ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6f16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192099.1| Oryza sativa (japonica cultivar-group), predic... 52 3e-04
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 52 3e-04
3dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic D... 52 3e-04
4dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic D... 52 3e-04
5dbj|AK121587.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 3e-04
6dbj|AK098893.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 3e-04
7dbj|AK098877.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 3e-04
8dbj|AK060428.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 3e-04
9dbj|D38231.1|RICGPBSLP Oryza sativa (japonica cultivar-group) RW... 52 3e-04
10gb|DQ073456.1| Choristoneura fumiferana activated C kinase 1 rec... 48 0.004
11gb|DQ073455.1| Choristoneura fumiferana activated C kinase 1 rec... 48 0.004
12dbj|AB180244.1| Fusarium oxysporum fgb2 gene for G-protein beta ... 48 0.004
13gb|U49437.1|BGU49437 Biomphalaria glabrata RACK mRNA, complete cds 46 0.017
14ref|XM_758830.1| Theileria parva strain Muguga chromosome 4 guan... 44 0.067
15gb|AF124742.1|AF124742 Euprymna scolopes guanine nucleotide-bind... 44 0.067
16gb|AY228759.1| Junonia coenia fringe mRNA, complete cds 42 0.27
17ref|XM_362274.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 1.0
18gb|AY389907.1| Latimeria chalumnae guanine nucleotide binding pr... 40 1.0
19gb|AF548359.2| Paracoccidioides brasiliensis RACK1-like protein ... 40 1.0
20gb|DQ186603.2| Paracoccidioides brasiliensis RACK1-like protein ... 40 1.0
21ref|XM_390046.1| Gibberella zeae PH-1 chromosome 1 GBLP_NEUCR Gu... 40 1.0
22gb|DQ393574.1| Metarhizium anisopliae G-protein beta subunit mRN... 40 1.0
23gb|AF368031.1|AF368031 Heliothis virescens receptor for activate... 40 1.0
24gb|AY177654.1| Canis familiaris strain Pungsan haplotype 2 mitoc... 38 4.1
25gb|AF531740.1| Canis familiaris isolate D5 control region, parti... 38 4.1
26gb|AF531739.1| Canis familiaris isolate D6 control region, parti... 38 4.1
27gb|AF531738.1| Canis familiaris isolate D4 control region, parti... 38 4.1
28gb|AF531737.1| Canis familiaris isolate D3 control region, parti... 38 4.1
29gb|AF531736.1| Canis familiaris isolate D2 control region, parti... 38 4.1
30gb|AF531735.1| Canis familiaris isolate D1 control region, parti... 38 4.1
31gb|AF531729.1| Canis familiaris isolate B8 control region, parti... 38 4.1
32gb|AF531728.1| Canis familiaris isolate B7 control region, parti... 38 4.1
33gb|AF531713.1| Canis familiaris isolate A62 control region, part... 38 4.1
34gb|AF531709.1| Canis familiaris isolate A58 control region, part... 38 4.1
35gb|AF531661.1| Canis familiaris isolate A8 control region, parti... 38 4.1
36gb|AF531660.1| Canis familiaris isolate A7 control region, parti... 38 4.1
37gb|AY240067.1| Canis familiaris H443 mitochondrial control regio... 38 4.1
38gb|DQ480502.1| Canis familiaris isolate 2 breed Jamthund mitocho... 38 4.1
39gb|DQ480492.1| Canis familiaris isolate 1 breed Jamthund mitocho... 38 4.1
40gb|DQ480490.1| Canis familiaris isolate 1 breed Flat Coated Retr... 38 4.1
41gb|AY570167.1| Canis familiaris isolate D1Gl D-loop, partial seq... 38 4.1
42ref|XM_954977.1| Neurospora crassa OR74A hypothetical protein (N... 38 4.1
43ref|XM_325664.1| Neurospora crassa OR74A hypothetical protein (N... 38 4.1
44gb|AY289997.1| Canis aureus isolate Jackal-AP2 mitochondrial con... 38 4.1
45gb|AY289996.1| Canis aureus isolate Jackal-AP1 mitochondrial con... 38 4.1
46gb|AC163273.4| Mus musculus chromosome 5, clone RP24-396E18, com... 38 4.1
47ref|XM_753462.1| Ustilago maydis 521 hypothetical protein (UM024... 38 4.1
48ref|XM_746421.1| Aspergillus fumigatus Af293 guanine nucleotide-... 38 4.1
49gb|AY172675.1| Canis latrans haplotype 2 mitochondrial D-loop, c... 38 4.1
50emb|X81875.1|NCCPC2 N.crassa cpc-2 gene 38 4.1
51gb|AY656745.1| Canis familiaris isolate 2 breed English Springer... 38 4.1
52dbj|AB226203.1| Aspergillus oryzae cDNA, contig sequence: AoEST3062 38 4.1
53dbj|AP007150.1| Aspergillus oryzae RIB40 genomic DNA, SC009 38 4.1
54dbj|AB168677.1| Macaca fascicularis testis cDNA clone: QtsA-1408... 38 4.1
55dbj|AB048589.1| Canis familiaris nuclear pseudogene of mitochond... 38 4.1
56dbj|AB055021.1| Canis familiaris mitochondrial DNA, D-loop regio... 38 4.1
57dbj|AB055020.1| Canis familiaris mitochondrial DNA, D-loop regio... 38 4.1
58gb|AF184048.1|AF184048 Canis aureus haplotype j1 mitochondrial c... 38 4.1
59gb|AF115701.1|AF115701 Canis lupus haplotype w16 mitochondrial D... 38 4.1
60gb|AF115700.1|AF115700 Canis lupus haplotype w15 mitochondrial D... 38 4.1
61gb|AF115699.1|AF115699 Canis lupus haplotype w14 mitochondrial D... 38 4.1
62gb|AF115695.1|AF115695 Canis lupus haplotype w10 mitochondrial D... 38 4.1
63dbj|AK108115.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 4.1
64gb|AF098138.1|AF098138 Canis familiaris haplotype Do13 mitochond... 38 4.1
65gb|AF098137.1|AF098137 Canis familiaris haplotype Do12 mitochond... 38 4.1
66gb|AF098154.1|AF098154 Canis latrans clone Coyote16 mitochondria... 38 4.1
67gb|AF098155.1|AF098155 Vulpes vulpes mitochondrial D-loop, parti... 38 4.1
68gb|AY706515.1| Canis familiaris isolate H40 cytochrome b gene, p... 38 4.1
69gb|AY706513.1| Canis familiaris isolate H38 cytochrome b gene, p... 38 4.1
70gb|AY706481.1| Canis familiaris isolate H06 cytochrome b gene, p... 38 4.1
71gb|AY706477.1| Canis familiaris isolate H02 cytochrome b gene, p... 38 4.1
72gb|AF064570.1|AF064570 Canis familiaris breed Sapsaree mitochond... 38 4.1
73gb|AF008155.1|AF008155 Canis familiaris isolate D8b mitochondria... 38 4.1
74gb|AF008153.1|AF008153 Canis familiaris isolate D8a mitochondria... 38 4.1
75gb|AF008139.1|AF008139 Canis lupus isolate W5 mitochondrial cont... 38 4.1
76gb|AF008138.1|AF008138 Canis lupus isolate W4 mitochondrial cont... 38 4.1
77emb|AL591953.8| Mouse DNA sequence from clone RP23-381N9 on chro... 38 4.1
78dbj|D83639.1| Vulpes vulpes mitochondrial DNA for D-loop 38 4.1
79dbj|D83614.1| Nyctereutes procyonoides mitochondrial DNA for D-loop 38 4.1
80dbj|AB007372.1| Canis lupus lupus mitochondrial gene, D-loop reg... 38 4.1 
>ref|NM_192099.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1005

 Score = 52.0 bits (26), Expect = 3e-04
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 23  gcggtcagcccagacggttcactctgcgcctctggtggcaaggatggcgt 72
           ||||||||||| |||||||| || ||||| || |||||||| ||||||||
Sbjct: 646 gcggtcagccccgacggttctctgtgcgcgtccggtggcaaagatggcgt 695
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 3e-04
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                  
Query: 23       gcggtcagcccagacggttcactctgcgcctctggtggcaaggatggcgt 72
                ||||||||||| |||||||| || ||||| || |||||||| ||||||||
Sbjct: 28324800 gcggtcagccccgacggttctctgtgcgcgtccggtggcaaagatggcgt 28324849
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>dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0478H03
          Length = 167560

 Score = 52.0 bits (26), Expect = 3e-04
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                
Query: 23     gcggtcagcccagacggttcactctgcgcctctggtggcaaggatggcgt 72
              ||||||||||| |||||||| || ||||| || |||||||| ||||||||
Sbjct: 159307 gcggtcagccccgacggttctctgtgcgcgtccggtggcaaagatggcgt 159356
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>dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0519D04
          Length = 193068

 Score = 52.0 bits (26), Expect = 3e-04
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                               
Query: 23    gcggtcagcccagacggttcactctgcgcctctggtggcaaggatggcgt 72
             ||||||||||| |||||||| || ||||| || |||||||| ||||||||
Sbjct: 39900 gcggtcagccccgacggttctctgtgcgcgtccggtggcaaagatggcgt 39949
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>dbj|AK121587.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037K24, full
           insert sequence
          Length = 1358

 Score = 52.0 bits (26), Expect = 3e-04
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 23  gcggtcagcccagacggttcactctgcgcctctggtggcaaggatggcgt 72
           ||||||||||| |||||||| || ||||| || |||||||| ||||||||
Sbjct: 744 gcggtcagccccgacggttctctgtgcgcgtccggtggcaaagatggcgt 793
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>dbj|AK098893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001N15, full
           insert sequence
          Length = 1256

 Score = 52.0 bits (26), Expect = 3e-04
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 23  gcggtcagcccagacggttcactctgcgcctctggtggcaaggatggcgt 72
           ||||||||||| |||||||| || ||||| || |||||||| ||||||||
Sbjct: 715 gcggtcagccccgacggttctctgtgcgcgtccggtggcaaagatggcgt 764
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>dbj|AK098877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E12, full
           insert sequence
          Length = 1326

 Score = 52.0 bits (26), Expect = 3e-04
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 23  gcggtcagcccagacggttcactctgcgcctctggtggcaaggatggcgt 72
           ||||||||||| |||||||| || ||||| || |||||||| ||||||||
Sbjct: 732 gcggtcagccccgacggttctctgtgcgcgtccggtggcaaagatggcgt 781
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>dbj|AK060428.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-A02, full
           insert sequence
          Length = 1351

 Score = 52.0 bits (26), Expect = 3e-04
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 23  gcggtcagcccagacggttcactctgcgcctctggtggcaaggatggcgt 72
           ||||||||||| |||||||| || ||||| || |||||||| ||||||||
Sbjct: 738 gcggtcagccccgacggttctctgtgcgcgtccggtggcaaagatggcgt 787
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>dbj|D38231.1|RICGPBSLP Oryza sativa (japonica cultivar-group) RWD mRNA for q group of
           receptor for activated C-kinase, complete cds
          Length = 1285

 Score = 52.0 bits (26), Expect = 3e-04
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 23  gcggtcagcccagacggttcactctgcgcctctggtggcaaggatggcgt 72
           ||||||||||| |||||||| || ||||| || |||||||| ||||||||
Sbjct: 672 gcggtcagccccgacggttctctgtgcgcgtccggtggcaaagatggcgt 721
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>gb|DQ073456.1| Choristoneura fumiferana activated C kinase 1 receptor (RACK1) gene,
            complete cds
          Length = 2925

 Score = 48.1 bits (24), Expect = 0.004
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 44   ctctgcgcctctggtggcaaggat 67
            ||||||||||||||||||||||||
Sbjct: 1695 ctctgcgcctctggtggcaaggat 1718
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>gb|DQ073455.1| Choristoneura fumiferana activated C kinase 1 receptor (RACK1)
           mRNA, complete cds
          Length = 1427

 Score = 48.1 bits (24), Expect = 0.004
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 44  ctctgcgcctctggtggcaaggat 67
           ||||||||||||||||||||||||
Sbjct: 705 ctctgcgcctctggtggcaaggat 728
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>dbj|AB180244.1| Fusarium oxysporum fgb2 gene for G-protein beta like WD repeat
            protein, complete cds
          Length = 1796

 Score = 48.1 bits (24), Expect = 0.004
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 35   gacggttcactctgcgcctctggtggcaagga 66
            |||||||| || ||||||||||||||||||||
Sbjct: 1190 gacggttctctgtgcgcctctggtggcaagga 1221
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>gb|U49437.1|BGU49437 Biomphalaria glabrata RACK mRNA, complete cds
          Length = 1235

 Score = 46.1 bits (23), Expect = 0.017
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 32  ccagacggttcactctgcgcctctggtggcaagga 66
           |||||||| || || ||||||||||||||||||||
Sbjct: 665 ccagacggctcgctgtgcgcctctggtggcaagga 699
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>ref|XM_758830.1| Theileria parva strain Muguga chromosome 4 guanine
           nucleotide-binding protein (TP04_0288) partial mRNA
          Length = 1112

 Score = 44.1 bits (22), Expect = 0.067
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 32  ccagacggttcactctgcgcctctggtggcaaggatgg 69
           |||||||| ||||| ||||| ||||||||||| |||||
Sbjct: 730 ccagacgggtcactttgcgcatctggtggcaaagatgg 767
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>gb|AF124742.1|AF124742 Euprymna scolopes guanine nucleotide-binding protein (RACKI) mRNA,
           partial cds
          Length = 939

 Score = 44.1 bits (22), Expect = 0.067
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 41  tcactctgcgcctctggtggcaaggatggc 70
           |||||||| || ||||||||||||||||||
Sbjct: 613 tcactctgtgcttctggtggcaaggatggc 642
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>gb|AY228759.1| Junonia coenia fringe mRNA, complete cds
          Length = 2398

 Score = 42.1 bits (21), Expect = 0.27
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 38  ggttcactctgcgcctctggtggcaagga 66
           ||||||||||| ||||| |||||||||||
Sbjct: 147 ggttcactctgtgcctccggtggcaagga 119
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>ref|XM_362274.1| Magnaporthe grisea 70-15 hypothetical protein (MG04719.4) partial
           cds
          Length = 951

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 35  gacggttcactctgcgcctctggtggcaagga 66
           ||||| || ||||||||||| |||||||||||
Sbjct: 607 gacggatccctctgcgcctcgggtggcaagga 638
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>gb|AY389907.1| Latimeria chalumnae guanine nucleotide binding protein beta
           polypeptide 2-like 1 mRNA, partial cds
          Length = 902

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 50  gcctctggtggcaaggatgg 69
           ||||||||||||||||||||
Sbjct: 597 gcctctggtggcaaggatgg 616
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>gb|AF548359.2| Paracoccidioides brasiliensis RACK1-like protein mRNA, complete cds
          Length = 1409

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 35  gacggttcactctgcgcctctggtggcaagga 66
           ||||| || ||||||||||| |||||||||||
Sbjct: 711 gacggatccctctgcgcctccggtggcaagga 742
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>gb|DQ186603.2| Paracoccidioides brasiliensis RACK1-like protein gene, complete cds
          Length = 1804

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 35   gacggttcactctgcgcctctggtggcaagga 66
            ||||| || ||||||||||| |||||||||||
Sbjct: 1126 gacggatccctctgcgcctccggtggcaagga 1157
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>ref|XM_390046.1| Gibberella zeae PH-1 chromosome 1 GBLP_NEUCR Guanine
           nucleotide-binding protein beta subunit-like protein
           (Cross-pathway control WD-repeat protein cpc-2)
           (FG09870.1) partial mRNA
          Length = 951

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 35  gacggttcactctgcgcctctggtggcaagga 66
           |||||||| || |||||||| |||||||||||
Sbjct: 607 gacggttccctgtgcgcctccggtggcaagga 638
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>gb|DQ393574.1| Metarhizium anisopliae G-protein beta subunit mRNA, complete cds
          Length = 1165

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 35  gacggttcactctgcgcctctggtggcaagga 66
           ||||| || ||||||||||| |||||||||||
Sbjct: 694 gacggctccctctgcgcctccggtggcaagga 725
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>gb|AF368031.1|AF368031 Heliothis virescens receptor for activated protein kinase C RACK1
           mRNA, complete cds
          Length = 1071

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 35  gacggttcactctgcgcctctggtggcaagga 66
           |||||||| |||||||| || |||||||||||
Sbjct: 607 gacggttctctctgcgcttccggtggcaagga 638
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>gb|AY177654.1| Canis familiaris strain Pungsan haplotype 2 mitochondrial D-loop,
           complete sequence
          Length = 980

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 520 gttagtgccgttgcggtca 502
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>gb|AF531740.1| Canis familiaris isolate D5 control region, partial sequence
          Length = 608

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 546 gttagtgccgttgcggtca 528
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>gb|AF531739.1| Canis familiaris isolate D6 control region, partial sequence
          Length = 608

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 546 gttagtgccgttgcggtca 528
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>gb|AF531738.1| Canis familiaris isolate D4 control region, partial sequence
          Length = 609

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 547 gttagtgccgttgcggtca 529
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>gb|AF531737.1| Canis familiaris isolate D3 control region, partial sequence
          Length = 608

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 546 gttagtgccgttgcggtca 528
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>gb|AF531736.1| Canis familiaris isolate D2 control region, partial sequence
          Length = 608

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 546 gttagtgccgttgcggtca 528
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>gb|AF531735.1| Canis familiaris isolate D1 control region, partial sequence
          Length = 609

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 547 gttagtgccgttgcggtca 529
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>gb|AF531729.1| Canis familiaris isolate B8 control region, partial sequence
          Length = 610

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 548 gttagtgccgttgcggtca 530
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>gb|AF531728.1| Canis familiaris isolate B7 control region, partial sequence
          Length = 609

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 547 gttagtgccgttgcggtca 529
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>gb|AF531713.1| Canis familiaris isolate A62 control region, partial sequence
          Length = 587

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 525 gttagtgccgttgcggtca 507
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>gb|AF531709.1| Canis familiaris isolate A58 control region, partial sequence
          Length = 591

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 529 gttagtgccgttgcggtca 511
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>gb|AF531661.1| Canis familiaris isolate A8 control region, partial sequence
          Length = 609

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 547 gttagtgccgttgcggtca 529
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>gb|AF531660.1| Canis familiaris isolate A7 control region, partial sequence
          Length = 609

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 547 gttagtgccgttgcggtca 529
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>gb|AY240067.1| Canis familiaris H443 mitochondrial control region, partial
           sequence
          Length = 1287

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 523 gttagtgccgttgcggtca 505
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>gb|DQ480502.1| Canis familiaris isolate 2 breed Jamthund mitochondrion, complete
             genome
          Length = 16729

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 11    gttagtgccgttgcggtca 29
             |||||||||||||||||||
Sbjct: 15979 gttagtgccgttgcggtca 15961
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>gb|DQ480492.1| Canis familiaris isolate 1 breed Jamthund mitochondrion, complete
             genome
          Length = 16729

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 11    gttagtgccgttgcggtca 29
             |||||||||||||||||||
Sbjct: 15979 gttagtgccgttgcggtca 15961
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>gb|DQ480490.1| Canis familiaris isolate 1 breed Flat Coated Retriever mitochondrion,
             complete genome
          Length = 16731

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 11    gttagtgccgttgcggtca 29
             |||||||||||||||||||
Sbjct: 15981 gttagtgccgttgcggtca 15963
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>gb|AY570167.1| Canis familiaris isolate D1Gl D-loop, partial sequence;
           mitochondrial
          Length = 586

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 524 gttagtgccgttgcggtca 506
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>ref|XM_954977.1| Neurospora crassa OR74A hypothetical protein (NCU05810.1) partial
           mRNA
          Length = 951

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 44  ctctgcgcctctggtggcaagga 66
           ||||||||||| |||||||||||
Sbjct: 616 ctctgcgcctccggtggcaagga 638
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>ref|XM_325664.1| Neurospora crassa OR74A hypothetical protein (NCU05810.1) partial
           mRNA
          Length = 951

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 44  ctctgcgcctctggtggcaagga 66
           ||||||||||| |||||||||||
Sbjct: 616 ctctgcgcctccggtggcaagga 638
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>gb|AY289997.1| Canis aureus isolate Jackal-AP2 mitochondrial control region,
           complete sequence
          Length = 1299

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 526 gttagtgccgttgcggtca 508
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>gb|AY289996.1| Canis aureus isolate Jackal-AP1 mitochondrial control region,
           complete sequence
          Length = 1333

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 530 gttagtgccgttgcggtca 512
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>gb|AC163273.4| Mus musculus chromosome 5, clone RP24-396E18, complete sequence
          Length = 136964

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 31   cccagacggttcactctgc 49
            |||||||||||||||||||
Sbjct: 3697 cccagacggttcactctgc 3715
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>ref|XM_753462.1| Ustilago maydis 521 hypothetical protein (UM02408.1) partial mRNA
          Length = 1281

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 44  ctctgcgcctctggtggcaagga 66
           ||||||||||| |||||||||||
Sbjct: 712 ctctgcgcctccggtggcaagga 734
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>ref|XM_746421.1| Aspergillus fumigatus Af293 guanine nucleotide-binding protein
           subunit (Afu4g13170) partial mRNA
          Length = 951

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 44  ctctgcgcctctggtggcaagga 66
           ||||||||||| |||||||||||
Sbjct: 616 ctctgcgcctccggtggcaagga 638
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>gb|AY172675.1| Canis latrans haplotype 2 mitochondrial D-loop, complete sequence
          Length = 1244

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 514 gttagtgccgttgcggtca 496
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>emb|X81875.1|NCCPC2 N.crassa cpc-2 gene
          Length = 4269

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 44   ctctgcgcctctggtggcaagga 66
            ||||||||||| |||||||||||
Sbjct: 2934 ctctgcgcctccggtggcaagga 2956
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>gb|AY656745.1| Canis familiaris isolate 2 breed English Springer Spaniel
             mitochondrion, complete genome
          Length = 16760

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 11    gttagtgccgttgcggtca 29
             |||||||||||||||||||
Sbjct: 15980 gttagtgccgttgcggtca 15962
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>dbj|AB226203.1| Aspergillus oryzae cDNA, contig sequence: AoEST3062
          Length = 1325

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 44  ctctgcgcctctggtggcaagga 66
           ||||||||||| |||||||||||
Sbjct: 709 ctctgcgcctccggtggcaagga 731
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>dbj|AP007150.1| Aspergillus oryzae RIB40 genomic DNA, SC009
          Length = 1913118

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 44     ctctgcgcctctggtggcaagga 66
              ||||||||||| |||||||||||
Sbjct: 703707 ctctgcgcctccggtggcaagga 703729
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>dbj|AB168677.1| Macaca fascicularis testis cDNA clone: QtsA-14081, similar to human
           guanine nucleotide binding protein (G protein),
           betapolypeptide 2-like 1 (GNB2L1), mRNA, RefSeq:
           NM_006098.2
          Length = 1117

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 34/39 (87%)
 Strand = Plus / Plus

                                                  
Query: 32  ccagacggttcactctgcgcctctggtggcaaggatggc 70
           |||||||| || ||||| || ||||| ||||||||||||
Sbjct: 704 ccagacggatccctctgtgcttctggaggcaaggatggc 742
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>dbj|AB048589.1| Canis familiaris nuclear pseudogene of mitochondrial cytb, tRNA-thr,
            tRNA-pro, D-loop, tRNA-phe, 12S rRNA, tRNA-val, 16S rRNA,
            tRNA-leu, ND1, tRNA-ile
          Length = 5712

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 11   gttagtgccgttgcggtca 29
            |||||||||||||||||||
Sbjct: 1158 gttagtgccgttgcggtca 1140
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>dbj|AB055021.1| Canis familiaris mitochondrial DNA, D-loop region, partial
           sequence, isolate:Dachshunds1
          Length = 597

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 519 gttagtgccgttgcggtca 501
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>dbj|AB055020.1| Canis familiaris mitochondrial DNA, D-loop region, partial
           sequence, isolate:Chow Chow1
          Length = 597

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 519 gttagtgccgttgcggtca 501
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>gb|AF184048.1|AF184048 Canis aureus haplotype j1 mitochondrial control region, partial
           sequence
          Length = 595

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 566 gttagtgccgttgcggtca 548
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>gb|AF115701.1|AF115701 Canis lupus haplotype w16 mitochondrial D-loop, partial sequence
          Length = 543

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 520 gttagtgccgttgcggtca 502
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>gb|AF115700.1|AF115700 Canis lupus haplotype w15 mitochondrial D-loop, partial sequence
          Length = 543

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 520 gttagtgccgttgcggtca 502
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>gb|AF115699.1|AF115699 Canis lupus haplotype w14 mitochondrial D-loop, partial sequence
          Length = 543

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 520 gttagtgccgttgcggtca 502
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>gb|AF115695.1|AF115695 Canis lupus haplotype w10 mitochondrial D-loop, partial sequence
          Length = 542

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 519 gttagtgccgttgcggtca 501
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>dbj|AK108115.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-C04, full
           insert sequence
          Length = 1123

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 44  ctctgcgcctctggtggcaagga 66
           ||||||||||| |||||||||||
Sbjct: 659 ctctgcgcctccggtggcaagga 681
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>gb|AF098138.1|AF098138 Canis familiaris haplotype Do13 mitochondrial D-loop, partial
           sequence
          Length = 707

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 545 gttagtgccgttgcggtca 527
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>gb|AF098137.1|AF098137 Canis familiaris haplotype Do12 mitochondrial D-loop, partial
           sequence
          Length = 707

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 545 gttagtgccgttgcggtca 527
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>gb|AF098154.1|AF098154 Canis latrans clone Coyote16 mitochondrial D-loop, partial sequence
          Length = 702

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 540 gttagtgccgttgcggtca 522
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>gb|AF098155.1|AF098155 Vulpes vulpes mitochondrial D-loop, partial sequence
          Length = 678

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 523 gttagtgccgttgcggtca 505
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>gb|AY706515.1| Canis familiaris isolate H40 cytochrome b gene, partial cds;
           tRNA-Thr and tRNA-Pro genes, complete sequence; and
           control region, partial sequence; mitochondrial
          Length = 885

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 766 gttagtgccgttgcggtca 748
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>gb|AY706513.1| Canis familiaris isolate H38 cytochrome b gene, partial cds;
           tRNA-Thr and tRNA-Pro genes, complete sequence; and
           control region, partial sequence; mitochondrial
          Length = 885

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 766 gttagtgccgttgcggtca 748
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>gb|AY706481.1| Canis familiaris isolate H06 cytochrome b gene, partial cds;
           tRNA-Thr and tRNA-Pro genes, complete sequence; and
           control region, partial sequence; mitochondrial
          Length = 885

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 766 gttagtgccgttgcggtca 748
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>gb|AY706477.1| Canis familiaris isolate H02 cytochrome b gene, partial cds;
           tRNA-Thr and tRNA-Pro genes, complete sequence; and
           control region, partial sequence; mitochondrial
          Length = 885

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 766 gttagtgccgttgcggtca 748
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>gb|AF064570.1|AF064570 Canis familiaris breed Sapsaree mitochondrial D-loop, partial
           sequence
          Length = 409

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 356 gttagtgccgttgcggtca 338
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>gb|AF008155.1|AF008155 Canis familiaris isolate D8b mitochondrial control region I, D-loop
           sequence
          Length = 713

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 585 gttagtgccgttgcggtca 567
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>gb|AF008153.1|AF008153 Canis familiaris isolate D8a mitochondrial control region I, D-loop
           sequence
          Length = 713

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 585 gttagtgccgttgcggtca 567
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>gb|AF008139.1|AF008139 Canis lupus isolate W5 mitochondrial control region I, D-loop
           sequence
          Length = 712

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 584 gttagtgccgttgcggtca 566
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>gb|AF008138.1|AF008138 Canis lupus isolate W4 mitochondrial control region I, D-loop
           sequence
          Length = 713

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 585 gttagtgccgttgcggtca 567
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>emb|AL591953.8| Mouse DNA sequence from clone RP23-381N9 on chromosome 5, complete
            sequence
          Length = 172613

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 31   cccagacggttcactctgc 49
            |||||||||||||||||||
Sbjct: 3905 cccagacggttcactctgc 3887
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>dbj|D83639.1| Vulpes vulpes mitochondrial DNA for D-loop
          Length = 666

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 498 gttagtgccgttgcggtca 480
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>dbj|D83614.1| Nyctereutes procyonoides mitochondrial DNA for D-loop
          Length = 667

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 510 gttagtgccgttgcggtca 492
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>dbj|AB007372.1| Canis lupus lupus mitochondrial gene, D-loop region, partial
           sequence
          Length = 673

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  gttagtgccgttgcggtca 29
           |||||||||||||||||||
Sbjct: 520 gttagtgccgttgcggtca 502


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 377,237
Number of Sequences: 3902068
Number of extensions: 377237
Number of successful extensions: 20487
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20399
Number of HSP's gapped (non-prelim): 88
length of query: 95
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 74
effective length of database: 17,151,101,840
effective search space: 1269181536160
effective search space used: 1269181536160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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