ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6f09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469024.1| Oryza sativa (japonica cultivar-group), mRNA 52 1e-04
2dbj|AK120336.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 1e-04
3gb|AY107260.1| Zea mays PCO071008 mRNA sequence 42 0.14
4emb|AL928943.9| Mouse DNA sequence from clone RP23-435J15 on chr... 42 0.14
5gb|AC145089.7| Mus musculus chromosome 3, clone RP23-268K12, com... 38 2.2
6ref|XM_424940.1| PREDICTED: Gallus gallus similar to RIKEN cDNA ... 38 2.2
7gb|CP000302.1| Shewanella denitrificans OS217, complete genome 38 2.2
8emb|BX571658.1| Wolinella succinogenes, complete genome; segment... 38 2.2
9emb|AL772247.19| Mouse DNA sequence from clone DN-316O2 on chrom... 38 2.2
10emb|BX934080.1| Gallus gallus finished cDNA, clone ChEST57f9 38 2.2
11emb|BX932541.1| Gallus gallus finished cDNA, clone ChEST596p20 38 2.2
12gb|AC157988.5| Mus musculus chromosome 3, clone RP23-149E4, comp... 38 2.2
13ref|XM_422364.1| PREDICTED: Gallus gallus similar to hypothetica... 36 8.8
14ref|XM_713504.1| Candida albicans SC5314 hypothetical protein (C... 36 8.8
15ref|XM_713421.1| Candida albicans SC5314 glucan synthase (CaO19_... 36 8.8
16gb|AC154581.2| Mus musculus BAC clone RP23-381G5 from chromosome... 36 8.8
17ref|XM_851421.1| PREDICTED: Canis familiaris similar to tetratri... 36 8.8
18ref|XM_851382.1| PREDICTED: Canis familiaris similar to tetratri... 36 8.8
19ref|XM_851337.1| PREDICTED: Canis familiaris similar to tetratri... 36 8.8
20ref|XM_851295.1| PREDICTED: Canis familiaris similar to tetratri... 36 8.8
21gb|AC084383.1| Mus musculus BAC clone RP23-10B20 from 17, comple... 36 8.8
22emb|AL592063.10| Human DNA sequence from clone RP11-575F9 on chr... 36 8.8
23emb|AL590612.6| Human DNA sequence from clone RP11-330A8 on chro... 36 8.8
24emb|AL357712.10| Human DNA sequence from clone GS1-756B1 on chro... 36 8.8
25emb|CR457482.5| Zebrafish DNA sequence from clone CH211-159P3 in... 36 8.8
26gb|AC120349.5| Homo sapiens chromosome 18, clone RP11-380M21, co... 36 8.8
27dbj|D88816.1| Candida albicans GSL1 gene for glucan synthase, co... 36 8.8
28emb|CR524365.1| Gallus gallus finished cDNA, clone ChEST120j8 36 8.8
29emb|AJ303140.1|HSA303140 Homo sapiens NOD2 gene for LRR-containi... 36 8.8
30gb|AC007728.4|AC007728 Homo sapiens chromosome 16 clone RP11-327... 36 8.8
31gb|AC011740.7| Homo sapiens BAC clone RP11-106G13 from 2, comple... 36 8.8
32gb|AC090695.14| Homo sapiens chromosome 15, clone RP11-192M23, c... 36 8.8
33gb|AC091713.4| Papio anubis clone RP41-217F22, complete sequence 36 8.8
34gb|AC087762.20| Homo sapiens chromosome 15, clone RP11-76I7, com... 36 8.8
35gb|AC097004.3| Papio anubis clone RP41-290N16, complete sequence 36 8.8
36ref|XM_317489.2| Anopheles gambiae str. PEST ENSANGP00000012301 ... 36 8.8
37dbj|AP001876.5| Homo sapiens genomic DNA, chromosome 11 clone:CT... 36 8.8
38dbj|AP000908.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 36 8.8
39dbj|AP000652.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 36 8.8
40gb|AC105042.7| Homo sapiens chromosome 18, clone CTD-2544E12, co... 36 8.8
41emb|CT009754.11| Mouse DNA sequence from clone RP23-5P19 on chro... 36 8.8
42emb|AL645947.9| Mouse DNA sequence from clone RP23-338K8 on chro... 36 8.8
43emb|AL772236.11| Mouse DNA sequence from clone RP23-98F14 on chr... 36 8.8 
>ref|XM_469024.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 747

 Score = 52.0 bits (26), Expect = 1e-04
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                 
Query: 2   ttgagccttcacttcgagctgatactgcagctggcagttctttgagagaagaca 55
           |||||||||||||| |||||| |||||| || || | ||| |||||||||||||
Sbjct: 405 ttgagccttcacttagagctggtactgcggcaggtaattcattgagagaagaca 458
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>dbj|AK120336.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059M23, full
           insert sequence
          Length = 739

 Score = 52.0 bits (26), Expect = 1e-04
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                 
Query: 2   ttgagccttcacttcgagctgatactgcagctggcagttctttgagagaagaca 55
           |||||||||||||| |||||| |||||| || || | ||| |||||||||||||
Sbjct: 405 ttgagccttcacttagagctggtactgcggcaggtaattcattgagagaagaca 458
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>gb|AY107260.1| Zea mays PCO071008 mRNA sequence
          Length = 737

 Score = 42.1 bits (21), Expect = 0.14
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 1   attgagccttcacttcgagctgatactgcagctggcagttctttgagagaaga 53
           ||||||||||||||| |||||| |||  | ||||  | |||||||||||||||
Sbjct: 350 attgagccttcacttagagctggtacaacggctgatatttctttgagagaaga 402
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>emb|AL928943.9| Mouse DNA sequence from clone RP23-435J15 on chromosome 2, complete
             sequence
          Length = 160516

 Score = 42.1 bits (21), Expect = 0.14
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 35    gcagttctttgagagaagacaaggc 59
             |||||||||||||||||| ||||||
Sbjct: 93120 gcagttctttgagagaagccaaggc 93144
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>gb|AC145089.7| Mus musculus chromosome 3, clone RP23-268K12, complete sequence
          Length = 167657

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 30    agctggcagttctttgaga 48
             |||||||||||||||||||
Sbjct: 18504 agctggcagttctttgaga 18522
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>ref|XM_424940.1| PREDICTED: Gallus gallus similar to RIKEN cDNA 5830433M19
           (LOC427364), mRNA
          Length = 1370

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 39  ttctttgagagaagacaag 57
           |||||||||||||||||||
Sbjct: 951 ttctttgagagaagacaag 969
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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 18      agctgatactgcagctggc 36
               |||||||||||||||||||
Sbjct: 3976764 agctgatactgcagctggc 3976782
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>emb|BX571658.1| Wolinella succinogenes, complete genome; segment 2/7
          Length = 346792

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 39    ttctttgagagaagacaag 57
             |||||||||||||||||||
Sbjct: 63163 ttctttgagagaagacaag 63181
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>emb|AL772247.19| Mouse DNA sequence from clone DN-316O2 on chromosome 3 Contains two
             ribosomal protein, large, P0 (Rplp0) pseudogene, complete
             sequence
          Length = 104206

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 30    agctggcagttctttgaga 48
             |||||||||||||||||||
Sbjct: 36919 agctggcagttctttgaga 36901
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>emb|BX934080.1| Gallus gallus finished cDNA, clone ChEST57f9
          Length = 970

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 39  ttctttgagagaagacaag 57
           |||||||||||||||||||
Sbjct: 551 ttctttgagagaagacaag 569
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>emb|BX932541.1| Gallus gallus finished cDNA, clone ChEST596p20
          Length = 950

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 39  ttctttgagagaagacaag 57
           |||||||||||||||||||
Sbjct: 532 ttctttgagagaagacaag 550
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>gb|AC157988.5| Mus musculus chromosome 3, clone RP23-149E4, complete sequence
          Length = 216259

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 30     agctggcagttctttgaga 48
              |||||||||||||||||||
Sbjct: 175446 agctggcagttctttgaga 175464
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>ref|XM_422364.1| PREDICTED: Gallus gallus similar to hypothetical protein FLJ20729
           (LOC424527), mRNA
          Length = 1281

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 36  cagttctttgagagaaga 53
           ||||||||||||||||||
Sbjct: 949 cagttctttgagagaaga 966
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>ref|XM_713504.1| Candida albicans SC5314 hypothetical protein (CaO19_10031), mRNA
          Length = 4716

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 36   cagttctttgagagaaga 53
            ||||||||||||||||||
Sbjct: 3798 cagttctttgagagaaga 3781
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>ref|XM_713421.1| Candida albicans SC5314 glucan synthase (CaO19_2495), mRNA
          Length = 4716

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 36   cagttctttgagagaaga 53
            ||||||||||||||||||
Sbjct: 3798 cagttctttgagagaaga 3781
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>gb|AC154581.2| Mus musculus BAC clone RP23-381G5 from chromosome 13, complete sequence
          Length = 200156

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 34     ggcagttctttgagagaa 51
              ||||||||||||||||||
Sbjct: 121751 ggcagttctttgagagaa 121768
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>ref|XM_851421.1| PREDICTED: Canis familiaris similar to tetratricopeptide repeat
           domain 17, transcript variant 6 (LOC475940), mRNA
          Length = 3378

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 32  ctggcagttctttgagag 49
           ||||||||||||||||||
Sbjct: 252 ctggcagttctttgagag 269
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>ref|XM_851382.1| PREDICTED: Canis familiaris similar to tetratricopeptide repeat
           domain 17, transcript variant 5 (LOC475940), mRNA
          Length = 3220

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 32  ctggcagttctttgagag 49
           ||||||||||||||||||
Sbjct: 328 ctggcagttctttgagag 345
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>ref|XM_851337.1| PREDICTED: Canis familiaris similar to tetratricopeptide repeat
            domain 17, transcript variant 4 (LOC475940), mRNA
          Length = 1856

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 32   ctggcagttctttgagag 49
            ||||||||||||||||||
Sbjct: 1665 ctggcagttctttgagag 1682
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>ref|XM_851295.1| PREDICTED: Canis familiaris similar to tetratricopeptide repeat
            domain 17, transcript variant 3 (LOC475940), mRNA
          Length = 1896

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 32   ctggcagttctttgagag 49
            ||||||||||||||||||
Sbjct: 1665 ctggcagttctttgagag 1682
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>gb|AC084383.1| Mus musculus BAC clone RP23-10B20 from 17, complete sequence
          Length = 203589

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 39    ttctttgagagaagacaa 56
             ||||||||||||||||||
Sbjct: 14832 ttctttgagagaagacaa 14849
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>emb|AL592063.10| Human DNA sequence from clone RP11-575F9 on chromosome 1, complete
            sequence
          Length = 160396

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 17   gagctgatactgcagctg 34
            ||||||||||||||||||
Sbjct: 1951 gagctgatactgcagctg 1934
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>emb|AL590612.6| Human DNA sequence from clone RP11-330A8 on chromosome 1, complete
            sequence
          Length = 5780

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 17   gagctgatactgcagctg 34
            ||||||||||||||||||
Sbjct: 5730 gagctgatactgcagctg 5713
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>emb|AL357712.10| Human DNA sequence from clone GS1-756B1 on chromosome 10 Contains a
             novel pseudogene (FLJ34719 FLJ14936) and the 3' end of a
             novel gene, complete sequence
          Length = 110645

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 27    tgcagctggcagttcttt 44
             ||||||||||||||||||
Sbjct: 77575 tgcagctggcagttcttt 77592
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>emb|CR457482.5| Zebrafish DNA sequence from clone CH211-159P3 in linkage group 15,
              complete sequence
          Length = 158288

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 7      ccttcacttcgagctgat 24
              ||||||||||||||||||
Sbjct: 106596 ccttcacttcgagctgat 106579
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>gb|AC120349.5| Homo sapiens chromosome 18, clone RP11-380M21, complete sequence
          Length = 183055

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 36    cagttctttgagagaagacaag 57
             ||||||||||||||||| ||||
Sbjct: 12875 cagttctttgagagaagtcaag 12896
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>dbj|D88816.1| Candida albicans GSL1 gene for glucan synthase, complete cds
          Length = 4358

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 36   cagttctttgagagaaga 53
            ||||||||||||||||||
Sbjct: 4004 cagttctttgagagaaga 3987
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>emb|CR524365.1| Gallus gallus finished cDNA, clone ChEST120j8
          Length = 927

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 36  cagttctttgagagaaga 53
           ||||||||||||||||||
Sbjct: 814 cagttctttgagagaaga 831
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>emb|AJ303140.1|HSA303140 Homo sapiens NOD2 gene for LRR-containing protein, exons 1-11
          Length = 163319

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 42     tttgagagaagacaaggc 59
              ||||||||||||||||||
Sbjct: 129783 tttgagagaagacaaggc 129766
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>gb|AC007728.4|AC007728 Homo sapiens chromosome 16 clone RP11-327F22, complete sequence
          Length = 168271

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 42     tttgagagaagacaaggc 59
              ||||||||||||||||||
Sbjct: 120150 tttgagagaagacaaggc 120167
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>gb|AC011740.7| Homo sapiens BAC clone RP11-106G13 from 2, complete sequence
          Length = 168991

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 27    tgcagctggcagttcttt 44
             ||||||||||||||||||
Sbjct: 32834 tgcagctggcagttcttt 32851
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>gb|AC090695.14| Homo sapiens chromosome 15, clone RP11-192M23, complete sequence
          Length = 173632

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 19     gctgatactgcagctggc 36
              ||||||||||||||||||
Sbjct: 166647 gctgatactgcagctggc 166630
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>gb|AC091713.4| Papio anubis clone RP41-217F22, complete sequence
          Length = 215961

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 26     ctgcagctggcagttctttgag 47
              |||||||||||| |||||||||
Sbjct: 152726 ctgcagctggcacttctttgag 152747
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>gb|AC087762.20| Homo sapiens chromosome 15, clone RP11-76I7, complete sequence
          Length = 104836

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 19   gctgatactgcagctggc 36
            ||||||||||||||||||
Sbjct: 1525 gctgatactgcagctggc 1508
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>gb|AC097004.3| Papio anubis clone RP41-290N16, complete sequence
          Length = 166987

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 26    ctgcagctggcagttctttgag 47
             |||||||||||| |||||||||
Sbjct: 19596 ctgcagctggcacttctttgag 19617
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>ref|XM_317489.2| Anopheles gambiae str. PEST ENSANGP00000012301
           (ENSANGG00000009812), partial mRNA
          Length = 849

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 15  tcgagctgatactgcagc 32
           ||||||||||||||||||
Sbjct: 281 tcgagctgatactgcagc 298
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>dbj|AP001876.5| Homo sapiens genomic DNA, chromosome 11 clone:CTD-2544I7, complete
              sequence
          Length = 197086

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 27     tgcagctggcagttcttt 44
              ||||||||||||||||||
Sbjct: 114993 tgcagctggcagttcttt 114976
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>dbj|AP000908.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-711K22, complete
             sequence
          Length = 149132

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 17    gagctgatactgcagctg 34
             ||||||||||||||||||
Sbjct: 43452 gagctgatactgcagctg 43435
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>dbj|AP000652.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-8G5, complete
             sequence
          Length = 115530

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 27    tgcagctggcagttcttt 44
             ||||||||||||||||||
Sbjct: 25570 tgcagctggcagttcttt 25553
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>gb|AC105042.7| Homo sapiens chromosome 18, clone CTD-2544E12, complete sequence
          Length = 159505

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 36    cagttctttgagagaagacaag 57
             ||||||||||||||||| ||||
Sbjct: 15075 cagttctttgagagaagtcaag 15054
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>emb|CT009754.11| Mouse DNA sequence from clone RP23-5P19 on chromosome 13, complete
              sequence
          Length = 255133

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 34     ggcagttctttgagagaa 51
              ||||||||||||||||||
Sbjct: 204596 ggcagttctttgagagaa 204613
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>emb|AL645947.9| Mouse DNA sequence from clone RP23-338K8 on chromosome 11, complete
              sequence
          Length = 235868

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 27     tgcagctggcagttcttt 44
              ||||||||||||||||||
Sbjct: 109726 tgcagctggcagttcttt 109743
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>emb|AL772236.11| Mouse DNA sequence from clone RP23-98F14 on chromosome 4, complete
             sequence
          Length = 207430

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 28    gcagctggcagttctttgagag 49
             |||||| |||||||||||||||
Sbjct: 63187 gcagctagcagttctttgagag 63208


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 538,168
Number of Sequences: 3902068
Number of extensions: 538168
Number of successful extensions: 36628
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36567
Number of HSP's gapped (non-prelim): 60
length of query: 61
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 40
effective length of database: 17,151,101,840
effective search space: 686044073600
effective search space used: 686044073600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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