ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6e24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466300.1| Oryza sativa (japonica cultivar-group), mRNA 452 e-124
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 188 1e-44
3dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic D... 188 1e-44
4gb|AY105125.1| Zea mays PCO095985 mRNA sequence 98 4e-17
5gb|AY112360.1| Zea mays CL9234_1 mRNA sequence 80 9e-12
6dbj|AK068378.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 1e-10
7dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 70 8e-09
8dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic D... 70 8e-09
9ref|NM_202435.1| Arabidopsis thaliana unknown protein AT1G77810 ... 52 0.002
10ref|NM_106430.3| Arabidopsis thaliana transferase, transferring ... 52 0.002
11gb|BT010541.1| Arabidopsis thaliana At1g77810 gene, complete cds 52 0.002
12dbj|AK221383.1| Arabidopsis thaliana gene, similar to Avr9 elici... 52 0.002
13dbj|AK175483.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 52 0.002
14ref|XM_873143.1| PREDICTED: Bos taurus similar to G protein-coup... 44 0.48
15ref|XM_615772.2| PREDICTED: Bos taurus similar to G protein-coup... 44 0.48
16emb|CR719109.2|CNS0GHT7 Tetraodon nigroviridis full-length cDNA 44 0.48
17emb|CR712958.2|CNS0GD2I Tetraodon nigroviridis full-length cDNA 44 0.48
18gb|BC110241.1| Bos taurus cDNA clone IMAGE:8068839, partial cds 44 0.48
19gb|AC079914.8| Homo sapiens chromosome 11, clone RP11-479C24, co... 42 1.9
20gb|AC026884.7| Homo sapiens chromosome 10 clone RP11-123G9, comp... 42 1.9
21gb|AC021761.8| Homo sapiens chromosome 11, clone RP11-361M6, com... 42 1.9
22ref|XM_396776.2| PREDICTED: Apis mellifera similar to ENSANGP000... 42 1.9
23dbj|AB104529.1| Pisum sativum LKA mRNA for brassinosteroid recep... 42 1.9
24emb|AL928706.6| Mouse DNA sequence from clone RP23-54E16 on chro... 42 1.9
25ref|NM_001034820.1| Gallus gallus endothelial protein C receptor... 40 7.5
26gb|AY349019.1| Neodiprion lecontei NPV, complete genome 40 7.5
27gb|AF111103.1|MMHC322F16 Mouse major histocompatibility complex ... 40 7.5
28emb|CR703141.2|CNS0G5HT Tetraodon nigroviridis full-length cDNA 40 7.5
29gb|BT003543.1| Drosophila melanogaster RE04975 full insert cDNA 40 7.5
30ref|XM_964307.1| PREDICTED: Tribolium castaneum similar to CG323... 40 7.5
31gb|AC163438.3| Mus musculus chromosome 8, clone RP23-278M23, com... 40 7.5
32ref|NM_164924.1| Drosophila melanogaster CG31716-RG, transcript ... 40 7.5
33ref|NM_164923.1| Drosophila melanogaster CG31716-RE, transcript ... 40 7.5
34ref|NM_164922.1| Drosophila melanogaster CG31716-RD, transcript ... 40 7.5
35ref|NM_164921.1| Drosophila melanogaster CG31716-RC, transcript ... 40 7.5
36ref|NM_164920.1| Drosophila melanogaster CG31716-RB, transcript ... 40 7.5
37ref|NM_164919.1| Drosophila melanogaster CG31716-RA, transcript ... 40 7.5
38dbj|AB204800.1| Gallus gallus PROCR mRNA for endothelial protein... 40 7.5
39gb|AC119807.11| Mus musculus chromosome 8, clone RP23-167I14, co... 40 7.5
40gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 255... 40 7.5
41gb|AC087216.1|AC087216 Mus musculus strain 129svj chromosome 17 ... 40 7.5
42dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 40 7.5
43dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 7.5
44emb|AJ234685.1|HVU234685 Hordeum vulgare genomic DNA fragment; c... 40 7.5
45gb|AC007451.1|AC007451 Drosophila melanogaster, chromosome 2L, r... 40 7.5
46gb|AE003628.2| Drosophila melanogaster chromosome 2L, section 37... 40 7.5
47emb|CR974473.23| Mouse DNA sequence from clone RP23-38P5 on chro... 40 7.5
48emb|AL772207.4| Mouse DNA sequence from clone RP23-91G17 on chro... 40 7.5 
>ref|XM_466300.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1203

 Score =  452 bits (228), Expect = e-124
 Identities = 471/551 (85%), Gaps = 4/551 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   tgctgctgctctgcgccttcagcttcgggctcggcatgctcttcaccaaccgcttctgga 64
           |||||||||||||||| ||| ||||||| |||||||||||||||||  | || || ||||
Sbjct: 59  tgctgctgctctgcgcattctgcttcggcctcggcatgctcttcacggatcgtttttgga 118

                                                                       
Query: 65  cagcaccaaatgccaataaccacatcatgtcccaacgcaggagacaagatcaggagttgc 124
           | |||||  || ||| ||||||||||||||| |||||| |||| || |||  ||||||||
Sbjct: 119 cggcacctgataccagtaaccacatcatgtctcaacgccggaggcaggatagggagttgc 178

                                                                       
Query: 125 aacttgtgtcagaggattgcaatacaaagaggaagcatgaggggcacaaggtatataatg 184
           ||||  | |||||||||||||||||||||||||||||||  |   |||||| | ||||||
Sbjct: 179 aactcatatcagaggattgcaatacaaagaggaagcatggagaagacaagg-acataatg 237

                                                                       
Query: 185 ggagaggtaacgaggacccatgaagccatacaattgttggataagtcaatctcaacgctg 244
           || |||||||| | |||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct: 238 ggtgaggtaaccaagacccacgaagccatacaattgttggataagtccatctccacgctg 297

                                                                       
Query: 245 cagatggagcttgcagcaaagcgaagcacgttggaactggtccgctctggtgtg---cca 301
           |||||||| |||||||| ||||| |||||| |||||||  ||||  ||||||     |||
Sbjct: 298 cagatggaacttgcagctaagcgtagcacgctggaacttctccgtgctggtggctcacca 357

                                                                       
Query: 302 gtaacttcagaaactagccaaccaaggaaaaaggcattcgtggtcgttggagttaacacc 361
           ||||| ||||||||||||||||||||||| |||||||| || ||  ||||||| ||||||
Sbjct: 358 gtaacctcagaaactagccaaccaaggaagaaggcatttgttgtaattggagtaaacacc 417

                                                                       
Query: 362 gcattcagtagccgcaagcgtcgggattcagtccgggagacatggatgcctcaaggtgag 421
           |||||||| ||||||||||| || |||||||| || ||||||||||||||||||||||  
Sbjct: 418 gcattcagcagccgcaagcgccgtgattcagtgcgagagacatggatgcctcaaggtgca 477

                                                                       
Query: 422 aagctgttgcagcttgaagaacaaaagggaattgttatccgcttcactataggccatagt 481
           ||||||  ||| || ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 478 aagctgcagcaactagaagatcaaaagggaattgttatccgcttcactatagggcatagt 537

                                                                       
Query: 482 gcaacatccaatagtatattggacaaagcaatanatgcanaagatgcacaacatcacgac 541
           || |||||||| ||||||||||||||||| ||| || || | ||||| || ||||  |||
Sbjct: 538 gctacatccaacagtatattggacaaagctatagattcagaggatgctcagcatcgtgac 597

                      
Query: 542 ttncttagact 552
           || ||||||||
Sbjct: 598 tttcttagact 608
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  188 bits (95), Expect = 1e-44
 Identities = 178/205 (86%), Gaps = 3/205 (1%)
 Strand = Plus / Minus

                                                                            
Query: 217      attgttggataagtcaatctcaacgctgcagatggagcttgcagcaaagcgaagcacgtt 276
                ||||||||||||||| ||||| |||||||||||||| |||||||| ||||| |||||| |
Sbjct: 21572452 attgttggataagtccatctccacgctgcagatggaacttgcagctaagcgtagcacgct 21572393

                                                                            
Query: 277      ggaactggtccgctctggtgtg---ccagtaacttcagaaactagccaaccaaggaaaaa 333
                ||||||  ||||  ||||||     |||||||| ||||||||||||||||||||||| ||
Sbjct: 21572392 ggaacttctccgtgctggtggctcaccagtaacctcagaaactagccaaccaaggaagaa 21572333

                                                                            
Query: 334      ggcattcgtggtcgttggagttaacaccgcattcagtagccgcaagcgtcgggattcagt 393
                |||||| || ||  ||||||| |||||||||||||| ||||||||||| || ||||||||
Sbjct: 21572332 ggcatttgttgtaattggagtaaacaccgcattcagcagccgcaagcgccgtgattcagt 21572273

                                         
Query: 394      ccgggagacatggatgcctcaaggt 418
                 || |||||||||||||||||||||
Sbjct: 21572272 gcgagagacatggatgcctcaaggt 21572248



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                            
Query: 81       taaccacatcatgtcccaacgcaggagacaagatcaggagttgcaacttgtgtcagagga 140
                ||||||||||||||| |||||| |||| || |||  ||||||||||||  | ||||||||
Sbjct: 21572785 taaccacatcatgtctcaacgccggaggcaggatagggagttgcaactcatatcagagga 21572726

                                
Query: 141      ttgcaatacaaagagg 156
                ||||||||||||||||
Sbjct: 21572725 ttgcaatacaaagagg 21572710



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                            
Query: 437      gaagaacaaaagggaattgttatccgcttcactataggccatag 480
                ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 21571576 gaagatcaaaagggaattgttatccgcttcactatagggcatag 21571533



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                              
Query: 5        tgctgctgctctgcgccttcagcttcgggctcggcatgctcttcac 50
                |||||||||||||||| ||| ||||||| |||||||||||||||||
Sbjct: 21574052 tgctgctgctctgcgcattctgcttcggcctcggcatgctcttcac 21574007



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                            
Query: 479      agtgcaacatccaatagtatattggacaaagcaatanatgcanaagatgcacaacatcac 538
                ||||| |||||||| ||||||||||||||||| ||| || || | ||||| || ||||  
Sbjct: 21570888 agtgctacatccaacagtatattggacaaagctatagattcagaggatgctcagcatcgt 21570829

                              
Query: 539      gacttncttagact 552
                ||||| ||||||||
Sbjct: 21570828 gactttcttagact 21570815



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                      
Query: 179      ataatgggagaggtaacgaggacccatgaagccataca 216
                |||||||| |||||||| | |||||| |||||||||||
Sbjct: 21572594 ataatgggtgaggtaaccaagacccacgaagccataca 21572557
to top
>dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0020D05
          Length = 158760

 Score =  188 bits (95), Expect = 1e-44
 Identities = 178/205 (86%), Gaps = 3/205 (1%)
 Strand = Plus / Minus

                                                                         
Query: 217   attgttggataagtcaatctcaacgctgcagatggagcttgcagcaaagcgaagcacgtt 276
             ||||||||||||||| ||||| |||||||||||||| |||||||| ||||| |||||| |
Sbjct: 61402 attgttggataagtccatctccacgctgcagatggaacttgcagctaagcgtagcacgct 61343

                                                                         
Query: 277   ggaactggtccgctctggtgtg---ccagtaacttcagaaactagccaaccaaggaaaaa 333
             ||||||  ||||  ||||||     |||||||| ||||||||||||||||||||||| ||
Sbjct: 61342 ggaacttctccgtgctggtggctcaccagtaacctcagaaactagccaaccaaggaagaa 61283

                                                                         
Query: 334   ggcattcgtggtcgttggagttaacaccgcattcagtagccgcaagcgtcgggattcagt 393
             |||||| || ||  ||||||| |||||||||||||| ||||||||||| || ||||||||
Sbjct: 61282 ggcatttgttgtaattggagtaaacaccgcattcagcagccgcaagcgccgtgattcagt 61223

                                      
Query: 394   ccgggagacatggatgcctcaaggt 418
              || |||||||||||||||||||||
Sbjct: 61222 gcgagagacatggatgcctcaaggt 61198



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                         
Query: 81    taaccacatcatgtcccaacgcaggagacaagatcaggagttgcaacttgtgtcagagga 140
             ||||||||||||||| |||||| |||| || |||  ||||||||||||  | ||||||||
Sbjct: 61735 taaccacatcatgtctcaacgccggaggcaggatagggagttgcaactcatatcagagga 61676

                             
Query: 141   ttgcaatacaaagagg 156
             ||||||||||||||||
Sbjct: 61675 ttgcaatacaaagagg 61660



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                         
Query: 437   gaagaacaaaagggaattgttatccgcttcactataggccatag 480
             ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 60526 gaagatcaaaagggaattgttatccgcttcactatagggcatag 60483



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                           
Query: 5     tgctgctgctctgcgccttcagcttcgggctcggcatgctcttcac 50
             |||||||||||||||| ||| ||||||| |||||||||||||||||
Sbjct: 63002 tgctgctgctctgcgcattctgcttcggcctcggcatgctcttcac 62957



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                         
Query: 479   agtgcaacatccaatagtatattggacaaagcaatanatgcanaagatgcacaacatcac 538
             ||||| |||||||| ||||||||||||||||| ||| || || | ||||| || ||||  
Sbjct: 59838 agtgctacatccaacagtatattggacaaagctatagattcagaggatgctcagcatcgt 59779

                           
Query: 539   gacttncttagact 552
             ||||| ||||||||
Sbjct: 59778 gactttcttagact 59765



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 179   ataatgggagaggtaacgaggacccatgaagccataca 216
             |||||||| |||||||| | |||||| |||||||||||
Sbjct: 61544 ataatgggtgaggtaaccaagacccacgaagccataca 61507
to top
>gb|AY105125.1| Zea mays PCO095985 mRNA sequence
          Length = 753

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 127/154 (82%)
 Strand = Plus / Plus

                                                                       
Query: 402 catggatgcctcaaggtgagaagctgttgcagcttgaagaacaaaagggaattgttatcc 461
           |||||||||||||||| || ||||||   ||  | |||||||| |||||||| |||||||
Sbjct: 1   catggatgcctcaaggagaaaagctgcaacaattagaagaacagaagggaatagttatcc 60

                                                                       
Query: 462 gcttcactataggccatagtgcaacatccaatagtatattggacaaagcaatanatgcan 521
           |||||||||| || || ||||| |||||||| |||||| |||||||||| ||| || || 
Sbjct: 61  gcttcactatcgggcacagtgctacatccaacagtatactggacaaagctatagattcag 120

                                             
Query: 522 aagatgcacaacatcacgacttncttagactgga 555
           | || || || ||||| ||||| ||||| |||||
Sbjct: 121 aggacgctcagcatcatgactttcttaggctgga 154
to top
>gb|AY112360.1| Zea mays CL9234_1 mRNA sequence
          Length = 1070

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 131/164 (79%)
 Strand = Plus / Minus

                                                                       
Query: 392 gtccgggagacatggatgcctcaaggtgagaagctgttgcagcttgaagaacaaaaggga 451
           |||||||||||||||||||||||||| |     |||   ||  | |||||||||||||||
Sbjct: 924 gtccgggagacatggatgcctcaaggagnnnnnctgcaacaattagaagaacaaaaggga 865

                                                                       
Query: 452 attgttatccgcttcactataggccatagtgcaacatccaatagtatattggacaaagca 511
           || || |||||||||||||| || || ||||| |||||  | |||||| |||||||||| 
Sbjct: 864 atagtaatccgcttcactatcgggcacagtgctacatctgacagtatactggacaaagct 805

                                                       
Query: 512 atanatgcanaagatgcacaacatcacgacttncttagactgga 555
           ||| || || | || || || ||||| ||||| ||||| |||||
Sbjct: 804 atagattcagaggacgctcagcatcatgactttcttaggctgga 761
to top
>dbj|AK068378.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146K16, full
           insert sequence
          Length = 1689

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 59/66 (89%)
 Strand = Plus / Plus

                                                                       
Query: 356 aacaccgcattcagtagccgcaagcgtcgggattcagtccgggagacatggatgcctcaa 415
           ||||| |||||||||||| | |||||||||||||| || ||| |||| ||||||||||||
Sbjct: 463 aacactgcattcagtagcaggaagcgtcgggattctgttcggcagacctggatgcctcaa 522

                 
Query: 416 ggtgag 421
           ||||||
Sbjct: 523 ggtgag 528



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 13  ctctgcgccttcagcttcgggctcggcatgct 44
           |||||||| ||||||||||| |||||||||||
Sbjct: 133 ctctgcgcgttcagcttcggcctcggcatgct 164
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                            
Query: 356      aacaccgcattcagtagccgcaagcgtcgggattcagtccgggagacatggatgcctcaa 415
                ||||| |||||||||||| | |||||||||||||| || ||| |||| ||||||||||||
Sbjct: 16927935 aacactgcattcagtagcaggaagcgtcgggattctgttcggcagacctggatgcctcaa 16927876

                   
Query: 416      ggt 418
                |||
Sbjct: 16927875 ggt 16927873



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                                
Query: 13       ctctgcgccttcagcttcgggctcggcatgct 44
                |||||||| ||||||||||| |||||||||||
Sbjct: 16929086 ctctgcgcgttcagcttcggcctcggcatgct 16929055
to top
>dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0488D02
          Length = 154537

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                         
Query: 356   aacaccgcattcagtagccgcaagcgtcgggattcagtccgggagacatggatgcctcaa 415
             ||||| |||||||||||| | |||||||||||||| || ||| |||| ||||||||||||
Sbjct: 57748 aacactgcattcagtagcaggaagcgtcgggattctgttcggcagacctggatgcctcaa 57689

                
Query: 416   ggt 418
             |||
Sbjct: 57688 ggt 57686



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 13    ctctgcgccttcagcttcgggctcggcatgct 44
             |||||||| ||||||||||| |||||||||||
Sbjct: 58899 ctctgcgcgttcagcttcggcctcggcatgct 58868
to top
>ref|NM_202435.1| Arabidopsis thaliana unknown protein AT1G77810 transcript variant
           AT1G77810.2 mRNA, complete cds
          Length = 1442

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 401 acatggatgcctcaaggtgagaagct 426
           ||||||||||||||||||||||||||
Sbjct: 418 acatggatgcctcaaggtgagaagct 443
to top
>ref|NM_106430.3| Arabidopsis thaliana transferase, transferring glycosyl groups
           AT1G77810 transcript variant AT1G77810.1 mRNA, complete
           cds
          Length = 1460

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 401 acatggatgcctcaaggtgagaagct 426
           ||||||||||||||||||||||||||
Sbjct: 418 acatggatgcctcaaggtgagaagct 443
to top
>gb|BT010541.1| Arabidopsis thaliana At1g77810 gene, complete cds
          Length = 1182

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 401 acatggatgcctcaaggtgagaagct 426
           ||||||||||||||||||||||||||
Sbjct: 418 acatggatgcctcaaggtgagaagct 443
to top
>dbj|AK221383.1| Arabidopsis thaliana gene, similar to Avr9 elicitor response
           protein emb|CAA06925, complete cds, clone: RAFL25-40-C13
          Length = 1639

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 401 acatggatgcctcaaggtgagaagct 426
           ||||||||||||||||||||||||||
Sbjct: 530 acatggatgcctcaaggtgagaagct 555
to top
>dbj|AK175483.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL21-91-I19
          Length = 1639

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 401 acatggatgcctcaaggtgagaagct 426
           ||||||||||||||||||||||||||
Sbjct: 530 acatggatgcctcaaggtgagaagct 555
to top
>ref|XM_873143.1| PREDICTED: Bos taurus similar to G protein-coupled receptor family
           C, group 5, member C isoform a, transcript variant 2
           (LOC535664), mRNA
          Length = 1876

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 3   gctgctgctgctctgcgccttc 24
           ||||||||||||||||||||||
Sbjct: 779 gctgctgctgctctgcgccttc 800
to top
>ref|XM_615772.2| PREDICTED: Bos taurus similar to G protein-coupled receptor family
           C, group 5, member C isoform a, transcript variant 1
           (LOC535664), mRNA
          Length = 1826

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 3   gctgctgctgctctgcgccttc 24
           ||||||||||||||||||||||
Sbjct: 729 gctgctgctgctctgcgccttc 750
to top
>emb|CR719109.2|CNS0GHT7 Tetraodon nigroviridis full-length cDNA
          Length = 601

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 74  atgccaataaccacatcatgtc 95
           ||||||||||||||||||||||
Sbjct: 563 atgccaataaccacatcatgtc 542
to top
>emb|CR712958.2|CNS0GD2I Tetraodon nigroviridis full-length cDNA
          Length = 601

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 74  atgccaataaccacatcatgtc 95
           ||||||||||||||||||||||
Sbjct: 563 atgccaataaccacatcatgtc 542
to top
>gb|BC110241.1| Bos taurus cDNA clone IMAGE:8068839, partial cds
          Length = 1964

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 3   gctgctgctgctctgcgccttc 24
           ||||||||||||||||||||||
Sbjct: 734 gctgctgctgctctgcgccttc 755
to top
>gb|AC079914.8| Homo sapiens chromosome 11, clone RP11-479C24, complete sequence
          Length = 91995

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 100   cgcaggagacaagatcaggag 120
             |||||||||||||||||||||
Sbjct: 39493 cgcaggagacaagatcaggag 39513
to top
>gb|AC026884.7| Homo sapiens chromosome 10 clone RP11-123G9, complete sequence
          Length = 142093

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 147   tacaaagaggaagcatgaggg 167
             |||||||||||||||||||||
Sbjct: 45992 tacaaagaggaagcatgaggg 46012
to top
>gb|AC021761.8| Homo sapiens chromosome 11, clone RP11-361M6, complete sequence
          Length = 182789

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 100   cgcaggagacaagatcaggag 120
             |||||||||||||||||||||
Sbjct: 15423 cgcaggagacaagatcaggag 15403
to top
>ref|XM_396776.2| PREDICTED: Apis mellifera similar to ENSANGP00000020490 (LOC413331),
            mRNA
          Length = 3025

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 484  aacatccaatagtatattgga 504
            |||||||||||||||||||||
Sbjct: 2441 aacatccaatagtatattgga 2461
to top
>dbj|AB104529.1| Pisum sativum LKA mRNA for brassinosteroid receptor, complete cds
          Length = 3901

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 214  acaattgttggataagtcaatctca 238
            |||||||||||| ||||||||||||
Sbjct: 2241 acaattgttggagaagtcaatctca 2217
to top
>emb|AL928706.6| Mouse DNA sequence from clone RP23-54E16 on chromosome 2, complete
              sequence
          Length = 205358

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 150    aaagaggaagcatgaggggcacaag 174
              |||||||| ||||||||||||||||
Sbjct: 170244 aaagaggatgcatgaggggcacaag 170220
to top
>ref|NM_001034820.1| Gallus gallus endothelial protein C receptor (PROCR), mRNA
          Length = 1046

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  aggctgctgctgctctgcgc 20
          ||||||||||||||||||||
Sbjct: 25 aggctgctgctgctctgcgc 44
to top
>gb|AY349019.1| Neodiprion lecontei NPV, complete genome
          Length = 81755

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 203   catgaagccatacaattgtt 222
             ||||||||||||||||||||
Sbjct: 48871 catgaagccatacaattgtt 48890
to top
>gb|AF111103.1|MMHC322F16 Mouse major histocompatibility complex region containing the Q region
             of class I
          Length = 159179

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 436   tgaagaacaaaagggaattg 455
             ||||||||||||||||||||
Sbjct: 53704 tgaagaacaaaagggaattg 53685
to top
>emb|CR703141.2|CNS0G5HT Tetraodon nigroviridis full-length cDNA
          Length = 1517

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 3   gctgctgctgctctgcgcct 22
           ||||||||||||||||||||
Sbjct: 149 gctgctgctgctctgcgcct 130
to top
>gb|BT003543.1| Drosophila melanogaster RE04975 full insert cDNA
          Length = 3635

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 62   ggacagcaccaaatgccaat 81
            ||||||||||||||||||||
Sbjct: 3098 ggacagcaccaaatgccaat 3117
to top
>ref|XM_964307.1| PREDICTED: Tribolium castaneum similar to CG3234-PA, isoform A
            (LOC657878), mRNA
          Length = 3324

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 434  cttgaagaacaaaagggaat 453
            ||||||||||||||||||||
Sbjct: 1017 cttgaagaacaaaagggaat 1036
to top
>gb|AC163438.3| Mus musculus chromosome 8, clone RP23-278M23, complete sequence
          Length = 186102

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 435    ttgaagaacaaaagggaatt 454
              ||||||||||||||||||||
Sbjct: 147676 ttgaagaacaaaagggaatt 147695
to top
>ref|NM_164924.1| Drosophila melanogaster CG31716-RG, transcript variant G (CG31716),
            mRNA
          Length = 3373

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 62   ggacagcaccaaatgccaat 81
            ||||||||||||||||||||
Sbjct: 2848 ggacagcaccaaatgccaat 2867
to top
>ref|NM_164923.1| Drosophila melanogaster CG31716-RE, transcript variant E (CG31716),
            mRNA
          Length = 3562

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 62   ggacagcaccaaatgccaat 81
            ||||||||||||||||||||
Sbjct: 3037 ggacagcaccaaatgccaat 3056
to top
>ref|NM_164922.1| Drosophila melanogaster CG31716-RD, transcript variant D (CG31716),
            mRNA
          Length = 3490

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 62   ggacagcaccaaatgccaat 81
            ||||||||||||||||||||
Sbjct: 2965 ggacagcaccaaatgccaat 2984
to top
>ref|NM_164921.1| Drosophila melanogaster CG31716-RC, transcript variant C (CG31716),
            mRNA
          Length = 3560

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 62   ggacagcaccaaatgccaat 81
            ||||||||||||||||||||
Sbjct: 3035 ggacagcaccaaatgccaat 3054
to top
>ref|NM_164920.1| Drosophila melanogaster CG31716-RB, transcript variant B (CG31716),
            mRNA
          Length = 3399

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 62   ggacagcaccaaatgccaat 81
            ||||||||||||||||||||
Sbjct: 2874 ggacagcaccaaatgccaat 2893
to top
>ref|NM_164919.1| Drosophila melanogaster CG31716-RA, transcript variant A (CG31716),
            mRNA
          Length = 3623

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 62   ggacagcaccaaatgccaat 81
            ||||||||||||||||||||
Sbjct: 3098 ggacagcaccaaatgccaat 3117
to top
>dbj|AB204800.1| Gallus gallus PROCR mRNA for endothelial protein C receptor,
          complete cds
          Length = 1046

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  aggctgctgctgctctgcgc 20
          ||||||||||||||||||||
Sbjct: 25 aggctgctgctgctctgcgc 44
to top
>gb|AC119807.11| Mus musculus chromosome 8, clone RP23-167I14, complete sequence
          Length = 203248

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 435    ttgaagaacaaaagggaatt 454
              ||||||||||||||||||||
Sbjct: 173500 ttgaagaacaaaagggaatt 173481
to top
>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 77     ccaataaccacatcatgtcc 96
              ||||||||||||||||||||
Sbjct: 402421 ccaataaccacatcatgtcc 402440
to top
>gb|AC087216.1|AC087216 Mus musculus strain 129svj chromosome 17 clone GS1-11M9, complete
             sequence
          Length = 226594

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 436   tgaagaacaaaagggaattg 455
             ||||||||||||||||||||
Sbjct: 98959 tgaagaacaaaagggaattg 98940
to top
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 21      cttcagcttcgggctcggca 40
               ||||||||||||||||||||
Sbjct: 2576497 cttcagcttcgggctcggca 2576478
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 2       ggctgctgctgctctgcgccttca 25
               |||||||||||||| |||||||||
Sbjct: 4859907 ggctgctgctgctcggcgccttca 4859884
to top
>emb|AJ234685.1|HVU234685 Hordeum vulgare genomic DNA fragment; clone MWG0969.uni
          Length = 380

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 2   ggctgctgctgctctgcgcc 21
           ||||||||||||||||||||
Sbjct: 359 ggctgctgctgctctgcgcc 340
to top
>gb|AC007451.1|AC007451 Drosophila melanogaster, chromosome 2L, region 31D1-31F4, BAC clones
             DS00953 and BACR48K04, complete sequence
          Length = 161754

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    ggacagcaccaaatgccaat 81
             ||||||||||||||||||||
Sbjct: 62066 ggacagcaccaaatgccaat 62085
to top
>gb|AE003628.2| Drosophila melanogaster chromosome 2L, section 37 of 83 of the complete
              sequence
          Length = 269102

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 62     ggacagcaccaaatgccaat 81
              ||||||||||||||||||||
Sbjct: 164334 ggacagcaccaaatgccaat 164353
to top
>emb|CR974473.23| Mouse DNA sequence from clone RP23-38P5 on chromosome 17, complete
             sequence
          Length = 219471

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 436   tgaagaacaaaagggaattg 455
             ||||||||||||||||||||
Sbjct: 53020 tgaagaacaaaagggaattg 53001
to top
>emb|AL772207.4| Mouse DNA sequence from clone RP23-91G17 on chromosome 4, complete
              sequence
          Length = 148320

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      tgctgctgctctgcgccttc 24
              ||||||||||||||||||||
Sbjct: 127259 tgctgctgctctgcgccttc 127240


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,550,366
Number of Sequences: 3902068
Number of extensions: 4550366
Number of successful extensions: 87041
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86869
Number of HSP's gapped (non-prelim): 171
length of query: 555
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 532
effective length of database: 17,143,297,704
effective search space: 9120234378528
effective search space used: 9120234378528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top