtggaagttgacattgaaggaccag 874

                                                                       
Query: 267 attcagttttcgtcaatgaagaaaatcagcatgtgcttgtgccgcttgagactgggaaga 326
           |||||||||| | ||| | ||| ||||| |||||||||||||| ||||||||||| ||| 
Sbjct: 875 attcagttttggacaacgtagagaatcaacatgtgcttgtgccacttgagactggaaagg 934

                                                          
Query: 327 ttgaatctggagctgtggaagaagggaagttcaggtactacaaattt 373
           |||||||||||| |||||||||||| ||||| |||||||||||||||
Sbjct: 935 ttgaatctggagttgtggaagaaggaaagtttaggtactacaaattt 981
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>dbj|AK072168.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013131B08, full
            insert sequence
          Length = 2163

 Score =  325 bits (164), Expect = 8e-86
 Identities = 303/347 (87%), Gaps = 2/347 (0%)
 Strand = Plus / Plus

                                                                        
Query: 27   agtttgcccaaagggacatatgcgaaacttaagcctgaaggggtaggattctcagtatct 86
            ||||| |||||||||||||||||||| || ||||| ||||| || |  ||||||| | ||
Sbjct: 730  agtttacccaaagggacatatgcgaagctgaagccagaaggagtggagttctcag-acct 788

                                                                        
Query: 87   ccccaaccatagnagctgtccttgaaacggcactgcgcaatcacgcaacgctatctgaaa 146
             || ||||||||  |||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct: 789  tcctaaccatagg-gctgtccttgaaacggcactccgcaatcatgcaacactatctgaaa 847

                                                                        
Query: 147  atgatgttgtcatggtgaactatggacaactgcagtataagttgaaggttcttgagttga 206
            ||||| ||||  ||||||| ||||| || ||||| || ||||||||||||||||| || |
Sbjct: 848  atgattttgttgtggtgaattatgggcagctgcaatacaagttgaaggttcttgaattaa 907

                                                                        
Query: 207  agcctgcatcaagtgtttctgtgctggagactgatgttgaagttgacattgagggaccag 266
            | |||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||
Sbjct: 908  aacctgcatcaagtgtttctgtcctggagacagatgtggaagttgacattgaaggaccag 967

                                                                        
Query: 267  attcagttttcgtcaatgaagaaaatcagcatgtgcttgtgccgcttgagactgggaaga 326
            |||||||||| | ||| | ||| ||||| |||||||||||||| ||||||||||| ||| 
Sbjct: 968  attcagttttggacaacgtagagaatcaacatgtgcttgtgccacttgagactggaaagg 1027

                                                           
Query: 327  ttgaatctggagctgtggaagaagggaagttcaggtactacaaattt 373
            |||||||||||| |||||||||||| ||||| |||||||||||||||
Sbjct: 1028 ttgaatctggagttgtggaagaaggaaagtttaggtactacaaattt 1074
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>gb|AY110113.1| Zea mays CL33680_1 mRNA sequence
          Length = 1250

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 340 tgtggaagaagggaagttcaggtactacaaattttc 375
           |||||||||||| |||||||||||||||||||||||
Sbjct: 163 tgtggaagaaggaaagttcaggtactacaaattttc 198
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>emb|BX571940.12| Zebrafish DNA sequence from clone DKEY-171N3 in linkage group 14,
              complete sequence
          Length = 179550

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 246    aagttgacattgagggaccaga 267
              ||||||||||||||||||||||
Sbjct: 134553 aagttgacattgagggaccaga 134574



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 244    tgaagttgacattgagggacc 264
              |||||||||||||||||||||
Sbjct: 136675 tgaagttgacattgagggacc 136695
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>ref|XM_682604.1| PREDICTED: Danio rerio similar to AHNAK nucleoprotein isoform 1
             (LOC559276), mRNA
          Length = 15280

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 246   aagttgacattgagggaccaga 267
             ||||||||||||||||||||||
Sbjct: 12027 aagttgacattgagggaccaga 12048
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 347    gaagggaagttcaggtactacaaatt 372
              |||||||||||||| |||||||||||
Sbjct: 735416 gaagggaagttcagttactacaaatt 735441
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>dbj|AP003874.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1118_G09
          Length = 115815

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 347   gaagggaagttcaggtactacaaatt 372
             |||||||||||||| |||||||||||
Sbjct: 73947 gaagggaagttcagttactacaaatt 73972
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>dbj|AP005244.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1513_F02
          Length = 126845

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 347   gaagggaagttcaggtactacaaatt 372
             |||||||||||||| |||||||||||
Sbjct: 55223 gaagggaagttcagttactacaaatt 55248
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>ref|XM_582427.2| PREDICTED: Bos taurus similar to netrin receptor Unc5h1 (LOC506037),
            mRNA
          Length = 3484

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 238  tgatgttgaagttgacattga 258
            |||||||||||||||||||||
Sbjct: 2137 tgatgttgaagttgacattga 2117
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>gb|AC002387.3| Arabidopsis thaliana chromosome 2 clone F4L23 map CIC02E07, complete
             sequence
          Length = 122928

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 224   tctgtgctggagactgatgttgaag 248
             ||||||||||||||||| |||||||
Sbjct: 96283 tctgtgctggagactgaagttgaag 96307
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>emb|AL357083.19| Human DNA sequence from clone RP11-562P17 on chromosome 13 Contains part
              of the NEAB gene for neurobeachin (BCL8B FLJ10197 KIAA1544)
              and a prohibitin (PHB) pseudogene, complete sequence
          Length = 134156

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 281    aatgaagaaaatcagcatgt 300
              ||||||||||||||||||||
Sbjct: 119978 aatgaagaaaatcagcatgt 119997
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>ref|XM_790856.1| PREDICTED: Strongylocentrotus purpuratus similar to topoisomerase
            (DNA) III beta (LOC591288), mRNA
          Length = 2304

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 241  tgttgaagttgacattgagg 260
            ||||||||||||||||||||
Sbjct: 2068 tgttgaagttgacattgagg 2049
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>emb|AL035531.17|HS483L3 Human DNA sequence from clone RP3-483L3 on chromosome 6p25.1-25.3,
             complete sequence
          Length = 74513

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 332   tctggagctgtggaagaagg 351
             ||||||||||||||||||||
Sbjct: 24457 tctggagctgtggaagaagg 24476
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>emb|CR378666.1| Photobacterium profundum SS9; segment 4/12
          Length = 348313

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 204   tgaagcctgcatcaagtgtt 223
             ||||||||||||||||||||
Sbjct: 13104 tgaagcctgcatcaagtgtt 13123
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>emb|BX572101.1| Prochlorococcus marinus MIT9313 complete genome; segment 7/7
          Length = 318136

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 226   tgtgctggagactgatgttg 245
             ||||||||||||||||||||
Sbjct: 38870 tgtgctggagactgatgttg 38851
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>gb|AC103581.10| Danio rerio strain AB clone busm1-144f12, complete sequence
          Length = 101943

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 13     aggtgaagtatgcaagtttg 32
              ||||||||||||||||||||
Sbjct: 101096 aggtgaagtatgcaagtttg 101077
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>emb|BX005044.9| Zebrafish DNA sequence from clone DKEY-7L6 in linkage group 2, complete
             sequence
          Length = 174623

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    aggtgaagtatgcaagtttg 32
             ||||||||||||||||||||
Sbjct: 56466 aggtgaagtatgcaagtttg 56447
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>dbj|AB188981.1| Turnip mosaic virus gene for polyprotein, partial cds, isolate:
           DNK2
          Length = 864

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 206 aagcctgcatcaagtgtttc 225
           ||||||||||||||||||||
Sbjct: 26  aagcctgcatcaagtgtttc 7
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>emb|AL953863.13| Zebrafish DNA sequence from clone CH211-113F11 in linkage group 14,
             complete sequence
          Length = 163814

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    aggtgaagtatgcaagtttg 32
             ||||||||||||||||||||
Sbjct: 24213 aggtgaagtatgcaagtttg 24194
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>emb|BX855587.13| Zebrafish DNA sequence from clone DKEY-103L5 in linkage group 7,
             complete sequence
          Length = 131836

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    aggtgaagtatgcaagtttg 32
             ||||||||||||||||||||
Sbjct: 21130 aggtgaagtatgcaagtttg 21149


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,761,539
Number of Sequences: 3902068
Number of extensions: 3761539
Number of successful extensions: 67416
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67298
Number of HSP's gapped (non-prelim): 113
length of query: 484
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 462
effective length of database: 17,147,199,772
effective search space: 7922006294664
effective search space used: 7922006294664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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