ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags5p24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KRA45_HUMAN (Q9BYR2) Keratin-associated protein 4-5 (Keratin-ass... 28 4.3
2KRA44_HUMAN (Q9BYR3) Keratin-associated protein 4-4 (Keratin-ass... 28 5.6
3KR111_HUMAN (Q8IUC1) Keratin-associated protein 11-1 (High sulfu... 28 5.6
4HIS4_THET8 (Q5SJ49) 1-(5-phosphoribosyl)-5-[(5-phosphoribosylami... 28 7.3
5PDXB_ERWCT (Q6D2N5) Erythronate-4-phosphate dehydrogenase (EC 1.... 28 7.3
6HIS4_THET2 (P62356) 1-(5-phosphoribosyl)-5-[(5-phosphoribosylami... 27 9.6
7Y245_TREPA (O83273) Hypothetical protein TP0245 27 9.6

>KRA45_HUMAN (Q9BYR2) Keratin-associated protein 4-5 (Keratin-associated protein|
           4.5) (Ultrahigh sulfur keratin-associated protein 4.5)
          Length = 186

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 185 THVRTTCCTPTACSPQ 232
           T  RTTCC P+ C PQ
Sbjct: 29  TCCRTTCCRPSCCKPQ 44



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>KRA44_HUMAN (Q9BYR3) Keratin-associated protein 4-4 (Keratin-associated protein|
           4.4) (Ultrahigh sulfur keratin-associated protein 4.4)
          Length = 166

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 185 THVRTTCCTPTACSPQ 232
           T  RTTCC P+ C PQ
Sbjct: 94  TCCRTTCCRPSCCRPQ 109



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>KR111_HUMAN (Q8IUC1) Keratin-associated protein 11-1 (High sulfur|
           keratin-associated protein 11.1)
          Length = 163

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 188 HVRTTCCTPTACSP 229
           H + TCC PTAC P
Sbjct: 55  HCQETCCEPTACQP 68



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>HIS4_THET8 (Q5SJ49) 1-(5-phosphoribosyl)-5-[(5-|
           phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase (EC 5.3.1.16)
           (Phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase)
          Length = 235

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 64  VKDPVWVMNVVSSYGPNSLGVVYD-RGLIGTNHDWCEAFSTYPRTYDLLHA 213
           VKDP  +  ++ + GP+ L V  D RGL      W EA S      DLL A
Sbjct: 105 VKDPGLLARMLEAVGPDRLAVALDARGLEVVVSGWQEAVSA--SALDLLRA 153



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>PDXB_ERWCT (Q6D2N5) Erythronate-4-phosphate dehydrogenase (EC 1.1.1.-)|
          Length = 378

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 285 KDAVHLNKHKLHLASVRFCGEQAVGVQQVVRTWVRGEGLA 166
           +    +N + L  +SV+F G    G   V  TW+   G+A
Sbjct: 44  RSVTKVNANLLFGSSVKFVGSATAGTDHVDDTWLNANGIA 83



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>HIS4_THET2 (P62356) 1-(5-phosphoribosyl)-5-[(5-|
           phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase (EC 5.3.1.16)
           (Phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase)
          Length = 235

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 64  VKDPVWVMNVVSSYGPNSLGVVYD-RGLIGTNHDWCEAFSTYPRTYDLLHA 213
           VKDP  +  ++ + GP+ L V  D RGL      W EA S      DLL A
Sbjct: 105 VKDPGLLARMLEAVGPDRLAVALDARGLEVVVSGWQEAASA--SALDLLRA 153



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>Y245_TREPA (O83273) Hypothetical protein TP0245|
          Length = 1151

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 19/82 (23%), Positives = 36/82 (43%)
 Frame = +1

Query: 94  VSSYGPNSLGVVYDRGLIGTNHDWCEAFSTYPRTYDLLHADGLFTAESHRCEMKFVLVEM 273
           V + G  S G+V+  G    N  +   F+T+   Y     +GL+T ++H  + +   + +
Sbjct: 472 VIATGNISSGLVHYEGTGALNPAFASRFNTFEYDYPPQSTEGLYTNQAHPEKNELFRIIL 531

Query: 274 DRILRPTGYAIIRDNPYFLDSV 339
            R+    G   + D    LD +
Sbjct: 532 ARLASSGGSLCLPDIDGSLDKL 553


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,299,321
Number of Sequences: 219361
Number of extensions: 802867
Number of successful extensions: 2490
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2483
length of database: 80,573,946
effective HSP length: 90
effective length of database: 60,831,456
effective search space used: 1459954944
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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