Clone Name	bags5p17
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	dbj|AB007627.2| Oryza sativa (japonica cultivar-group) HOS58 mRN...	375	e-100
2	dbj|AB061817.1| Oryza sativa (japonica cultivar-group) HOS58 mRN...	375	e-100
3	emb|AM182386.1| Zea mays partial mRNA for KNOX family class 2 ho...	266	7e-68
4	emb|AM182385.1| Zea mays mRNA for KNOX family class 2 homeodomai...	266	7e-68
5	gb|DQ056239.1| Zea mays knotted 1-type homeobox protein 6 (knox6...	258	2e-65
6	gb|AY105115.1| Zea mays PCO075632 mRNA sequence	232	1e-57
7	dbj|AB007628.2| Oryza sativa (japonica cultivar-group) HOS59 mRN...	200	4e-48
8	dbj|AB061818.1| Oryza sativa (japonica cultivar-group) HOS59 mRN...	200	4e-48
9	gb|AY104273.1| Zea mays PCO147946 mRNA sequence	170	3e-39
10	dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...	149	1e-32
11	dbj|AP004066.2| Oryza sativa (japonica cultivar-group) genomic D...	149	1e-32
12	dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D...	125	2e-25
13	dbj|AP004008.3| Oryza sativa (japonica cultivar-group) genomic D...	125	2e-25
14	dbj|AP003517.3| Oryza sativa (japonica cultivar-group) genomic D...	125	2e-25
15	gb|AF544051.1| Hordeum vulgare knotted 7 (kn7) mRNA, complete cds	123	7e-25
16	dbj|AB004797.1| Nicotiana tabacum NTH23 mRNA, complete cds	101	2e-18
17	emb|Z29073.1|BNHDIBOX B.napus hd1 mRNA for homeodomain-containin...	100	1e-17
18	gb|AF384375.1|AF384375 Porteresia coarctata homeobox protein mRN...	96	2e-16
19	dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic D...	94	6e-16
20	gb|BT014214.1| Lycopersicon esculentum clone 133392F, mRNA sequence	92	2e-15
21	gb|AY667451.1| Selaginella kraussiana KNOTTED1-like protein (KNO...	92	2e-15
22	gb|AF000142.1|LEAF000142 Lycopersicon esculentum class II knotte...	92	2e-15
23	emb|Z71980.1|MDKNOX1 M.domestica mRNA for knotted1-like homeobox...	78	4e-11
24	ref|NM_001036861.1| Arabidopsis thaliana KNAT3 (KNOTTED1-LIKE HO...	74	6e-10
25	ref|NM_122431.2| Arabidopsis thaliana KNAT3 (KNOTTED1-LIKE HOMEO...	74	6e-10
26	gb|BT000139.1| Arabidopsis thaliana KNAT3 homeodomain protein (A...	74	6e-10
27	gb|AY120762.1| Arabidopsis thaliana KNAT3 homeodomain protein (A...	74	6e-10
28	gb|AF285148.1|AF285148 Physcomitrella patens class 2 KNOTTED1-li...	74	6e-10
29	emb|BX833728.1|CNS09ZB6 Arabidopsis thaliana Full-length cDNA Co...	74	6e-10
30	gb|AY086091.1| Arabidopsis thaliana clone 21240 mRNA, complete s...	74	6e-10
31	emb|X92392.1|ATKNAT3 A.thaliana mRNA for KNAT3 homeobox protein	74	6e-10
32	ref|NM_121144.3| Arabidopsis thaliana KNAT4; transcription facto...	70	9e-09
33	emb|X92393.1|ATKNAT4 A.thaliana mRNA for KNAT4 homeobox protein	70	9e-09
34	emb|BX831217.1|CNS0A1MO Arabidopsis thaliana Full-length cDNA Co...	70	9e-09
35	emb|BX831225.1|CNS09YM8 Arabidopsis thaliana Full-length cDNA Co...	70	9e-09
36	dbj|AK118296.1| Arabidopsis thaliana At5g11060 mRNA for putative...	70	9e-09
37	gb|U76409.1|LEU76409 Lycopersicon esculentum homeobox 1 protein ...	70	9e-09
38	ref|NM_104977.2| Arabidopsis thaliana KNAT7; DNA binding / trans...	68	3e-08
39	gb|AF308451.1|AF308451 Arabidopsis thaliana homeodomain transcri...	68	3e-08
40	gb|AY084398.1| Arabidopsis thaliana clone 106887 mRNA, complete ...	68	3e-08
41	dbj|AK118326.1| Arabidopsis thaliana At1g62990 mRNA for putative...	68	3e-08
42	emb|Y13191.1|HVWL8MRNA Hordeum vulgare mRNA for hypothetical pro...	68	3e-08
43	ref|XM_481348.1| Oryza sativa (japonica cultivar-group), mRNA	66	1e-07
44	emb|BX831253.1|CNS09YM7 Arabidopsis thaliana Full-length cDNA Co...	66	1e-07
45	emb|BX841646.1|CNS09YHV Arabidopsis thaliana Full-length cDNA Co...	66	1e-07
46	gb|AC011000.3|F16P17 Sequence of BAC F16P17 from Arabidopsis tha...	62	2e-06
47	dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D...	58	3e-05
48	dbj|D49704.2| Oryza sativa (japonica cultivar-group) OSH45 gene,...	58	3e-05
49	dbj|AP005390.2| Oryza sativa (japonica cultivar-group) genomic D...	58	3e-05
50	dbj|AP003918.3| Oryza sativa (japonica cultivar-group) genomic D...	58	3e-05
51	dbj|AK111645.1| Oryza sativa (japonica cultivar-group) cDNA clon...	58	3e-05
52	dbj|AB043957.1| Ceratopteris richardii mRNA for CRKNOX3, complet...	56	1e-04
53	gb|DQ317423.1| Leersia virginica KNOTTED1-like homeodomain prote...	56	1e-04
54	gb|DQ317419.1| Pennisetum glaucum KNOTTED1 homeodomain protein (...	56	1e-04
55	gb|AF011554.1|AF011554 Oryza officinalis homeobox protein (Knott...	56	1e-04
56	emb|BX817936.1|CNS0ABA1 Arabidopsis thaliana Full-length cDNA Co...	54	5e-04
57	gb|U76410.1|LEU76410 Lycopersicon esculentum homeobox 2 protein ...	54	5e-04
58	emb|CT009553.4| M.truncatula DNA sequence from clone MTH2-115C19...	52	0.002
59	ref|XM_462847.1| Oryza sativa (japonica cultivar-group), predic...	50	0.008
60	dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...	50	0.008
61	gb|AF288769.1|AF288769 Physcomitrella patens homeobox protein (M...	50	0.008
62	gb|AF288767.1|AF288767 Physcomitrella patens homeobox protein (M...	50	0.008
63	dbj|AP003206.4| Oryza sativa (japonica cultivar-group) genomic D...	50	0.008
64	dbj|AP002881.2| Oryza sativa (japonica cultivar-group) genomic D...	50	0.008
65	dbj|AB028883.1| Oryza sativa mRNA for knotted1-type homeobox pro...	50	0.008
66	dbj|AB007626.1| Oryza sativa (japonica cultivar-group) HOS16 mRN...	50	0.008
67	ref|XM_469600.1| Oryza sativa (japonica cultivar-group), mRNA	48	0.032
68	gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3	48	0.032
69	gb|AC145380.3| Oryza sativa chromosome 3 BAC OSJNBa0013A09 genom...	48	0.032
70	gb|AY312169.1| Zea mays homeobox transcription factor KNOTTED1 (...	48	0.032
71	emb|X83518.1|HVKNOX3 H.vulgare Knox3 gene	48	0.032
72	emb|X61308.1|ZMKN1 Z.mays Knotted-1 (Kn-1) gene	48	0.032
73	gb|AY260164.1| Zea mays KNOTTED1 (kn1) gene, complete cds	48	0.032
74	dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...	48	0.032
75	dbj|AB182945.1| Triticum aestivum Wknox1d gene for KN1 homeobox ...	48	0.032
76	dbj|AB182944.1| Triticum aestivum Wknox1b gene for KN1 homeobox ...	48	0.032
77	dbj|AB182943.1| Triticum aestivum Wknox1a gene for KN1 homeobox ...	48	0.032
78	gb|DQ317421.1| Chasmanthium latifolium KNOTTED1 homeodomain prot...	48	0.032
79	gb|DQ317420.1| Setaria italica KNOTTED1 homeodomain protein (KN1...	48	0.032
80	gb|DQ317418.1| Panicum miliaceum KNOTTED1 homeodomain protein (K...	48	0.032
81	gb|DQ317417.1| Sorghum bicolor KNOTTED1 homeodomain protein (KN1...	48	0.032
82	gb|AF224500.1|AF224500 Triticum aestivum KNOTTED-1-like homeobox...	48	0.032
83	gb|AF224499.1|AF224499 Triticum aestivum KNOTTED-1-like homeobox...	48	0.032
84	gb|AF224498.1|AF224498 Triticum aestivum KNOTTED-1-like homeobox...	48	0.032
85	dbj|AK107637.1| Oryza sativa (japonica cultivar-group) cDNA clon...	48	0.032
86	gb|AY107752.1| Zea mays PCO065671 mRNA sequence	48	0.032
87	gb|AF003599.1|AF003599 Oryza sativa homeobox protein gene, parti...	48	0.032
88	gb|AF022390.1|AF022390 Hordeum vulgare knotted class 1 homeodoma...	48	0.032
89	dbj|D16507.1|RICOSH1 Oryza sativa (japonica cultivar-group) OSH1...	48	0.032
90	ref|NM_119356.3| Arabidopsis thaliana KNAT5 (ARABIDOPSIS THALIAN...	46	0.13
91	gb|AC133865.2| Homo sapiens chromosome 1 clone RP11-93N20, compl...	46	0.13
92	gb|AE014823.1| Plasmodium falciparum 3D7 chromosome 14 section 8...	46	0.13
93	emb|AL021636.3|ATF10N7 Arabidopsis thaliana DNA chromosome 4, BA...	46	0.13
94	gb|AF306661.1|AF306661 Arabidopsis thaliana homeodomain transcri...	46	0.13
95	emb|BX826856.1|CNS0A3CU Arabidopsis thaliana Full-length cDNA Co...	46	0.13
96	gb|AC068669.21| Homo sapiens chromosome 17, clone RP11-749I16, c...	46	0.13
97	emb|X92394.1|ATKNAT5 A.thaliana mRNA for KNAT5 homeobox protein	46	0.13
98	emb|AL161580.2|ATCHRIV76 Arabidopsis thaliana DNA chromosome 4, ...	46	0.13
99	dbj|D43962.1| Arabidopsis thaliana mRNA for homeodomein containi...	46	0.13
100	ref|XM_528702.1| PREDICTED: Pan troglodytes similar to RPGR-inte...	44	0.50
101	gb|AY781901.1| Saccharum hybrid cultivar isolate c53a homeobox p...	44	0.50
102	ref|XM_469241.1| Oryza sativa (japonica cultivar-group), mRNA	44	0.50
103	ref|XM_476506.1| Oryza sativa (japonica cultivar-group), mRNA	44	0.50
104	gb|AC130598.2| Oryza sativa (japonica cultivar-group) chromosome...	44	0.50
105	gb|AF457125.1|AF457124S2 Zea mays knotted1-like homeodomain prot...	44	0.50
106	gb|AF457123.1|AF457122S2 Zea mays knotted1-like homeodomain prot...	44	0.50
107	gb|AF457121.1|AF457120S2 Zea mays knotted1-like homeodomain prot...	44	0.50
108	gb|AC133450.6| Oryza sativa chromosome 3 BAC OSJNBa0072F13 genom...	44	0.50
109	gb|AC159197.3| Mus musculus BAC clone RP23-421P10 from chromosom...	44	0.50
110	gb|AC090683.7| Oryza sativa chromosome 3 BAC OSJNBa0035I24 genom...	44	0.50
111	gb|AF544047.1| Hordeum vulgare knotted 4 (kn4) gene, partial cds	44	0.50
112	gb|BC039089.1| Homo sapiens retinitis pigmentosa GTPase regulato...	44	0.50
113	gb|AC149474.15| Medicago truncatula clone mth2-122l24, complete ...	44	0.50
114	gb|AY312168.1| Zea mays homeobox transcription factor GNARLY1 (g...	44	0.50
115	emb|AL365436.26| Human DNA sequence from clone RP11-74C1 on chro...	44	0.50
116	gb|AY601274.1| Chelidonium majus shoot meristemless-like protein...	44	0.50
117	gb|AC114971.2| Homo sapiens chromosome 5 clone RP11-3H15, comple...	44	0.50
118	dbj|AB071664.1| Oryza sativa (indica cultivar-group) mRNA for tr...	44	0.50
119	gb|AF457119.1| Zea mays knotted1-like homeodomain protein ligule...	44	0.50
120	gb|AF457118.1| Zea mays knotted1-like homeodomain protein ligule...	44	0.50
121	ref|NM_020366.2| Homo sapiens retinitis pigmentosa GTPase regula...	44	0.50
122	gb|AC116369.5| Oryza sativa chromosome 3 BAC OSJNBb0113I20 genom...	44	0.50
123	gb|DQ056237.1| Zea mays clone cp15 knotted 1-type homeobox prote...	44	0.50
124	gb|DQ056234.1| Zea mays knotted 1-type homeobox protein 4 (knox4...	44	0.50
125	dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...	44	0.50
126	dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D...	44	0.50
127	dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D...	44	0.50
128	dbj|AB071499.1| Oryza sativa (japonica cultivar-group) gene for ...	44	0.50
129	dbj|AB071497.1| Oryza sativa (japonica cultivar-group) gene for ...	44	0.50
130	dbj|AB071489.1| Oryza sativa (japonica cultivar-group) gene for ...	44	0.50
131	dbj|AB071470.1| Oryza sativa (japonica cultivar-group) gene for ...	44	0.50
132	dbj|AB071468.1| Oryza sativa (japonica cultivar-group) gene for ...	44	0.50
133	dbj|AB071467.1| Oryza sativa (japonica cultivar-group) gene for ...	44	0.50
134	dbj|AB071466.1| Oryza sativa (japonica cultivar-group) gene for ...	44	0.50
135	dbj|AB071465.1| Oryza sativa (japonica cultivar-group) gene for ...	44	0.50
136	dbj|AB071464.1| Oryza sativa (japonica cultivar-group) gene for ...	44	0.50
137	dbj|AB071463.1| Oryza sativa (japonica cultivar-group) gene for ...	44	0.50
138	dbj|AB071457.1| Oryza sativa (japonica cultivar-group) gene for ...	44	0.50
139	dbj|AB071456.1| Oryza sativa (japonica cultivar-group) gene for ...	44	0.50
140	dbj|AB071455.1| Oryza sativa (japonica cultivar-group) gene for ...	44	0.50
141	dbj|AB071454.1| Oryza sativa (japonica cultivar-group) gene for ...	44	0.50
142	dbj|AB071452.1| Oryza sativa (japonica cultivar-group) gene for ...	44	0.50
143	gb|AF260257.1|AF260257 Homo sapiens RPGR-interacting protein mRN...	44	0.50
144	dbj|AP006172.4| Oryza sativa (japonica cultivar-group) genomic D...	44	0.50
145	dbj|AP006562.3| Oryza sativa (japonica cultivar-group) genomic D...	44	0.50
146	dbj|AP005861.3| Oryza sativa (japonica cultivar-group) genomic D...	44	0.50
147	dbj|AK111878.1| Oryza sativa (japonica cultivar-group) cDNA clon...	44	0.50
148	dbj|AK111877.1| Oryza sativa (japonica cultivar-group) cDNA clon...	44	0.50
149	gb|AF003527.1|AF003527 Avena vaviloviana knotted-1 homeobox prot...	44	0.50
150	dbj|AK107296.1| Oryza sativa (japonica cultivar-group) cDNA clon...	44	0.50
151	gb|AY107753.1| Zea mays PCO112760 mRNA sequence	44	0.50
152	gb|AY106531.1| Zea mays PCO074163 mRNA sequence	44	0.50
153	gb|AY106441.1| Zea mays PCO135030 mRNA sequence	44	0.50
154	gb|AF100455.1|AF100455 Zea mays knotted class 1 homeodomain prot...	44	0.50
155	emb|AL135744.4|CNS01DVC Human chromosome 14 DNA sequence BAC R-5...	44	0.50
156	gb|AF050181.1|AF050181 Oryza sativa strain Indica IR58 KNOX clas...	44	0.50
157	gb|AF050180.1|AF050180 Oryza sativa strain Indica IR58 KNOX clas...	44	0.50
158	emb|AJ417058.1|HSA417058 Homo sapiens partial RPGRIP1 gene for R...	44	0.50
159	dbj|AP004301.2| Oryza sativa (japonica cultivar-group) genomic D...	44	0.50
160	gb|AF003601.1|AF003601 Oryza sativa homeobox protein gene, parti...	44	0.50
161	gb|AF011552.1|AF011552 Hordeum marinum homeobox protein (Knotted...	44	0.50
162	dbj|AP004939.1| Lotus japonicus genomic DNA, chromosome 1, clone...	44	0.50
163	gb|L44133.1|MZERS1R Zea mays RS1 mRNA, complete cds	44	0.50
164	emb|AJ417067.1|HSA417067 Homo sapiens mRNA for RPGR-interacting ...	44	0.50
165	dbj|AB016071.1| Oryza sativa (japonica cultivar-group) mRNA, com...	44	0.50
166	dbj|AB071513.1| Oryza meridionalis gene for transcription factor...	44	0.50
167	dbj|AB071512.1| Oryza longistaminata gene for transcription fact...	44	0.50
168	dbj|AB071511.1| Oryza meridionalis gene for transcription factor...	44	0.50
169	dbj|AB071510.1| Oryza longistaminata gene for transcription fact...	44	0.50
170	dbj|AB071509.1| Oryza barthii gene for transcription factor OSH3...	44	0.50
171	dbj|AB071508.1| Oryza barthii gene for transcription factor OSH3...	44	0.50
172	dbj|AB071507.1| Oryza glumaepatula gene for transcription factor...	44	0.50
173	dbj|AB071506.1| Oryza glumaepatula gene for transcription factor...	44	0.50
174	dbj|AB071505.1| Oryza glaberrima gene for transcription factor O...	44	0.50
175	dbj|AB071504.1| Oryza glaberrima gene for transcription factor O...	44	0.50
176	dbj|AB071498.1| Oryza glaberrima gene for transcription factor O...	44	0.50
177	dbj|AB071481.1| Oryza rufipogon gene for transcription factor OS...	44	0.50
178	dbj|AB071480.1| Oryza rufipogon gene for transcription factor OS...	44	0.50
179	dbj|AB071479.1| Oryza rufipogon gene for transcription factor OS...	44	0.50
180	dbj|AB071478.1| Oryza rufipogon gene for transcription factor OS...	44	0.50
181	dbj|AB071477.1| Oryza rufipogon gene for transcription factor OS...	44	0.50
182	dbj|AB071476.1| Oryza rufipogon gene for transcription factor OS...	44	0.50
183	dbj|AB071475.1| Oryza rufipogon gene for transcription factor OS...	44	0.50
184	dbj|AB071474.1| Oryza rufipogon gene for transcription factor OS...	44	0.50
185	dbj|AB071473.1| Oryza rufipogon gene for transcription factor OS...	44	0.50
186	dbj|AB071472.1| Oryza rufipogon gene for transcription factor OS...	44	0.50
187	dbj|AB071471.1| Oryza rufipogon gene for transcription factor OS...	44	0.50
188	dbj|AB028886.1| Oryza sativa mRNA for knotted1-type homeobox pro...	44	0.50
189	dbj|AB028885.1| Oryza sativa mRNA for knotted1-type homeobox pro...	44	0.50
190	dbj|AB028884.1| Oryza sativa mRNA for knotted1-type homeobox pro...	44	0.50
191	dbj|AB007624.1| Oryza sativa (japonica cultivar-group) HOS9 mRNA...	44	0.50
192	dbj|AB007623.1| Oryza sativa (japonica cultivar-group) Hos3 mRNA...	44	0.50
193	dbj|AB071897.1| Oryza sativa (indica cultivar-group) gene for Tr...	44	0.50
194	dbj|AB071503.1| Oryza sativa (indica cultivar-group) gene for tr...	44	0.50
195	dbj|AB071502.1| Oryza sativa (indica cultivar-group) gene for tr...	44	0.50
196	dbj|AB071501.1| Oryza sativa (indica cultivar-group) gene for tr...	44	0.50
197	dbj|AB071500.1| Oryza sativa (indica cultivar-group) gene for tr...	44	0.50
198	dbj|AB071491.1| Oryza sativa (japonica cultivar-group) gene for ...	44	0.50
199	dbj|AB071490.1| Oryza sativa (japonica cultivar-group) gene for ...	44	0.50
200	dbj|AB071488.1| Oryza sativa (japonica cultivar-group) gene for ...	44	0.50
201	dbj|AB071487.1| Oryza sativa (indica cultivar-group) gene for tr...	44	0.50
202	dbj|AB071486.1| Oryza sativa (indica cultivar-group) gene for tr...	44	0.50
203	dbj|AB071485.1| Oryza sativa (indica cultivar-group) gene for tr...	44	0.50
204	dbj|AB071484.1| Oryza sativa (indica cultivar-group) gene for tr...	44	0.50
205	dbj|AB071483.1| Oryza sativa (indica cultivar-group) gene for tr...	44	0.50
206	dbj|AB071482.1| Oryza sativa (indica cultivar-group) gene for tr...	44	0.50
207	dbj|AB071462.1| Oryza sativa (japonica cultivar-group) gene for ...	44	0.50
208	dbj|AB071460.1| Oryza sativa (japonica cultivar-group) gene for ...	44	0.50
209	dbj|AB071458.1| Oryza sativa (japonica cultivar-group) gene for ...	44	0.50
210	dbj|AB071453.1| Oryza sativa (japonica cultivar-group) gene for ...	44	0.50
211	dbj|AB071451.1| Oryza sativa (japonica cultivar-group) gene for ...	44	0.50
212	dbj|AB071450.1| Oryza sativa (indica cultivar-group) gene for tr...	44	0.50
213	dbj|AB071449.1| Oryza sativa (indica cultivar-group) gene for tr...	44	0.50
214	dbj|AB071448.1| Oryza sativa (indica cultivar-group) gene for tr...	44	0.50
215	dbj|AB071446.1| Oryza sativa (indica cultivar-group) gene for tr...	44	0.50
216	dbj|AB071445.1| Oryza sativa (indica cultivar-group) gene for tr...	44	0.50
217	dbj|AB071444.1| Oryza sativa (indica cultivar-group) gene for tr...	44	0.50
218	dbj|AB071443.1| Oryza sativa (indica cultivar-group) gene for tr...	44	0.50
219	dbj|AB071442.1| Oryza sativa (indica cultivar-group) gene for tr...	44	0.50
220	dbj|AB071441.1| Oryza sativa (indica cultivar-group) gene for tr...	44	0.50
221	dbj|AB071440.1| Oryza sativa (indica cultivar-group) gene for tr...	44	0.50
222	dbj|AB071439.1| Oryza sativa (indica cultivar-group) gene for tr...	44	0.50
223	gb|AC160860.2| Homo sapiens chromosome 11 clone WI2-3817J24, com...	42	2.0
224	gb|AC004782.1| Homo sapiens chromosome 5, BAC clone 205e20 (LBNL...	42	2.0
225	gb|AC164635.5| Mus musculus BAC clone RP23-65G17 from chromosome...	42	2.0
226	gb|AF544046.1| Hordeum vulgare knotted 2 (kn2) gene, partial cds	42	2.0
227	gb|AC124365.5| Mus musculus BAC clone RP24-539F12 from chromosom...	42	2.0
228	gb|AY456694.1| Solanum tuberosum putative ethylene receptor (ERS...	42	2.0
229	gb|AC091001.3| Papio anubis clone RP41-36M16, complete sequence	42	2.0
230	gb|AC122451.3| Mus musculus BAC clone RP24-252G15 from 16, compl...	42	2.0
231	gb|AC109138.10| Mus musculus chromosome 19, clone RP23-41B18, co...	42	2.0
232	emb|AL162724.16| Human DNA sequence from clone RP11-121A14 on ch...	42	2.0
233	emb|AL138686.14| Human DNA sequence from clone RP11-189B4 on chr...	42	2.0
234	gb|AY152830.1| Felis catus clone BAC 463h11 major histocompatibl...	42	2.0
235	emb|AL353032.1|ATT20N10 Arabidopsis thaliana DNA chromosome 3, B...	42	2.0
236	emb|AL163527.1|ATF17J16 Arabidopsis thaliana DNA chromosome 3, B...	42	2.0
237	emb|AL833523.1|HSM804836 Homo sapiens genomic DNA; cDNA DKFZp686...	42	2.0
238	gb|AC013543.16| Homo sapiens chromosome 8, clone RP11-317H6, com...	42	2.0
239	gb|AF060592.1|AF060592 Gossypium barbadense clone pXP059 repetit...	42	2.0
240	gb|AC023866.8| Homo sapiens chromosome 8, clone RP11-787D18, com...	42	2.0
241	gb|AC012634.8| Homo sapiens chromosome 5 clone CTD-2185H17, comp...	42	2.0
242	dbj|AK083771.1| Mus musculus 12 days embryo spinal ganglion cDNA...	42	2.0
243	dbj|AB043956.1| Ceratopteris richardii mRNA for CRKNOX2, complet...	42	2.0
244	gb|DQ317424.1| Pharus lappulaceus KNOTTED1-like homeodomain prot...	42	2.0
245	dbj|AP007216.1| Homo sapiens genomic DNA, chromosome 11 clone:RP...	42	2.0
246	gb|AC122362.5| Mus musculus BAC clone RP23-430N1 from chromosome...	42	2.0
247	emb|CR936328.1| Medicago truncatula chromosome 5 clone mth4-1f18...	42	2.0
248	emb|CT009697.13| Mouse DNA sequence from clone RP23-131H5 on chr...	42	2.0
249	gb|AC122201.4| Mus musculus BAC clone RP23-64I9 from 6, complete...	42	2.0
250	emb|AL731828.22| Mouse DNA sequence from clone RP23-50L5 on chro...	42	2.0
251	emb|AJ937762.1| Uncultured gamma proteobacterium fosmid clone b1...	42	2.0
252	gb|AC120173.9| Mus musculus chromosome 1, clone RP24-485J8, comp...	40	7.8
253	gb|AC110909.10| Mus musculus chromosome 7, clone RP24-186G5, com...	40	7.8
254	gb|AC165958.2| Mus musculus BAC clone RP23-417I20 from chromosom...	40	7.8
255	gb|AC169508.1| Mus musculus BAC clone RP23-167I21 from chromosom...	40	7.8
256	gb|AC006259.1| Arabidopsis thaliana BAC F21J6 from chromosome V,...	40	7.8
257	gb|AC163207.6| Mus musculus chromosome 1, clone RP24-137J11, com...	40	7.8
258	gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence	40	7.8
259	gb|AC105379.11| Trypanosoma brucei chromosome 3 clone RPCI93-30P...	40	7.8
260	gb|AC115060.9| Mus musculus chromosome 1, clone RP24-395F2, comp...	40	7.8
261	gb|CP000017.1| Streptococcus pyogenes MGAS5005, complete genome	40	7.8
262	gb|AC159614.7| Mus musculus chromosome 1, clone RP24-305O23, com...	40	7.8
263	gb|AC182666.2| Populus trichocarpa clone Pop1-18F23, complete se...	40	7.8
264	gb|AE006551.1| Streptococcus pyogenes M1 GAS, section 80 of 167 ...	40	7.8
265	gb|AC146084.2| Pan troglodytes BAC clone RP43-56L21 from 7, comp...	40	7.8
266	gb|CP000260.1| Streptococcus pyogenes MGAS10270, complete genome	40	7.8
267	gb|AC134562.5| Mus musculus BAC clone RP24-120M11 from chromosom...	40	7.8
268	gb|AC125127.4| Mus musculus BAC clone RP24-286E4 from chromosome...	40	7.8
269	emb|CR376773.7| Zebrafish DNA sequence from clone CH211-23E22 in...	40	7.8
270	ref|XM_743898.1| Aspergillus fumigatus Af293 hypothetical protei...	40	7.8
271	emb|BX571728.14| Zebrafish DNA sequence from clone DKEY-210O7 in...	40	7.8
272	gb|AF544050.1| Hordeum vulgare knotted 6 (kn6) mRNA, partial cds	40	7.8
273	gb|AC124470.4| Mus musculus BAC clone RP24-174O2 from chromosome...	40	7.8
274	gb|AC129314.4| Mus musculus BAC clone RP23-365D12 from chromosom...	40	7.8
275	gb|AC122187.3| Mus musculus BAC clone RP23-21P2 from 1, complete...	40	7.8
276	gb|AC103645.6| Mus musculus chromosome 19, clone RP24-510J20, co...	40	7.8
277	gb|AC163161.4| Mus musculus BAC clone RP23-103A23 from chromosom...	40	7.8
278	emb|AL355303.16| Human DNA sequence from clone RP11-445P17 on ch...	40	7.8
279	emb|AL138894.11| Human DNA sequence from clone RP11-28O4 on chro...	40	7.8
280	gb|AC160464.3| Mus musculus chromosome 7, clone RP23-256J14, com...	40	7.8
281	gb|AC112917.3| Homo sapiens X BAC RP11-46C18 (Roswell Park Cance...	40	7.8
282	gb|AC182012.3| Otolemur garnettii clone CH256-376P14, complete s...	40	7.8
283	gb|AC159300.3| Mus musculus BAC clone RP23-242D23 from chromosom...	40	7.8
284	emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete ...	40	7.8
285	emb|AL663107.13| Mouse DNA sequence from clone RP23-465K20 on ch...	40	7.8
286	gb|AC139103.3| Homo sapiens chromosome 8, clone, complete sequence	40	7.8
287	emb|AL391222.1|ATT5K6 Arabidopsis thaliana DNA chromosome 5, BAC...	40	7.8
288	emb|BX323578.20| Zebrafish DNA sequence from clone DKEYP-81D2 in...	40	7.8
289	gb|AC156980.9| Mus musculus chromosome 1, clone RP23-191A12, com...	40	7.8
290	gb|AC008759.9| Homo sapiens chromosome 19 clone CTD-3116E22, com...	40	7.8
291	dbj|AK122974.1| Homo sapiens cDNA FLJ16721 fis, clone UTERU30016...	40	7.8
292	gb|AC013284.9| Homo sapiens chromosome 10 clone RP11-13E1, compl...	40	7.8
293	gb|AE010032.1| Streptococcus pyogenes strain MGAS8232, section 8...	40	7.8
294	gb|AC099791.2| Homo sapiens chromosome 1 clone RP11-430G17, comp...	40	7.8
295	gb|AC026739.7| Homo sapiens chromosome 5 clone CTD-2580L4, compl...	40	7.8
296	gb|AC110892.11| Mus musculus chromosome 3, clone RP24-490D9, com...	40	7.8
297	dbj|AK048340.1| Mus musculus 16 days embryo head cDNA, RIKEN ful...	40	7.8
298	gb|AC152954.1| Mus musculus 6 BAC RP23-296N5 (Roswell Park Cance...	40	7.8
299	emb|BX248509.4| Zebrafish DNA sequence from clone CH211-113O22, ...	40	7.8
300	gb|AE014074.1| Streptococcus pyogenes MGAS315, complete genome	40	7.8
301	gb|AC098617.5| Homo sapiens BAC clone RP11-56I1 from 2, complete...	40	7.8
302	gb|DQ317422.1| Lithachne humilis KNOTTED1 homeodomain protein (K...	40	7.8
303	dbj|BA000034.2| Streptococcus pyogenes SSI-1 DNA, complete genome	40	7.8
304	emb|AL833805.11| Mouse DNA sequence from clone RP23-158L19 on ch...	40	7.8
305	emb|BX004996.8| Zebrafish DNA sequence from clone CH211-268F23 i...	40	7.8
306	emb|BX000475.6| Zebrafish DNA sequence from clone CH211-112P5, c...	40	7.8
307	dbj|AB117934.1| Camellia sinensis CsGS1;3 mRNA for glutamine syn...	40	7.8
308	dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic D...	40	7.8
309	gb|AF170172.1|AF170172 Acetabularia acetabulum KNOX1 homeodomain...	40	7.8
310	gb|AC154591.2| Mus musculus BAC clone RP23-370M19 from 16, compl...	40	7.8
311	gb|AC116817.9| Mus musculus chromosome 1, clone RP24-357I7, comp...	40	7.8
312	gb|AC113951.13| Mus musculus chromosome 8, clone RP24-161A21, co...	40	7.8
313	gb|AC007461.8|AC007461 Homo sapiens chromosome 17, clone 84_E_24...	40	7.8
314	dbj|AP005976.2| Homo sapiens genomic DNA, chromosome 8qtel, clon...	40	7.8
315	emb|CT476831.7| Mouse DNA sequence from clone RP23-414J18 on chr...	40	7.8
316	emb|AL954371.6| Zebrafish DNA sequence from clone CH211-207O15, ...	40	7.8
317	gb|AC133169.3| Mus musculus BAC clone RP24-259I15 from 9, comple...	40	7.8
318	gb|AC126020.4| Mus musculus BAC clone RP24-364O7 from 8, complet...	40	7.8
319	emb|AL773540.18| Mouse DNA sequence from clone RP23-177L19 on ch...	40	7.8
320	emb|CT025583.7| Mouse DNA sequence from clone RP24-68O11 on chro...	40	7.8
321	emb|AL591544.30| Mouse DNA sequence from clone RP23-386D6 on chr...	40	7.8
322	emb|AJ131017.1|MMU131017 Mus musculus SCL gene locus	40	7.8
323	emb|AL596446.11| Mouse DNA sequence from clone RP23-386E10 on ch...	40	7.8
324	emb|AL772312.6| Mouse DNA sequence from clone RP23-91D16 on chro...	40	7.8
325	emb|AL670035.15| Mouse DNA sequence from clone RP23-295C20 on ch...	40	7.8
326	emb|AJ297131.1|MMAJ2971 Mus musculus SIL, MAP_17, CYP_a, SCL & C...	40	7.8

---

>dbj|AB007627.2| Oryza sativa (japonica cultivar-group) HOS58 mRNA, complete cds
          Length = 1105

 Score =  375 bits (189), Expect = e-100
 Identities = 329/375 (87%), Gaps = 3/375 (0%)
 Strand = Plus / Plus

                                                                       
Query: 16  tgaccgagggtgaacggtcgttgattgaacgtgttcgacatgagctgaagagcgagctta 75
           |||||||||||||| | || ||| |||| ||||| || ||||||||||||| ||||||||
Sbjct: 291 tgaccgagggtgaaagatccttggttgagcgtgtacggcatgagctgaagaacgagctta 350

                                                                       
Query: 76  aacaggggtacaaagaaaagctggttgatatcagggaggagatcatgcgaaagaggagag 135
           | |||||||||||||||||||| || ||||| ||||| |||||| | || ||| ||||||
Sbjct: 351 agcaggggtacaaagaaaagcttgtggatattagggaagagatccttcgcaagcggagag 410

                                                                       
Query: 136 ctggtaaacttcctggggatactgcagctacattgaaagcctggtggcaagctcattcca 195
           |||||||||||||||| ||||||||| ||| | | ||||| ||||||||||||||||| |
Sbjct: 411 ctggtaaacttcctggtgatactgcatctatactaaaagcttggtggcaagctcattcta 470

                                                                       
Query: 196 agtggccgtaccctactgaagacgacaaggctcgcctggtgcaggagacagggttacaac 255
           ||||||| ||||| ||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct: 471 agtggccatacccaactgaagacgacaaggcccgcctggtgcaggaaacggggttacaac 530

                                                                       
Query: 256 tgaagcagatcaataattggttcatcaaccaacgcaaacggaactggcacagcagcaaca 315
           ||||||| ||||| ||||||||||| |||||||||||||| ||||||||    |||||| 
Sbjct: 531 tgaagcaaatcaacaattggttcattaaccaacgcaaacgaaactggca---tagcaacc 587

                                                                       
Query: 316 cagcttcctctagtgaaaaaaccaagaagaaaagaaacgttacaggtaatgacggcgcgg 375
           |||| |||||| ||||||| ||||||||||||||||||||||||||| |||  || || |
Sbjct: 588 cagcatcctctggtgaaaagaccaagaagaaaagaaacgttacaggtgatggtggtgctg 647

                          
Query: 376 agcaatcgtggtaga 390
           |||||||||||||||
Sbjct: 648 agcaatcgtggtaga 662

---

>dbj|AB061817.1| Oryza sativa (japonica cultivar-group) HOS58 mRNA for KNOX family
           class 2 homeodomain protein, partial cds
          Length = 1085

 Score =  375 bits (189), Expect = e-100
 Identities = 329/375 (87%), Gaps = 3/375 (0%)
 Strand = Plus / Plus

                                                                       
Query: 16  tgaccgagggtgaacggtcgttgattgaacgtgttcgacatgagctgaagagcgagctta 75
           |||||||||||||| | || ||| |||| ||||| || ||||||||||||| ||||||||
Sbjct: 271 tgaccgagggtgaaagatccttggttgagcgtgtacggcatgagctgaagaacgagctta 330

                                                                       
Query: 76  aacaggggtacaaagaaaagctggttgatatcagggaggagatcatgcgaaagaggagag 135
           | |||||||||||||||||||| || ||||| ||||| |||||| | || ||| ||||||
Sbjct: 331 agcaggggtacaaagaaaagcttgtggatattagggaagagatccttcgcaagcggagag 390

                                                                       
Query: 136 ctggtaaacttcctggggatactgcagctacattgaaagcctggtggcaagctcattcca 195
           |||||||||||||||| ||||||||| ||| | | ||||| ||||||||||||||||| |
Sbjct: 391 ctggtaaacttcctggtgatactgcatctatactaaaagcttggtggcaagctcattcta 450

                                                                       
Query: 196 agtggccgtaccctactgaagacgacaaggctcgcctggtgcaggagacagggttacaac 255
           ||||||| ||||| ||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct: 451 agtggccatacccaactgaagacgacaaggcccgcctggtgcaggaaacggggttacaac 510

                                                                       
Query: 256 tgaagcagatcaataattggttcatcaaccaacgcaaacggaactggcacagcagcaaca 315
           ||||||| ||||| ||||||||||| |||||||||||||| ||||||||    |||||| 
Sbjct: 511 tgaagcaaatcaacaattggttcattaaccaacgcaaacgaaactggca---tagcaacc 567

                                                                       
Query: 316 cagcttcctctagtgaaaaaaccaagaagaaaagaaacgttacaggtaatgacggcgcgg 375
           |||| |||||| ||||||| ||||||||||||||||||||||||||| |||  || || |
Sbjct: 568 cagcatcctctggtgaaaagaccaagaagaaaagaaacgttacaggtgatggtggtgctg 627

                          
Query: 376 agcaatcgtggtaga 390
           |||||||||||||||
Sbjct: 628 agcaatcgtggtaga 642

---

>emb|AM182386.1| Zea mays partial mRNA for KNOX family class 2 homeodomain protein
           (knox7 gene), variant 2
          Length = 942

 Score =  266 bits (134), Expect = 7e-68
 Identities = 254/294 (86%)
 Strand = Plus / Plus

                                                                       
Query: 16  tgaccgagggtgaacggtcgttgattgaacgtgttcgacatgagctgaagagcgagctta 75
           |||| |||||||||||||| ||  |||| ||||| ||  | |||||||||| ||||||||
Sbjct: 287 tgacagagggtgaacggtccttagttgagcgtgtacggaaggagctgaagaacgagctta 346

                                                                       
Query: 76  aacaggggtacaaagaaaagctggttgatatcagggaggagatcatgcgaaagaggagag 135
           | ||||| ||||| |||||||| || ||||||||||| ||||||||||| ||| | || |
Sbjct: 347 agcagggttacaaggaaaagcttgtcgatatcagggaagagatcatgcgcaagcgcaggg 406

                                                                       
Query: 136 ctggtaaacttcctggggatactgcagctacattgaaagcctggtggcaagctcattcca 195
           |||| ||||||||||| ||||| ||| ||  | ||||||| |||||||||||||||||||
Sbjct: 407 ctgggaaacttcctggagataccgcatctgtactgaaagcttggtggcaagctcattcca 466

                                                                       
Query: 196 agtggccgtaccctactgaagacgacaaggctcgcctggtgcaggagacagggttacaac 255
           ||||||||||||| |||||||||||||||||  | ||||||||||| || ||||| || |
Sbjct: 467 agtggccgtacccaactgaagacgacaaggccaggctggtgcaggaaacggggttgcagc 526

                                                                 
Query: 256 tgaagcagatcaataattggttcatcaaccaacgcaaacggaactggcacagca 309
           | ||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct: 527 taaagcagatcaacaactggttcattaaccaacgcaaacggaactggcacagca 580

---

>emb|AM182385.1| Zea mays mRNA for KNOX family class 2 homeodomain protein (knox7
           gene)
          Length = 945

 Score =  266 bits (134), Expect = 7e-68
 Identities = 254/294 (86%)
 Strand = Plus / Plus

                                                                       
Query: 16  tgaccgagggtgaacggtcgttgattgaacgtgttcgacatgagctgaagagcgagctta 75
           |||| |||||||||||||| ||  |||| ||||| ||  | |||||||||| ||||||||
Sbjct: 290 tgacagagggtgaacggtccttagttgagcgtgtacggaaggagctgaagaacgagctta 349

                                                                       
Query: 76  aacaggggtacaaagaaaagctggttgatatcagggaggagatcatgcgaaagaggagag 135
           | ||||| ||||| |||||||| || ||||||||||| ||||||||||| ||| | || |
Sbjct: 350 agcagggttacaaggaaaagcttgtcgatatcagggaagagatcatgcgcaagcgcaggg 409

                                                                       
Query: 136 ctggtaaacttcctggggatactgcagctacattgaaagcctggtggcaagctcattcca 195
           |||| ||||||||||| ||||| ||| ||  | ||||||| |||||||||||||||||||
Sbjct: 410 ctgggaaacttcctggagataccgcatctgtactgaaagcttggtggcaagctcattcca 469

                                                                       
Query: 196 agtggccgtaccctactgaagacgacaaggctcgcctggtgcaggagacagggttacaac 255
           ||||||||||||| |||||||||||||||||  | ||||||||||| || ||||| || |
Sbjct: 470 agtggccgtacccaactgaagacgacaaggccaggctggtgcaggaaacggggttgcagc 529

                                                                 
Query: 256 tgaagcagatcaataattggttcatcaaccaacgcaaacggaactggcacagca 309
           | ||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct: 530 taaagcagatcaacaactggttcattaaccaacgcaaacggaactggcacagca 583

---

>gb|DQ056239.1| Zea mays knotted 1-type homeobox protein 6 (knox6) mRNA, partial
           sequence
          Length = 513

 Score =  258 bits (130), Expect = 2e-65
 Identities = 235/270 (87%)
 Strand = Plus / Plus

                                                                       
Query: 40  ttgaacgtgttcgacatgagctgaagagcgagcttaaacaggggtacaaagaaaagctgg 99
           |||| ||||| || || ||||| |||| ||||||||| ||||| |||||||||||||| |
Sbjct: 14  ttgagcgtgtacggcaggagctaaagaacgagcttaagcagggttacaaagaaaagcttg 73

                                                                       
Query: 100 ttgatatcagggaggagatcatgcgaaagaggagagctggtaaacttcctggggatactg 159
           ||||||||||||| ||||| ||||| ||| | |||||||| ||||||||||| |||||||
Sbjct: 74  ttgatatcagggaagagattatgcgcaagcgcagagctgggaaacttcctggagatactg 133

                                                                       
Query: 160 cagctacattgaaagcctggtggcaagctcattccaagtggccgtaccctactgaagacg 219
           || ||    ||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 134 catctgtgctgaaagcttggtggcaagctcattccaagtggccatacccaactgaagacg 193

                                                                       
Query: 220 acaaggctcgcctggtgcaggagacagggttacaactgaagcagatcaataattggttca 279
           ||||||| || ||||||||||| || || || || || |||||||| || || |||||||
Sbjct: 194 acaaggcacgactggtgcaggaaacgggattgcagctaaagcagattaacaactggttca 253

                                         
Query: 280 tcaaccaacgcaaacggaactggcacagca 309
           ||||||||||||||||||||||||||||||
Sbjct: 254 tcaaccaacgcaaacggaactggcacagca 283

---

>gb|AY105115.1| Zea mays PCO075632 mRNA sequence
          Length = 887

 Score =  232 bits (117), Expect = 1e-57
 Identities = 246/289 (85%)
 Strand = Plus / Plus

                                                                       
Query: 21  gagggtgaacggtcgttgattgaacgtgttcgacatgagctgaagagcgagcttaaacag 80
           |||||||||||||| ||  |||| ||||| ||  | |||||||||| ||||||||| |||
Sbjct: 224 gagggtgaacggtccttagttgagcgtgtacggaaggagctgaagaacgagcttaagcag 283

                                                                       
Query: 81  gggtacaaagaaaagctggttgatatcagggaggagatcatgcgaaagaggagagctggt 140
           || ||||| |||||||| || ||||||||||| ||||||||||| ||  | || ||||| 
Sbjct: 284 ggttacaaggaaaagcttgtcgatatcagggaagagatcatgcgcaaacgcagggctggg 343

                                                                       
Query: 141 aaacttcctggggatactgcagctacattgaaagcctggtggcaagctcattccaagtgg 200
           || |||||||| ||||| ||| ||  | ||||||| ||||||||||||||||||||||||
Sbjct: 344 aagcttcctggagataccgcatctgtactgaaagcttggtggcaagctcattccaagtgg 403

                                                                       
Query: 201 ccgtaccctactgaagacgacaaggctcgcctggtgcaggagacagggttacaactgaag 260
           |||||||| |||||||||||||||||  | ||||||||||| || ||||| || || |||
Sbjct: 404 ccgtacccaactgaagacgacaaggccagactggtgcaggaaacggggttgcagctaaag 463

                                                            
Query: 261 cagatcaataattggttcatcaaccaacgcaaacggaactggcacagca 309
           || ||||| || |||||||| ||||||||||| ||||||||||||||||
Sbjct: 464 caaatcaacaactggttcattaaccaacgcaagcggaactggcacagca 512

---

>dbj|AB007628.2| Oryza sativa (japonica cultivar-group) HOS59 mRNA, complete cds
          Length = 1199

 Score =  200 bits (101), Expect = 4e-48
 Identities = 206/241 (85%)
 Strand = Plus / Plus

                                                                       
Query: 69  gagcttaaacaggggtacaaagaaaagctggttgatatcagggaggagatcatgcgaaag 128
           ||||||||||||||||||| ||||||||| || || || ||||| |||||  | ||||||
Sbjct: 365 gagcttaaacaggggtacagagaaaagcttgtggacattagggaagagatactccgaaag 424

                                                                       
Query: 129 aggagagctggtaaacttcctggggatactgcagctacattgaaagcctggtggcaagct 188
            | |||||||| ||||| || || ||||| ||  |||| |||||||| |||||||| |||
Sbjct: 425 cgaagagctggaaaactcccaggagatacagcgtctactttgaaagcatggtggcaggct 484

                                                                       
Query: 189 cattccaagtggccgtaccctactgaagacgacaaggctcgcctggtgcaggagacaggg 248
           || || || ||||| ||||| ||||| || |||||||||||| |||||||||| ||||||
Sbjct: 485 cactctaaatggccatacccaactgaggaggacaaggctcgcttggtgcaggaaacaggg 544

                                                                       
Query: 249 ttacaactgaagcagatcaataattggttcatcaaccaacgcaaacggaactggcacagc 308
           || ||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 545 ttgcaactaaaacagatcaataattggtttatcaaccaacgtaaacggaactggcacagc 604

            
Query: 309 a 309
           |
Sbjct: 605 a 605

---

>dbj|AB061818.1| Oryza sativa (japonica cultivar-group) HOS59 mRNA for KNOX family
           class 2 homeodomain protein, complete cds
          Length = 1540

 Score =  200 bits (101), Expect = 4e-48
 Identities = 206/241 (85%)
 Strand = Plus / Plus

                                                                       
Query: 69  gagcttaaacaggggtacaaagaaaagctggttgatatcagggaggagatcatgcgaaag 128
           ||||||||||||||||||| ||||||||| || || || ||||| |||||  | ||||||
Sbjct: 706 gagcttaaacaggggtacagagaaaagcttgtggacattagggaagagatactccgaaag 765

                                                                       
Query: 129 aggagagctggtaaacttcctggggatactgcagctacattgaaagcctggtggcaagct 188
            | |||||||| ||||| || || ||||| ||  |||| |||||||| |||||||| |||
Sbjct: 766 cgaagagctggaaaactcccaggagatacagcgtctactttgaaagcatggtggcaggct 825

                                                                       
Query: 189 cattccaagtggccgtaccctactgaagacgacaaggctcgcctggtgcaggagacaggg 248
           || || || ||||| ||||| ||||| || |||||||||||| |||||||||| ||||||
Sbjct: 826 cactctaaatggccatacccaactgaggaggacaaggctcgcttggtgcaggaaacaggg 885

                                                                       
Query: 249 ttacaactgaagcagatcaataattggttcatcaaccaacgcaaacggaactggcacagc 308
           || ||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 886 ttgcaactaaaacagatcaataattggtttatcaaccaacgtaaacggaactggcacagc 945

            
Query: 309 a 309
           |
Sbjct: 946 a 946

---

>gb|AY104273.1| Zea mays PCO147946 mRNA sequence
          Length = 950

 Score =  170 bits (86), Expect = 3e-39
 Identities = 200/238 (84%)
 Strand = Plus / Plus

                                                                       
Query: 69  gagcttaaacaggggtacaaagaaaagctggttgatatcagggaggagatcatgcgaaag 128
           |||||||| |||||||||| ||| || || || |||||  |||| |||||  |||| |||
Sbjct: 347 gagcttaagcaggggtacagagacaaacttgtggatattcgggaagagatattgcggaag 406

                                                                       
Query: 129 aggagagctggtaaacttcctggggatactgcagctacattgaaagcctggtggcaagct 188
            | |||||||| ||||| ||||| || |||||  |||| || ||||| |||||||| |||
Sbjct: 407 cgaagagctgggaaactccctggcgacactgcttctaccttaaaagcatggtggcaggct 466

                                                                       
Query: 189 cattccaagtggccgtaccctactgaagacgacaaggctcgcctggtgcaggagacaggg 248
           ||||| |||||||||||||| || || || ||||||||||| ||||||||||| ||||||
Sbjct: 467 cattctaagtggccgtacccaaccgaggaagacaaggctcgactggtgcaggaaacaggg 526

                                                                     
Query: 249 ttacaactgaagcagatcaataattggttcatcaaccaacgcaaacggaactggcaca 306
            |||||||||||||||||||||| ||||| |||||||| || ||  ||||||||||||
Sbjct: 527 ctacaactgaagcagatcaataactggtttatcaaccagcgtaaggggaactggcaca 584

---

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  149 bits (75), Expect = 1e-32
 Identities = 122/137 (89%), Gaps = 3/137 (2%)
 Strand = Plus / Plus

                                                                           
Query: 213     gaagacgacaaggctcgcctggtgcaggagacagggttacaactgaagcagatcaataat 272
               |||||||||||||| |||||||||||||| || ||||||||||||||||| ||||| |||
Sbjct: 4628132 gaagacgacaaggcccgcctggtgcaggaaacggggttacaactgaagcaaatcaacaat 4628191

                                                                           
Query: 273     tggttcatcaaccaacgcaaacggaactggcacagcagcaacacagcttcctctagtgaa 332
               |||||||| |||||||||||||| ||||||||    |||||| |||| |||||| |||||
Sbjct: 4628192 tggttcattaaccaacgcaaacgaaactggca---tagcaacccagcatcctctggtgaa 4628248

                                
Query: 333     aaaaccaagaagaaaag 349
               || ||||||||||||||
Sbjct: 4628249 aagaccaagaagaaaag 4628265



 Score =  133 bits (67), Expect = 7e-28
 Identities = 118/135 (87%)
 Strand = Plus / Plus

                                                                           
Query: 79      aggggtacaaagaaaagctggttgatatcagggaggagatcatgcgaaagaggagagctg 138
               ||||||||||||||||||| || ||||| ||||| |||||| | || ||| |||||||||
Sbjct: 4627908 aggggtacaaagaaaagcttgtggatattagggaagagatccttcgcaagcggagagctg 4627967

                                                                           
Query: 139     gtaaacttcctggggatactgcagctacattgaaagcctggtggcaagctcattccaagt 198
               ||||||||||||| ||||||||| ||| | | ||||| ||||||||||||||||| ||||
Sbjct: 4627968 gtaaacttcctggtgatactgcatctatactaaaagcttggtggcaagctcattctaagt 4628027

                              
Query: 199     ggccgtaccctactg 213
               |||| ||||| ||||
Sbjct: 4628028 ggccatacccaactg 4628042



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                           
Query: 16      tgaccgagggtgaacggtcgttgattgaacgtgttcgacatgagctgaagagcgagctta 75
               |||||||||||||| | || ||| |||| ||||| || ||||||||||||| ||||||||
Sbjct: 4627769 tgaccgagggtgaaagatccttggttgagcgtgtacggcatgagctgaagaacgagctta 4627828

                     
Query: 76      aacagg 81
               | ||||
Sbjct: 4627829 agcagg 4627834



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                             
Query: 345     aaaagaaacgttacaggtaatgacggcgcggagcaatcgtggtaga 390
               |||||||||||||||||| |||  || || ||||||||||||||||
Sbjct: 4628359 aaaagaaacgttacaggtgatggtggtgctgagcaatcgtggtaga 4628404



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 439     atgaagagtgctgcagtata 458
               ||||||||||||||||||||
Sbjct: 2083866 atgaagagtgctgcagtata 2083885

---

>dbj|AP004066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
           BAC clone:OJ1572_F02
          Length = 93626

 Score =  149 bits (75), Expect = 1e-32
 Identities = 122/137 (89%), Gaps = 3/137 (2%)
 Strand = Plus / Plus

                                                                       
Query: 213 gaagacgacaaggctcgcctggtgcaggagacagggttacaactgaagcagatcaataat 272
           |||||||||||||| |||||||||||||| || ||||||||||||||||| ||||| |||
Sbjct: 204 gaagacgacaaggcccgcctggtgcaggaaacggggttacaactgaagcaaatcaacaat 263

                                                                       
Query: 273 tggttcatcaaccaacgcaaacggaactggcacagcagcaacacagcttcctctagtgaa 332
           |||||||| |||||||||||||| ||||||||    |||||| |||| |||||| |||||
Sbjct: 264 tggttcattaaccaacgcaaacgaaactggca---tagcaacccagcatcctctggtgaa 320

                            
Query: 333 aaaaccaagaagaaaag 349
           || ||||||||||||||
Sbjct: 321 aagaccaagaagaaaag 337



 Score =  103 bits (52), Expect = 6e-19
 Identities = 97/112 (86%)
 Strand = Plus / Plus

                                                                       
Query: 102 gatatcagggaggagatcatgcgaaagaggagagctggtaaacttcctggggatactgca 161
           ||||| ||||| |||||| | || ||| |||||||||||||||||||||| |||||||||
Sbjct: 3   gatattagggaagagatccttcgcaagcggagagctggtaaacttcctggtgatactgca 62

                                                               
Query: 162 gctacattgaaagcctggtggcaagctcattccaagtggccgtaccctactg 213
            ||| | | ||||| ||||||||||||||||| |||||||| ||||| ||||
Sbjct: 63  tctatactaaaagcttggtggcaagctcattctaagtggccatacccaactg 114



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                         
Query: 345 aaaagaaacgttacaggtaatgacggcgcggagcaatcgtggtaga 390
           |||||||||||||||||| |||  || || ||||||||||||||||
Sbjct: 431 aaaagaaacgttacaggtgatggtggtgctgagcaatcgtggtaga 476

---

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  125 bits (63), Expect = 2e-25
 Identities = 84/91 (92%)
 Strand = Plus / Minus

                                                                            
Query: 219      gacaaggctcgcctggtgcaggagacagggttacaactgaagcagatcaataattggttc 278
                |||||||||||| |||||||||| |||||||| ||||| || ||||||||||||||||| 
Sbjct: 26028604 gacaaggctcgcttggtgcaggaaacagggttgcaactaaaacagatcaataattggttt 26028545

                                               
Query: 279      atcaaccaacgcaaacggaactggcacagca 309
                ||||||||||| |||||||||||||||||||
Sbjct: 26028544 atcaaccaacgtaaacggaactggcacagca 26028514

---

>dbj|AP004008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1226_A12
          Length = 113025

 Score =  125 bits (63), Expect = 2e-25
 Identities = 84/91 (92%)
 Strand = Plus / Minus

                                                                         
Query: 219   gacaaggctcgcctggtgcaggagacagggttacaactgaagcagatcaataattggttc 278
             |||||||||||| |||||||||| |||||||| ||||| || ||||||||||||||||| 
Sbjct: 66462 gacaaggctcgcttggtgcaggaaacagggttgcaactaaaacagatcaataattggttt 66403

                                            
Query: 279   atcaaccaacgcaaacggaactggcacagca 309
             ||||||||||| |||||||||||||||||||
Sbjct: 66402 atcaaccaacgtaaacggaactggcacagca 66372

---

>dbj|AP003517.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OSJNBa0062J02
          Length = 151636

 Score =  125 bits (63), Expect = 2e-25
 Identities = 84/91 (92%)
 Strand = Plus / Minus

                                                                        
Query: 219  gacaaggctcgcctggtgcaggagacagggttacaactgaagcagatcaataattggttc 278
            |||||||||||| |||||||||| |||||||| ||||| || ||||||||||||||||| 
Sbjct: 7849 gacaaggctcgcttggtgcaggaaacagggttgcaactaaaacagatcaataattggttt 7790

                                           
Query: 279  atcaaccaacgcaaacggaactggcacagca 309
            ||||||||||| |||||||||||||||||||
Sbjct: 7789 atcaaccaacgtaaacggaactggcacagca 7759

---

>gb|AF544051.1| Hordeum vulgare knotted 7 (kn7) mRNA, complete cds
          Length = 1536

 Score =  123 bits (62), Expect = 7e-25
 Identities = 122/142 (85%)
 Strand = Plus / Plus

                                                                       
Query: 168 ttgaaagcctggtggcaagctcattccaagtggccgtaccctactgaagacgacaaggct 227
           ||||| || ||||||||||| ||  | || ||||||||||| ||||| || |||||||| 
Sbjct: 789 ttgaaggcttggtggcaagcccacgcgaaatggccgtacccaactgaggaggacaaggcg 848

                                                                       
Query: 228 cgcctggtgcaggagacagggttacaactgaagcagatcaataattggttcatcaaccaa 287
           || |||||||||||||| ||| | || |||||||||||||| || |||||||||||||| 
Sbjct: 849 cggctggtgcaggagacggggctgcagctgaagcagatcaacaactggttcatcaaccag 908

                                 
Query: 288 cgcaaacggaactggcacagca 309
           ||||| ||||||||||||||||
Sbjct: 909 cgcaagcggaactggcacagca 930



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                       
Query: 57  gagctgaagagcgagcttaaacaggggtacaaagaaaagctggttgatatcagggaggag 116
           |||||||||  |||||||||||||||||||| ||||||||| || || |||||||| |||
Sbjct: 678 gagctgaagcacgagcttaaacaggggtacagagaaaagcttgtggacatcagggaagag 737

             
Query: 117 at 118
           ||
Sbjct: 738 at 739

---

>dbj|AB004797.1| Nicotiana tabacum NTH23 mRNA, complete cds
          Length = 2286

 Score =  101 bits (51), Expect = 2e-18
 Identities = 189/235 (80%)
 Strand = Plus / Plus

                                                                        
Query: 75   aaacaggggtacaaagaaaagctggttgatatcagggaggagatcatgcgaaagaggaga 134
            |||||||| ||||| ||||| || || ||||| |||||||| ||  |||||||||| || 
Sbjct: 1417 aaacagggttacaaggaaaaacttgtggatattagggaggaaattctgcgaaagagaagg 1476

                                                                        
Query: 135  gctggtaaacttcctggggatactgcagctacattgaaagcctggtggcaagctcattcc 194
            || || ||||| ||||| |||||| |  ||   |||||||| ||||||||| | ||| ||
Sbjct: 1477 gcaggaaaactccctggcgatactacctctgtcttgaaagcgtggtggcaatcacatgcc 1536

                                                                        
Query: 195  aagtggccgtaccctactgaagacgacaaggctcgcctggtgcaggagacagggttacaa 254
            |||||||| ||||| ||||| || || || |||   ||||| || || |||||  | |||
Sbjct: 1537 aagtggccataccccactgaggaagataaagctaaactggtacaagaaacaggccttcaa 1596

                                                                   
Query: 255  ctgaagcagatcaataattggttcatcaaccaacgcaaacggaactggcacagca 309
            || |||||||| ||||||||||||||||||||| | ||| || ||||||||||||
Sbjct: 1597 ctcaagcagataaataattggttcatcaaccaaagaaaaagggactggcacagca 1651

---

>emb|Z29073.1|BNHDIBOX B.napus hd1 mRNA for homeodomain-containing protein
          Length = 1154

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 101/118 (85%)
 Strand = Plus / Plus

                                                                       
Query: 189 cattccaagtggccgtaccctactgaagacgacaaggctcgcctggtgcaggagacaggg 248
           |||| ||||||||| |||||||||||||||||||||||     ||||| |||||||||| 
Sbjct: 774 cattgcaagtggccttaccctactgaagacgacaaggcaaaattggtggaggagacagga 833

                                                                     
Query: 249 ttacaactgaagcagatcaataattggttcatcaaccaacgcaaacggaactggcaca 306
           |||||  ||||||| ||||| ||||||||||| || ||||||||  ||||||||||||
Sbjct: 834 ttacagttgaagcaaatcaacaattggttcattaatcaacgcaagaggaactggcaca 891

---

>gb|AF384375.1|AF384375 Porteresia coarctata homeobox protein mRNA, partial sequence
          Length = 445

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 66/72 (91%)
 Strand = Plus / Plus

                                                                       
Query: 232 tggtgcaggagacagggttacaactgaagcagatcaataattggttcatcaaccaacgca 291
           |||||||||| |||||||| || || || ||||||||||||||||||||||||||||| |
Sbjct: 23  tggtgcaggaaacagggttgcagctaaaccagatcaataattggttcatcaaccaacgta 82

                       
Query: 292 aacggaactggc 303
           ||||||||||||
Sbjct: 83  aacggaactggc 94

---

>dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1297_C09
          Length = 163378

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                          
Query: 79     aggggtacaaagaaaagctggttgatatcagggaggagatcatgcgaaagaggagagctg 138
              ||||||||||||||||||| || ||||| ||||| |||||| | || ||| |||||||||
Sbjct: 163287 aggggtacaaagaaaagcttgtggatattagggaagagatccttcgcaagcggagagctg 163346

                                     
Query: 139    gtaaacttcctggggatactgca 161
              ||||||||||||| |||||||||
Sbjct: 163347 gtaaacttcctggtgatactgca 163369



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                          
Query: 16     tgaccgagggtgaacggtcgttgattgaacgtgttcgacatgagctgaagagcgagctta 75
              |||||||||||||| | || ||| |||| ||||| || ||||||||||||| ||||||||
Sbjct: 163148 tgaccgagggtgaaagatccttggttgagcgtgtacggcatgagctgaagaacgagctta 163207

                    
Query: 76     aacagg 81
              | ||||
Sbjct: 163208 agcagg 163213

---

>gb|BT014214.1| Lycopersicon esculentum clone 133392F, mRNA sequence
          Length = 1351

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 118/142 (83%)
 Strand = Plus / Plus

                                                                        
Query: 168  ttgaaagcctggtggcaagctcattccaagtggccgtaccctactgaagacgacaaggct 227
            |||||||| ||||||||| | ||||| |||||||| || || ||||| || ||||| || 
Sbjct: 1132 ttgaaagcttggtggcaatcacattctaagtggccttatccaactgaggaagacaaagca 1191

                                                                        
Query: 228  cgcctggtgcaggagacagggttacaactgaagcagatcaataattggttcatcaaccaa 287
            ||  | ||||| || ||||| ||||||||||||||||| || |||||||| || ||||||
Sbjct: 1192 cgattagtgcaagaaacaggtttacaactgaagcagataaacaattggtttattaaccaa 1251

                                  
Query: 288  cgcaaacggaactggcacagca 309
             | ||| |||||||||||||||
Sbjct: 1252 aggaaaaggaactggcacagca 1273

---

>gb|AY667451.1| Selaginella kraussiana KNOTTED1-like protein (KNOX3) mRNA, complete
            cds
          Length = 1318

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 112/134 (83%)
 Strand = Plus / Plus

                                                                        
Query: 171  aaagcctggtggcaagctcattccaagtggccgtaccctactgaagacgacaaggctcgc 230
            ||||| |||||||| || |||||||| |||||||| || || || || || ||||| |||
Sbjct: 991  aaagcatggtggcatgcacattccaaatggccgtatccgacggaggatgaaaaggcacgc 1050

                                                                        
Query: 231  ctggtgcaggagacagggttacaactgaagcagatcaataattggttcatcaaccaacgc 290
            || || || ||||| |||||  | |||||||||||||| || ||||||||||||||||| 
Sbjct: 1051 cttgttcaagagacggggttggagctgaagcagatcaacaactggttcatcaaccaacgg 1110

                          
Query: 291  aaacggaactggca 304
            ||||| ||||||||
Sbjct: 1111 aaacgtaactggca 1124

---

>gb|AF000142.1|LEAF000142 Lycopersicon esculentum class II knotted-like homeodomain protein
            (LeT12) mRNA, complete cds
          Length = 1820

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 118/142 (83%)
 Strand = Plus / Plus

                                                                        
Query: 168  ttgaaagcctggtggcaagctcattccaagtggccgtaccctactgaagacgacaaggct 227
            |||||||| ||||||||| | ||||| |||||||| || || ||||| || ||||| || 
Sbjct: 1195 ttgaaagcttggtggcaatcacattctaagtggccttatccaactgaggaagacaaagca 1254

                                                                        
Query: 228  cgcctggtgcaggagacagggttacaactgaagcagatcaataattggttcatcaaccaa 287
            ||  | ||||| || ||||| ||||||||||||||||| || |||||||| || ||||||
Sbjct: 1255 cgattagtgcaagaaacaggtttacaactgaagcagataaacaattggtttattaaccaa 1314

                                  
Query: 288  cgcaaacggaactggcacagca 309
             | ||| |||||||||||||||
Sbjct: 1315 aggaaaaggaactggcacagca 1336

---

>emb|Z71980.1|MDKNOX1 M.domestica mRNA for knotted1-like homeobox protein
          Length = 1886

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 114/139 (82%)
 Strand = Plus / Plus

                                                                        
Query: 171  aaagcctggtggcaagctcattccaagtggccgtaccctactgaagacgacaaggctcgc 230
            ||||| ||||||||| | |||||||| ||||| || || ||||| || ||||||||| | 
Sbjct: 1425 aaagcttggtggcaatcacattccaaatggccatatccaactgaggaagacaaggctagg 1484

                                                                        
Query: 231  ctggtgcaggagacagggttacaactgaagcagatcaataattggttcatcaaccaacgc 290
             |||| ||||| || || || ||| |||||||||| || |||||||||||||| || || 
Sbjct: 1485 ttggtacaggaaaccggtttgcaattgaagcagataaacaattggttcatcaatcagcgg 1544

                               
Query: 291  aaacggaactggcacagca 309
            ||  |||||||||||||||
Sbjct: 1545 aagaggaactggcacagca 1563

---

>ref|NM_001036861.1| Arabidopsis thaliana KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) AT5G25220
            (KNAT3) transcript variant AT5G25220.2 mRNA, complete cds
          Length = 1891

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 94/113 (83%)
 Strand = Plus / Plus

                                                                        
Query: 171  aaagcctggtggcaagctcattccaagtggccgtaccctactgaagacgacaaggctcgc 230
            ||||| ||||||||| |||||||||| ||||| ||||||||||| || || |||||  | 
Sbjct: 1212 aaagcttggtggcaatctcattccaaatggccttaccctactgaggaagataaggcgagg 1271

                                                                 
Query: 231  ctggtgcaggagacagggttacaactgaagcagatcaataattggttcatcaa 283
             ||||||| |||||||| || || || || ||||| || ||||||||||||||
Sbjct: 1272 ttggtgcaagagacaggtttgcagctaaaacagataaacaattggttcatcaa 1324

---

>ref|NM_122431.2| Arabidopsis thaliana KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3);
            transcription factor AT5G25220 (KNAT3) transcript variant
            AT5G25220.1 mRNA, complete cds
          Length = 1899

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 94/113 (83%)
 Strand = Plus / Plus

                                                                        
Query: 171  aaagcctggtggcaagctcattccaagtggccgtaccctactgaagacgacaaggctcgc 230
            ||||| ||||||||| |||||||||| ||||| ||||||||||| || || |||||  | 
Sbjct: 1212 aaagcttggtggcaatctcattccaaatggccttaccctactgaggaagataaggcgagg 1271

                                                                 
Query: 231  ctggtgcaggagacagggttacaactgaagcagatcaataattggttcatcaa 283
             ||||||| |||||||| || || || || ||||| || ||||||||||||||
Sbjct: 1272 ttggtgcaagagacaggtttgcagctaaaacagataaacaattggttcatcaa 1324

---

>gb|BT000139.1| Arabidopsis thaliana KNAT3 homeodomain protein (At5g25220) mRNA,
           complete cds
          Length = 975

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 94/113 (83%)
 Strand = Plus / Plus

                                                                       
Query: 171 aaagcctggtggcaagctcattccaagtggccgtaccctactgaagacgacaaggctcgc 230
           ||||| ||||||||| |||||||||| ||||| ||||||||||| || || |||||  | 
Sbjct: 703 aaagcttggtggcaatctcattccaaatggccttaccctactgaggaagataaggcgagg 762

                                                                
Query: 231 ctggtgcaggagacagggttacaactgaagcagatcaataattggttcatcaa 283
            ||||||| |||||||| || || || || ||||| || ||||||||||||||
Sbjct: 763 ttggtgcaagagacaggtttgcagctaaaacagataaacaattggttcatcaa 815

---

>gb|AY120762.1| Arabidopsis thaliana KNAT3 homeodomain protein (At5g25220) mRNA,
            complete cds
          Length = 1426

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 94/113 (83%)
 Strand = Plus / Plus

                                                                        
Query: 171  aaagcctggtggcaagctcattccaagtggccgtaccctactgaagacgacaaggctcgc 230
            ||||| ||||||||| |||||||||| ||||| ||||||||||| || || |||||  | 
Sbjct: 1032 aaagcttggtggcaatctcattccaaatggccttaccctactgaggaagataaggcgagg 1091

                                                                 
Query: 231  ctggtgcaggagacagggttacaactgaagcagatcaataattggttcatcaa 283
             ||||||| |||||||| || || || || ||||| || ||||||||||||||
Sbjct: 1092 ttggtgcaagagacaggtttgcagctaaaacagataaacaattggttcatcaa 1144

---

>gb|AF285148.1|AF285148 Physcomitrella patens class 2 KNOTTED1-like protein MKN1-3 (MKN1-3)
            gene, complete cds
          Length = 4325

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 64/73 (87%)
 Strand = Plus / Plus

                                                                        
Query: 237  caggagacagggttacaactgaagcagatcaataattggttcatcaaccaacgcaaacgg 296
            ||||||||||| ||  || |||||||  | |||||||||||||| ||||||||||| |||
Sbjct: 3895 caggagacaggtttggaattgaagcaagtgaataattggttcataaaccaacgcaagcgg 3954

                         
Query: 297  aactggcacagca 309
            |||||||||||||
Sbjct: 3955 aactggcacagca 3967

---

>emb|BX833728.1|CNS09ZB6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL74ZA11 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 690

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 94/113 (83%)
 Strand = Plus / Plus

                                                                       
Query: 171 aaagcctggtggcaagctcattccaagtggccgtaccctactgaagacgacaaggctcgc 230
           ||||| ||||||||| |||||||||| ||||| ||||||||||| || || |||||  | 
Sbjct: 218 aaagcttggtggcaatctcattccaaatggccttaccctactgaggaagataaggcgagg 277

                                                                
Query: 231 ctggtgcaggagacagggttacaactgaagcagatcaataattggttcatcaa 283
            ||||||| |||||||| || || || || ||||| || ||||||||||||||
Sbjct: 278 ttggtgcaagagacaggtttgcagctaaaacagataaacaattggttcatcaa 330

---

>gb|AY086091.1| Arabidopsis thaliana clone 21240 mRNA, complete sequence
          Length = 1558

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 94/113 (83%)
 Strand = Plus / Plus

                                                                        
Query: 171  aaagcctggtggcaagctcattccaagtggccgtaccctactgaagacgacaaggctcgc 230
            ||||| ||||||||| |||||||||| ||||| ||||||||||| || || |||||  | 
Sbjct: 1090 aaagcttggtggcaatctcattccaaatggccttaccctactgaggaagataaggcgagg 1149

                                                                 
Query: 231  ctggtgcaggagacagggttacaactgaagcagatcaataattggttcatcaa 283
             ||||||| |||||||| || || || || ||||| || ||||||||||||||
Sbjct: 1150 ttggtgcaagagacaggtttgcagctaaaacagataaacaattggttcatcaa 1202

---

>emb|X92392.1|ATKNAT3 A.thaliana mRNA for KNAT3 homeobox protein
          Length = 1751

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 94/113 (83%)
 Strand = Plus / Plus

                                                                        
Query: 171  aaagcctggtggcaagctcattccaagtggccgtaccctactgaagacgacaaggctcgc 230
            ||||| ||||||||| |||||||||| ||||| ||||||||||| || || |||||  | 
Sbjct: 1250 aaagcttggtggcaatctcattccaaatggccttaccctactgaggaagataaggcgagg 1309

                                                                 
Query: 231  ctggtgcaggagacagggttacaactgaagcagatcaataattggttcatcaa 283
             ||||||| |||||||| || || || || ||||| || ||||||||||||||
Sbjct: 1310 ttggtgcaagagacaggtttgcagctaaaacagataaacaattggttcatcaa 1362

---

>ref|NM_121144.3| Arabidopsis thaliana KNAT4; transcription factor AT5G11060 (KNAT4)
            mRNA, complete cds
          Length = 1810

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 89/107 (83%)
 Strand = Plus / Plus

                                                                        
Query: 177  tggtggcaagctcattccaagtggccgtaccctactgaagacgacaaggctcgcctggtg 236
            ||||||||| ||||||| |||||||| ||||||||||| || || |||||  |  |||||
Sbjct: 1266 tggtggcaatctcattctaagtggccttaccctactgaggaagataaggcgaggttggtg 1325

                                                           
Query: 237  caggagacagggttacaactgaagcagatcaataattggttcatcaa 283
            |||||||| || || || || || ||||| || ||||||||||||||
Sbjct: 1326 caggagacgggtttgcagctcaaacagataaacaattggttcatcaa 1372

---

>emb|X92393.1|ATKNAT4 A.thaliana mRNA for KNAT4 homeobox protein
          Length = 1501

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 89/107 (83%)
 Strand = Plus / Plus

                                                                        
Query: 177  tggtggcaagctcattccaagtggccgtaccctactgaagacgacaaggctcgcctggtg 236
            ||||||||| ||||||| |||||||| ||||||||||| || || |||||  |  |||||
Sbjct: 1024 tggtggcaatctcattctaagtggccttaccctactgaggaagataaggcgaggttggtg 1083

                                                           
Query: 237  caggagacagggttacaactgaagcagatcaataattggttcatcaa 283
            |||||||| || || || || || ||||| || ||||||||||||||
Sbjct: 1084 caggagacgggtttgcagctcaaacagataaacaattggttcatcaa 1130

---

>emb|BX831217.1|CNS0A1MO Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS69ZD04 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1494

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 89/107 (83%)
 Strand = Plus / Plus

                                                                        
Query: 177  tggtggcaagctcattccaagtggccgtaccctactgaagacgacaaggctcgcctggtg 236
            ||||||||| ||||||| |||||||| ||||||||||| || || |||||  |  |||||
Sbjct: 1002 tggtggcaatctcattctaagtggccttaccctactgaggaagataaggcgaggttggtg 1061

                                                           
Query: 237  caggagacagggttacaactgaagcagatcaataattggttcatcaa 283
            |||||||| || || || || || ||||| || ||||||||||||||
Sbjct: 1062 caggagacgggtttgcagctcaaacagataaacaattggttcatcaa 1108

---

>emb|BX831225.1|CNS09YM8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS6ZA09 of Adult vegetative tissue of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1671

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 89/107 (83%)
 Strand = Plus / Plus

                                                                        
Query: 177  tggtggcaagctcattccaagtggccgtaccctactgaagacgacaaggctcgcctggtg 236
            ||||||||| ||||||| |||||||| ||||||||||| || || |||||  |  |||||
Sbjct: 1133 tggtggcaatctcattctaagtggccttaccctactgaggaagataaggcgaggttggtg 1192

                                                           
Query: 237  caggagacagggttacaactgaagcagatcaataattggttcatcaa 283
            |||||||| || || || || || ||||| || ||||||||||||||
Sbjct: 1193 caggagacgggtttgcagctcaaacagataaacaattggttcatcaa 1239

---

>dbj|AK118296.1| Arabidopsis thaliana At5g11060 mRNA for putative HOMEOBOX PROTEIN
            KNOTTED-1 LIKE 4 (KNAT4), complete cds, clone:
            RAFL19-58-H14
          Length = 1813

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 89/107 (83%)
 Strand = Plus / Plus

                                                                        
Query: 177  tggtggcaagctcattccaagtggccgtaccctactgaagacgacaaggctcgcctggtg 236
            ||||||||| ||||||| |||||||| ||||||||||| || || |||||  |  |||||
Sbjct: 1266 tggtggcaatctcattctaagtggccttaccctactgaggaagataaggcgaggttggtg 1325

                                                           
Query: 237  caggagacagggttacaactgaagcagatcaataattggttcatcaa 283
            |||||||| || || || || || ||||| || ||||||||||||||
Sbjct: 1326 caggagacgggtttgcagctcaaacagataaacaattggttcatcaa 1372

---

>gb|U76409.1|LEU76409 Lycopersicon esculentum homeobox 1 protein (THox1) mRNA, partial cds
          Length = 1596

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                        
Query: 243  acagggttacaactgaagcagatcaataattggttcatcaaccaacgcaaacggaactgg 302
            ||||| ||||||||||||||||| || |||||||| || |||||| | ||| ||||||||
Sbjct: 1051 acaggtttacaactgaagcagataaacaattggtttattaaccaaaggaaaaggaactgg 1110

                   
Query: 303  cacagca 309
            |||||||
Sbjct: 1111 cacagca 1117

---

>ref|NM_104977.2| Arabidopsis thaliana KNAT7; DNA binding / transcription factor
           AT1G62990 (KNAT7) mRNA, complete cds
          Length = 1319

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 97/118 (82%)
 Strand = Plus / Plus

                                                                       
Query: 189 cattccaagtggccgtaccctactgaagacgacaaggctcgcctggtgcaggagacaggg 248
           |||| ||| ||||| |||||||| ||||| ||||||||     ||||| |||||||||| 
Sbjct: 815 cattgcaaatggccttaccctacggaagatgacaaggcaaaattggtggaggagacagga 874

                                                                     
Query: 249 ttacaactgaagcagatcaataattggttcatcaaccaacgcaaacggaactggcaca 306
           || ||  ||||||| ||||| ||||||||||| |||||||||||  |||| |||||||
Sbjct: 875 ttgcagttgaagcaaatcaacaattggttcattaaccaacgcaagaggaattggcaca 932

---

>gb|AF308451.1|AF308451 Arabidopsis thaliana homeodomain transcription factor KNAT7 (KNAT7)
           mRNA, complete cds
          Length = 1333

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 97/118 (82%)
 Strand = Plus / Plus

                                                                       
Query: 189 cattccaagtggccgtaccctactgaagacgacaaggctcgcctggtgcaggagacaggg 248
           |||| ||| ||||| |||||||| ||||| ||||||||     ||||| |||||||||| 
Sbjct: 788 cattgcaaatggccttaccctacggaagatgacaaggcaaaattggtggaggagacagga 847

                                                                     
Query: 249 ttacaactgaagcagatcaataattggttcatcaaccaacgcaaacggaactggcaca 306
           || ||  ||||||| ||||| ||||||||||| |||||||||||  |||| |||||||
Sbjct: 848 ttgcagttgaagcaaatcaacaattggttcattaaccaacgcaagaggaattggcaca 905

---

>gb|AY084398.1| Arabidopsis thaliana clone 106887 mRNA, complete sequence
          Length = 1227

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 97/118 (82%)
 Strand = Plus / Plus

                                                                       
Query: 189 cattccaagtggccgtaccctactgaagacgacaaggctcgcctggtgcaggagacaggg 248
           |||| ||||||||| |||||||| ||||| ||||||||     ||||| |||||||||| 
Sbjct: 818 cattgcaagtggccttaccctacggaagatgacaaggcaaaattggtggaggagacagga 877

                                                                     
Query: 249 ttacaactgaagcagatcaataattggttcatcaaccaacgcaaacggaactggcaca 306
           || ||  ||||||| ||||| ||||||||||| ||||| |||||  |||| |||||||
Sbjct: 878 ttgcagttgaagcaaatcaacaattggttcattaaccagcgcaagaggaattggcaca 935

---

>dbj|AK118326.1| Arabidopsis thaliana At1g62990 mRNA for putative homeodomain
           transcription factor KNAT6 (KNAT6), complete cds, clone:
           RAFL19-60-J07
          Length = 1147

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 97/118 (82%)
 Strand = Plus / Plus

                                                                       
Query: 189 cattccaagtggccgtaccctactgaagacgacaaggctcgcctggtgcaggagacaggg 248
           |||| ||| ||||| |||||||| ||||| ||||||||     ||||| |||||||||| 
Sbjct: 715 cattgcaaatggccttaccctacggaagatgacaaggcaaaattggtggaggagacagga 774

                                                                     
Query: 249 ttacaactgaagcagatcaataattggttcatcaaccaacgcaaacggaactggcaca 306
           || ||  ||||||| ||||| ||||||||||| |||||||||||  |||| |||||||
Sbjct: 775 ttgcagttgaagcaaatcaacaattggttcattaaccaacgcaagaggaattggcaca 832

---

>emb|Y13191.1|HVWL8MRNA Hordeum vulgare mRNA for hypothetical protein, partial, clone WL18
          Length = 278

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                       
Query: 57  gagctgaagagcgagcttaaacaggggtacaaagaaaagctggttgatatcagggaggag 116
           |||||||||  |||||||||||||||||||| ||||||||| || || |||||||| |||
Sbjct: 108 gagctgaagcacgagcttaaacaggggtacagagaaaagcttgtggacatcagggaagag 167

             
Query: 117 at 118
           ||
Sbjct: 168 at 169

---

>ref|XM_481348.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 546

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 111/137 (81%)
 Strand = Plus / Plus

                                                                       
Query: 171 aaagcctggtggcaagctcattccaagtggccgtaccctactgaagacgacaaggctcgc 230
           ||||| ||||||||  ||||| | |||||||| || || || || || |||||||| || 
Sbjct: 334 aaagcttggtggcagtctcatgcaaagtggccatatccaacagaggaagacaaggcacgg 393

                                                                       
Query: 231 ctggtgcaggagacagggttacaactgaagcagatcaataattggttcatcaaccaacgc 290
           || || || || |||||| |||| || ||||||||||| || ||||||||||||||| | 
Sbjct: 394 ctagtccaagaaacagggctacagctaaagcagatcaacaactggttcatcaaccaaagg 453

                            
Query: 291 aaacggaactggcacag 307
           ||| | |||||||||||
Sbjct: 454 aaaagaaactggcacag 470

---

>emb|BX831253.1|CNS09YM7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS72ZA01 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1554

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 93/113 (82%)
 Strand = Plus / Plus

                                                                        
Query: 171  aaagcctggtggcaagctcattccaagtggccgtaccctactgaagacgacaaggctcgc 230
            ||||| ||||||||| |||||||||| ||||| ||||||||||| || || |||||  | 
Sbjct: 1102 aaagcttggtggcaatctcattccaaatggccttaccctactgaggaagataaggcgagg 1161

                                                                 
Query: 231  ctggtgcaggagacagggttacaactgaagcagatcaataattggttcatcaa 283
             ||||||| |||||||| |  || || || ||||| || ||||||||||||||
Sbjct: 1162 ttggtgcaagagacaggttcgcagctaaaacagataaacaattggttcatcaa 1214

---

>emb|BX841646.1|CNS09YHV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS21ZA11 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1560

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 93/113 (82%)
 Strand = Plus / Plus

                                                                        
Query: 171  aaagcctggtggcaagctcattccaagtggccgtaccctactgaagacgacaaggctcgc 230
            ||||| ||||||||| |||||||||| ||||| ||||||||||| || || |||||  | 
Sbjct: 1143 aaagcttggtggcaatctcattccaaatggccttaccctactgaggaagataaggcgagg 1202

                                                                 
Query: 231  ctggtgcaggagacagggttacaactgaagcagatcaataattggttcatcaa 283
             ||||||| ||| |||| || || || || ||||| || ||||||||||||||
Sbjct: 1203 ttggtgcaagagtcaggtttgcagcttaaacagataaacaattggttcatcaa 1255

---

>gb|AC011000.3|F16P17 Sequence of BAC F16P17 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 98412

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                         
Query: 232   tggtgcaggagacagggttacaactgaagcagatcaataattggttcatcaaccaacgca 291
             ||||| |||||||||| || ||  ||||||| ||||| ||||||||||| ||||||||||
Sbjct: 66594 tggtggaggagacaggattgcagttgaagcaaatcaacaattggttcattaaccaacgca 66653

                            
Query: 292   aacggaactggcaca 306
             |  |||| |||||||
Sbjct: 66654 agaggaattggcaca 66668

---

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                            
Query: 243      acagggttacaactgaagcagatcaataattggttcatcaaccaacgcaaacggaactgg 302
                |||||| |||| || ||||||||||| || ||||||||||||||| | ||| | ||||||
Sbjct: 11757328 acagggctacagctaaagcagatcaacaactggttcatcaaccaaaggaaaagaaactgg 11757387

                     
Query: 303      cacag 307
                |||||
Sbjct: 11757388 cacag 11757392

---

>dbj|D49704.2| Oryza sativa (japonica cultivar-group) OSH45 gene, complete cds
          Length = 5034

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                        
Query: 243  acagggttacaactgaagcagatcaataattggttcatcaaccaacgcaaacggaactgg 302
            |||||| |||| || ||||||||||| || ||||||||||||||| | ||| | ||||||
Sbjct: 4411 acagggctacagctaaagcagatcaacaactggttcatcaaccaaaggaaaagaaactgg 4470

                 
Query: 303  cacag 307
            |||||
Sbjct: 4471 cacag 4475

---

>dbj|AP005390.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0075O18
          Length = 125411

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                         
Query: 243   acagggttacaactgaagcagatcaataattggttcatcaaccaacgcaaacggaactgg 302
             |||||| |||| || ||||||||||| || ||||||||||||||| | ||| | ||||||
Sbjct: 87028 acagggctacagctaaagcagatcaacaactggttcatcaaccaaaggaaaagaaactgg 87087

                  
Query: 303   cacag 307
             |||||
Sbjct: 87088 cacag 87092

---

>dbj|AP003918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1705_A03
          Length = 168689

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                         
Query: 243   acagggttacaactgaagcagatcaataattggttcatcaaccaacgcaaacggaactgg 302
             |||||| |||| || ||||||||||| || ||||||||||||||| | ||| | ||||||
Sbjct: 35613 acagggctacagctaaagcagatcaacaactggttcatcaaccaaaggaaaagaaactgg 35672

                  
Query: 303   cacag 307
             |||||
Sbjct: 35673 cacag 35677

---

>dbj|AK111645.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132C10, full
           insert sequence
          Length = 1125

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 95/117 (81%)
 Strand = Plus / Plus

                                                                       
Query: 171 aaagcctggtggcaagctcattccaagtggccgtaccctactgaagacgacaaggctcgc 230
           ||||| ||||||||  ||||| | |||||||| || || || || || |||||||| || 
Sbjct: 523 aaagcttggtggcagtctcatgcaaagtggccatatccaacagaggaagacaaggcacgg 582

                                                                    
Query: 231 ctggtgcaggagacagggttacaactgaagcagatcaataattggttcatcaaccaa 287
           || || || || |||||| |||| || ||||||||||| || |||||||||||||||
Sbjct: 583 ctagtccaagaaacagggctacagctaaagcagatcaacaactggttcatcaaccaa 639

---

>dbj|AB043957.1| Ceratopteris richardii mRNA for CRKNOX3, complete cds
          Length = 1933

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 94/116 (81%)
 Strand = Plus / Plus

                                                                        
Query: 171  aaagcctggtggcaagctcattccaagtggccgtaccctactgaagacgacaaggctcgc 230
            ||||| |||||||| |||||||| || ||||| || || || ||||| || ||||| || 
Sbjct: 1349 aaagcatggtggcatgctcattcaaaatggccttatccaacggaagatgaaaaggcgcga 1408

                                                                    
Query: 231  ctggtgcaggagacagggttacaactgaagcagatcaataattggttcatcaacca 286
            || || || ||||| ||  | ||| ||||||| || ||||||||||||||||||||
Sbjct: 1409 ctcgttcaagagactggacttcaattgaagcaaataaataattggttcatcaacca 1464

---

>gb|DQ317423.1| Leersia virginica KNOTTED1-like homeodomain protein mRNA, partial
           cds
          Length = 1080

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 255 ctgaagcagatcaataattggttcatcaacca 286
           ||||||||||||||||| ||||||||||||||
Sbjct: 940 ctgaagcagatcaataactggttcatcaacca 971

---

>gb|DQ317419.1| Pennisetum glaucum KNOTTED1 homeodomain protein (KN1) mRNA, partial
           cds
          Length = 963

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 255 ctgaagcagatcaataattggttcatcaacca 286
           |||||||||||||| |||||||||||||||||
Sbjct: 910 ctgaagcagatcaacaattggttcatcaacca 941

---

>gb|AF011554.1|AF011554 Oryza officinalis homeobox protein (Knotted-1) gene, partial cds
          Length = 537

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 255 ctgaagcagatcaataattggttcatcaacca 286
           ||||||||||||||||| ||||||||||||||
Sbjct: 485 ctgaagcagatcaataactggttcatcaacca 516

---

>emb|BX817936.1|CNS0ABA1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL51ZG05 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 358

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                              
Query: 256 tgaagcagatcaataattggttcatcaaccaacgcaaacggaactggcaca 306
           ||||||| ||||| ||||||||||| |||||||||||  |||| |||||||
Sbjct: 9   tgaagcaaatcaacaattggttcattaaccaacgcaagaggaattggcaca 59

---

>gb|U76410.1|LEU76410 Lycopersicon esculentum homeobox 2 protein (THox2) mRNA, complete cds
          Length = 1575

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 57/67 (85%)
 Strand = Plus / Plus

                                                                        
Query: 243  acagggttacaactgaagcagatcaataattggttcatcaaccaacgcaaacggaactgg 302
            ||||| ||||| |||||||| |||||||| ||||||||||| ||| | ||||| || |||
Sbjct: 1213 acaggattacagctgaagcaaatcaataactggttcatcaatcaaagaaaacgcaattgg 1272

                   
Query: 303  cacagca 309
            || ||||
Sbjct: 1273 catagca 1279

---

>emb|CT009553.4| M.truncatula DNA sequence from clone MTH2-115C19 on chromosome 3,
             complete sequence
          Length = 125987

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 65/78 (83%)
 Strand = Plus / Minus

                                                                         
Query: 232   tggtgcaggagacagggttacaactgaagcagatcaataattggttcatcaaccaacgca 291
             ||||||| || || ||||| ||| |||| ||||||||||| ||||| ||||| ||| | |
Sbjct: 83157 tggtgcaagaaaccgggttgcaattgaaacagatcaataactggtttatcaatcaaagga 83098

                               
Query: 292   aacggaactggcacagca 309
             |  |||||||||||||||
Sbjct: 83097 agaggaactggcacagca 83080

---

>ref|XM_462847.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 906

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 258 aagcagatcaataattggttcatcaacca 286
           ||||||||||| |||||||||||||||||
Sbjct: 763 aagcagatcaacaattggttcatcaacca 791

---

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 258      aagcagatcaataattggttcatcaacca 286
                ||||||||||| |||||||||||||||||
Sbjct: 11171968 aagcagatcaacaattggttcatcaacca 11171996

---

>gb|AF288769.1|AF288769 Physcomitrella patens homeobox protein (MKN4A) gene, partial cds
          Length = 480

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 256 tgaagcagatcaataattggttcatcaaccaacgcaa 292
           ||||||| ||||| || ||||||||||||||||||||
Sbjct: 437 tgaagcaaatcaacaactggttcatcaaccaacgcaa 473

---

>gb|AF288767.1|AF288767 Physcomitrella patens homeobox protein (MKN2A) gene, partial cds
          Length = 406

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 256 tgaagcagatcaataattggttcatcaaccaacgcaa 292
           ||||||| ||||| || ||||||||||||||||||||
Sbjct: 363 tgaagcaaatcaacaactggttcatcaaccaacgcaa 399

---

>dbj|AP003206.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1146F03
          Length = 137047

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 258   aagcagatcaataattggttcatcaacca 286
             ||||||||||| |||||||||||||||||
Sbjct: 63761 aagcagatcaacaattggttcatcaacca 63789

---

>dbj|AP002881.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0035H10
          Length = 109475

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 258   aagcagatcaataattggttcatcaacca 286
             ||||||||||| |||||||||||||||||
Sbjct: 70701 aagcagatcaacaattggttcatcaacca 70729

---

>dbj|AB028883.1| Oryza sativa mRNA for knotted1-type homeobox protein OSH6, complete
           cds
          Length = 1273

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 258 aagcagatcaataattggttcatcaacca 286
           ||||||||||| |||||||||||||||||
Sbjct: 957 aagcagatcaacaattggttcatcaacca 985

---

>dbj|AB007626.1| Oryza sativa (japonica cultivar-group) HOS16 mRNA, partial cds
          Length = 667

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 258 aagcagatcaataattggttcatcaacca 286
           ||||||||||| |||||||||||||||||
Sbjct: 275 aagcagatcaacaattggttcatcaacca 303

---

>ref|XM_469600.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2604

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 255  ctgaagcagatcaataattggttcatcaacca 286
            |||||||||||||| || ||||||||||||||
Sbjct: 1986 ctgaagcagatcaacaactggttcatcaacca 2017

---

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                                
Query: 255      ctgaagcagatcaataattggttcatcaacca 286
                |||||||||||||| || ||||||||||||||
Sbjct: 29303255 ctgaagcagatcaacaactggttcatcaacca 29303224



 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 257      gaagcagatcaataattggttcatcaacca 286
                |||||||||||| || ||||||||||||||
Sbjct: 31665875 gaagcagatcaacaactggttcatcaacca 31665904



 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 257      gaagcagatcaataattggttcatcaacca 286
                |||||||||||| || ||||||||||||||
Sbjct: 26290466 gaagcagatcaacaactggttcatcaacca 26290437

---

>gb|AC145380.3| Oryza sativa chromosome 3 BAC OSJNBa0013A09 genomic sequence, complete
             sequence
          Length = 139788

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 255   ctgaagcagatcaataattggttcatcaacca 286
             |||||||||||||| || ||||||||||||||
Sbjct: 52745 ctgaagcagatcaacaactggttcatcaacca 52776

---

>gb|AY312169.1| Zea mays homeobox transcription factor KNOTTED1 (kn1) gene, complete
             cds
          Length = 22402

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 255   ctgaagcagatcaataattggttcatcaacca 286
             |||||||||||||| || ||||||||||||||
Sbjct: 11087 ctgaagcagatcaacaactggttcatcaacca 11118

---

>emb|X83518.1|HVKNOX3 H.vulgare Knox3 gene
          Length = 10815

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 255  ctgaagcagatcaataattggttcatcaacca 286
            |||||||||||||| || ||||||||||||||
Sbjct: 9805 ctgaagcagatcaacaactggttcatcaacca 9836

---

>emb|X61308.1|ZMKN1 Z.mays Knotted-1 (Kn-1) gene
          Length = 1627

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 255  ctgaagcagatcaataattggttcatcaacca 286
            |||||||||||||| || ||||||||||||||
Sbjct: 1102 ctgaagcagatcaacaactggttcatcaacca 1133

---

>gb|AY260164.1| Zea mays KNOTTED1 (kn1) gene, complete cds
          Length = 9369

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 255  ctgaagcagatcaataattggttcatcaacca 286
            |||||||||||||| || ||||||||||||||
Sbjct: 8502 ctgaagcagatcaacaactggttcatcaacca 8533

---

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                                
Query: 255      ctgaagcagatcaataattggttcatcaacca 286
                |||||||||||||| || ||||||||||||||
Sbjct: 29394677 ctgaagcagatcaacaactggttcatcaacca 29394646



 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 257      gaagcagatcaataattggttcatcaacca 286
                |||||||||||| || ||||||||||||||
Sbjct: 31756391 gaagcagatcaacaactggttcatcaacca 31756420



 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 257      gaagcagatcaataattggttcatcaacca 286
                |||||||||||| || ||||||||||||||
Sbjct: 26381775 gaagcagatcaacaactggttcatcaacca 26381746

---

>dbj|AB182945.1| Triticum aestivum Wknox1d gene for KN1 homeobox protein, complete cds
          Length = 9086

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 255  ctgaagcagatcaataattggttcatcaacca 286
            |||||||||||||| || ||||||||||||||
Sbjct: 8606 ctgaagcagatcaacaactggttcatcaacca 8637

---

>dbj|AB182944.1| Triticum aestivum Wknox1b gene for KN1 homeobox protein, complete cds
          Length = 10847

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 255   ctgaagcagatcaataattggttcatcaacca 286
             |||||||||||||| || ||||||||||||||
Sbjct: 10393 ctgaagcagatcaacaactggttcatcaacca 10424

---

>dbj|AB182943.1| Triticum aestivum Wknox1a gene for KN1 homeobox protein, complete cds
          Length = 9755

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 255  ctgaagcagatcaataattggttcatcaacca 286
            |||||||||||||| || ||||||||||||||
Sbjct: 9279 ctgaagcagatcaacaactggttcatcaacca 9310

---

>gb|DQ317421.1| Chasmanthium latifolium KNOTTED1 homeodomain protein (KN1) mRNA,
           partial cds
          Length = 1002

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 255 ctgaagcagatcaataattggttcatcaacca 286
           |||||||||||||| ||||||||||| |||||
Sbjct: 862 ctgaagcagatcaacaattggttcattaacca 893

---

>gb|DQ317420.1| Setaria italica KNOTTED1 homeodomain protein (KN1) mRNA, partial
           cds
          Length = 1032

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 255 ctgaagcagatcaataattggttcatcaacca 286
           |||||||||||||  |||||||||||||||||
Sbjct: 892 ctgaagcagatcatcaattggttcatcaacca 923

---

>gb|DQ317418.1| Panicum miliaceum KNOTTED1 homeodomain protein (KN1) mRNA, partial
           cds
          Length = 1002

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 255 ctgaagcagatcaataattggttcatcaacca 286
           |||||||||||||| || ||||||||||||||
Sbjct: 898 ctgaagcagatcaacaactggttcatcaacca 929

---

>gb|DQ317417.1| Sorghum bicolor KNOTTED1 homeodomain protein (KN1) mRNA, partial
           cds
          Length = 1044

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 255 ctgaagcagatcaataattggttcatcaacca 286
           |||||||||||||| || ||||||||||||||
Sbjct: 907 ctgaagcagatcaacaactggttcatcaacca 938

---

>gb|AF224500.1|AF224500 Triticum aestivum KNOTTED-1-like homeobox protein d (knox1d) mRNA,
            complete cds
          Length = 1531

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 255  ctgaagcagatcaataattggttcatcaacca 286
            |||||||||||||| || ||||||||||||||
Sbjct: 1026 ctgaagcagatcaacaactggttcatcaacca 1057

---

>gb|AF224499.1|AF224499 Triticum aestivum KNOTTED-1-like homeobox protein b (knox1b) mRNA,
            complete cds
          Length = 1499

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 255  ctgaagcagatcaataattggttcatcaacca 286
            |||||||||||||| || ||||||||||||||
Sbjct: 1026 ctgaagcagatcaacaactggttcatcaacca 1057

---

>gb|AF224498.1|AF224498 Triticum aestivum KNOTTED-1-like homeobox protein a (knox1a) mRNA,
            complete cds
          Length = 1520

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 255  ctgaagcagatcaataattggttcatcaacca 286
            |||||||||||||| || ||||||||||||||
Sbjct: 1023 ctgaagcagatcaacaactggttcatcaacca 1054

---

>dbj|AK107637.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-131-E10, full
           insert sequence
          Length = 1378

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 255 ctgaagcagatcaataattggttcatcaacca 286
           |||||||||||||| || ||||||||||||||
Sbjct: 850 ctgaagcagatcaacaactggttcatcaacca 881

---

>gb|AY107752.1| Zea mays PCO065671 mRNA sequence
          Length = 1662

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 255  ctgaagcagatcaataattggttcatcaacca 286
            |||||||||||||| || ||||||||||||||
Sbjct: 1124 ctgaagcagatcaacaactggttcatcaacca 1155

---

>gb|AF003599.1|AF003599 Oryza sativa homeobox protein gene, partial cds
          Length = 75

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 255 ctgaagcagatcaataattggttcatcaacca 286
           |||||||||||||| || ||||||||||||||
Sbjct: 43  ctgaagcagatcaacaactggttcatcaacca 74

---

>gb|AF022390.1|AF022390 Hordeum vulgare knotted class 1 homeodomain protein (k) mRNA,
            complete cds
          Length = 1503

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 255  ctgaagcagatcaataattggttcatcaacca 286
            |||||||||||||| || ||||||||||||||
Sbjct: 1029 ctgaagcagatcaacaactggttcatcaacca 1060

---

>dbj|D16507.1|RICOSH1 Oryza sativa (japonica cultivar-group) OSH1 gene for homeobox protein
          Length = 2598

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 255  ctgaagcagatcaataattggttcatcaacca 286
            |||||||||||||| || ||||||||||||||
Sbjct: 1986 ctgaagcagatcaacaactggttcatcaacca 2017

---

>ref|NM_119356.3| Arabidopsis thaliana KNAT5 (ARABIDOPSIS THALIANA HOMEOBOX 1 GENE);
            transcription factor AT4G32040 (KNAT5) mRNA, complete cds
          Length = 1561

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 256  tgaagcagatcaataattggttcatcaacca 286
            |||| |||||||| |||||||||||||||||
Sbjct: 1102 tgaaacagatcaacaattggttcatcaacca 1132

---

>gb|AC133865.2| Homo sapiens chromosome 1 clone RP11-93N20, complete sequence
          Length = 78250

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 78    caggggtacaaagaaaagctggt 100
             |||||||||||||||||||||||
Sbjct: 12531 caggggtacaaagaaaagctggt 12553

---

>gb|AE014823.1| Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete
              sequence
          Length = 249943

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 331    aaaaaaccaagaagaaaagaaac 353
              |||||||||||||||||||||||
Sbjct: 165619 aaaaaaccaagaagaaaagaaac 165641

---

>emb|AL021636.3|ATF10N7 Arabidopsis thaliana DNA chromosome 4, BAC clone  F10N7 (ESSA project)
          Length = 96585

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 256   tgaagcagatcaataattggttcatcaacca 286
             |||| |||||||| |||||||||||||||||
Sbjct: 43437 tgaaacagatcaacaattggttcatcaacca 43407

---

>gb|AF306661.1|AF306661 Arabidopsis thaliana homeodomain transcription factor KNAT5 (KNAT5)
            mRNA, complete cds
          Length = 1509

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 256  tgaagcagatcaataattggttcatcaacca 286
            |||| |||||||| |||||||||||||||||
Sbjct: 1058 tgaaacagatcaacaattggttcatcaacca 1088

---

>emb|BX826856.1|CNS0A3CU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB6ZB12 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1505

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 256  tgaagcagatcaataattggttcatcaacca 286
            |||| |||||||| |||||||||||||||||
Sbjct: 1095 tgaaacagatcaacaattggttcatcaacca 1125

---

>gb|AC068669.21| Homo sapiens chromosome 17, clone RP11-749I16, complete sequence
          Length = 194780

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 467   ccctctctcctctttctctctgg 489
             |||||||||||||||||||||||
Sbjct: 69383 ccctctctcctctttctctctgg 69405

---

>emb|X92394.1|ATKNAT5 A.thaliana mRNA for KNAT5 homeobox protein
          Length = 634

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 256 tgaagcagatcaataattggttcatcaacca 286
           |||| |||||||| |||||||||||||||||
Sbjct: 203 tgaaacagatcaacaattggttcatcaacca 233

---

>emb|AL161580.2|ATCHRIV76 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 76
          Length = 165698

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 256   tgaagcagatcaataattggttcatcaacca 286
             |||| |||||||| |||||||||||||||||
Sbjct: 70516 tgaaacagatcaacaattggttcatcaacca 70546

---

>dbj|D43962.1| Arabidopsis thaliana mRNA for homeodomein containing protein 1,
            complete cds
          Length = 1535

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 256  tgaagcagatcaataattggttcatcaacca 286
            |||| |||||||| |||||||||||||||||
Sbjct: 1084 tgaaacagatcaacaattggttcatcaacca 1114

---

>ref|XM_528702.1| PREDICTED: Pan troglodytes similar to RPGR-interacting protein 1
            (LOC473331), mRNA
          Length = 3444

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 332  aaaaaccaagaagaaaagaaac 353
            ||||||||||||||||||||||
Sbjct: 1645 aaaaaccaagaagaaaagaaac 1666

---

>gb|AY781901.1| Saccharum hybrid cultivar isolate c53a homeobox protein mRNA,
           complete cds
          Length = 1339

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 258 aagcagatcaataattggttcatcaa 283
           ||||||||||| ||||||||||||||
Sbjct: 868 aagcagatcaacaattggttcatcaa 893

---

>ref|XM_469241.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1014

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 798 gaagcagatcaacaactggttcatcaacca 827

---

>ref|XM_476506.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1068

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 906 gaagcagatcaacaactggttcatcaacca 935

---

>gb|AC130598.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0056I11,
              complete sequence
          Length = 145796

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 257    gaagcagatcaataattggttcatcaacca 286
              |||||||||||| || ||||||||||||||
Sbjct: 116771 gaagcagatcaacaactggttcatcaacca 116742

---

>gb|AF457125.1|AF457124S2 Zea mays knotted1-like homeodomain protein liguleless3 (lg3) gene,
           exons 4, 5 and partial cds
          Length = 869

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 392 gaagcagatcaacaactggttcatcaacca 421

---

>gb|AF457123.1|AF457122S2 Zea mays knotted1-like homeodomain protein liguleless4b (lg4b)
           gene, exons 4, 5 and partial cds
          Length = 626

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 397 gaagcagatcaacaactggttcatcaacca 426

---

>gb|AF457121.1|AF457120S2 Zea mays knotted1-like homeodomain protein liguleless4a (lg4a)
           gene, exons 4, 5, and partial cds
          Length = 639

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 395 gaagcagatcaacaactggttcatcaacca 424

---

>gb|AC133450.6| Oryza sativa chromosome 3 BAC OSJNBa0072F13 genomic sequence, complete
             sequence
          Length = 150743

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 257   gaagcagatcaataattggttcatcaacca 286
             |||||||||||| || ||||||||||||||
Sbjct: 14792 gaagcagatcaacaactggttcatcaacca 14763

---

>gb|AC159197.3| Mus musculus BAC clone RP23-421P10 from chromosome 12, complete
             sequence
          Length = 188400

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 466   cccctctctcctctttctctct 487
             ||||||||||||||||||||||
Sbjct: 46030 cccctctctcctctttctctct 46009

---

>gb|AC090683.7| Oryza sativa chromosome 3 BAC OSJNBa0035I24 genomic sequence, complete
              sequence
          Length = 134728

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 257    gaagcagatcaataattggttcatcaacca 286
              |||||||||||| || ||||||||||||||
Sbjct: 100174 gaagcagatcaacaactggttcatcaacca 100203

---

>gb|AF544047.1| Hordeum vulgare knotted 4 (kn4) gene, partial cds
          Length = 842

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 467 gaagcagatcaacaactggttcatcaacca 496

---

>gb|BC039089.1| Homo sapiens retinitis pigmentosa GTPase regulator interacting
           protein 1, mRNA (cDNA clone IMAGE:5167577), complete cds
          Length = 2014

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 332 aaaaaccaagaagaaaagaaac 353
           ||||||||||||||||||||||
Sbjct: 471 aaaaaccaagaagaaaagaaac 492

---

>gb|AC149474.15| Medicago truncatula clone mth2-122l24, complete sequence
          Length = 129008

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 258    aagcagatcaataattggttcatcaa 283
              |||||||| |||||||||||||||||
Sbjct: 117544 aagcagataaataattggttcatcaa 117519

---

>gb|AY312168.1| Zea mays homeobox transcription factor GNARLY1 (gn1) gene, complete cds
          Length = 17631

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 257   gaagcagatcaataattggttcatcaacca 286
             |||||||||||| || ||||||||||||||
Sbjct: 12274 gaagcagatcaacaactggttcatcaacca 12303

---

>emb|AL365436.26| Human DNA sequence from clone RP11-74C1 on chromosome 1 Contains the
             CGN gene for cingulin, the TUFT1 gene for tuftelin 1, a
             ribosomal protein S10 (RPS10) pseudogene and two CpG
             isalnds, complete sequence
          Length = 91830

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 464   tacccctctctcctctttctct 485
             ||||||||||||||||||||||
Sbjct: 34394 tacccctctctcctctttctct 34415

---

>gb|AY601274.1| Chelidonium majus shoot meristemless-like protein (STM) mRNA,
           partial cds
          Length = 480

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 258 aagcagatcaataattggttcatcaaccaa 287
           |||||||| ||||| |||||||||||||||
Sbjct: 429 aagcagataaataactggttcatcaaccaa 458

---

>gb|AC114971.2| Homo sapiens chromosome 5 clone RP11-3H15, complete sequence
          Length = 146463

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 467   ccctctctcctctttctctctg 488
             ||||||||||||||||||||||
Sbjct: 63268 ccctctctcctctttctctctg 63289

---

>dbj|AB071664.1| Oryza sativa (indica cultivar-group) mRNA for transcription factor
           OSH3, complete cds, cultivar:IR24
          Length = 1098

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 879 gaagcagatcaacaactggttcatcaacca 908

---

>gb|AF457119.1| Zea mays knotted1-like homeodomain protein liguleless4b (lg4b) mRNA,
            complete cds
          Length = 1447

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 257  gaagcagatcaataattggttcatcaacca 286
            |||||||||||| || ||||||||||||||
Sbjct: 1218 gaagcagatcaacaactggttcatcaacca 1247

---

>gb|AF457118.1| Zea mays knotted1-like homeodomain protein liguleless4a (lg4a)
           mRNA, complete cds
          Length = 1094

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 850 gaagcagatcaacaactggttcatcaacca 879

---

>ref|NM_020366.2| Homo sapiens retinitis pigmentosa GTPase regulator interacting
            protein 1 (RPGRIP1), mRNA
          Length = 3861

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 332  aaaaaccaagaagaaaagaaac 353
            ||||||||||||||||||||||
Sbjct: 1480 aaaaaccaagaagaaaagaaac 1501

---

>gb|AC116369.5| Oryza sativa chromosome 3 BAC OSJNBb0113I20 genomic sequence, complete
              sequence
          Length = 122939

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 257    gaagcagatcaataattggttcatcaacca 286
              |||||||||||| || ||||||||||||||
Sbjct: 119925 gaagcagatcaacaactggttcatcaacca 119896

---

>gb|DQ056237.1| Zea mays clone cp15 knotted 1-type homeobox protein 8 (knox8) mRNA,
           partial cds
          Length = 538

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 228 gaagcagatcaacaactggttcatcaacca 257

---

>gb|DQ056234.1| Zea mays knotted 1-type homeobox protein 4 (knox4) gene, partial
           cds
          Length = 580

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 322 gaagcagatcaacaactggttcatcaacca 351

---

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 201      ccgtaccctactgaagacgacaaggc 226
                |||||||||||||| |||||||||||
Sbjct: 13442889 ccgtaccctactgaggacgacaaggc 13442864

---

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 257     gaagcagatcaataattggttcatcaacca 286
               |||||||||||| || ||||||||||||||
Sbjct: 1603806 gaagcagatcaacaactggttcatcaacca 1603835

---

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 257     gaagcagatcaataattggttcatcaacca 286
               |||||||||||| || ||||||||||||||
Sbjct: 1664611 gaagcagatcaacaactggttcatcaacca 1664582

---

>dbj|AB071499.1| Oryza sativa (japonica cultivar-group) gene for transcription
           factor OSH3, javanica cultivar-group cultivar: 221
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071497.1| Oryza sativa (japonica cultivar-group) gene for transcription
           factor OSH3, javanica cultivar-group cultivar: 306
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071489.1| Oryza sativa (japonica cultivar-group) gene for transcription
           factor OSH3, javanica cultivar-group cultivar: 718
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071470.1| Oryza sativa (japonica cultivar-group) gene for transcription
           factor OSH3, javanica cultivar-group cultivar: 624
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071468.1| Oryza sativa (japonica cultivar-group) gene for transcription
           factor OSH3, javanica cultivar-group cultivar: P9
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071467.1| Oryza sativa (japonica cultivar-group) gene for transcription
           factor OSH3, javanica cultivar-group cultivar: 220
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071466.1| Oryza sativa (japonica cultivar-group) gene for transcription
           factor OSH3, javanica cultivar-group cultivar: 206
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071465.1| Oryza sativa (japonica cultivar-group) gene for transcription
           factor OSH3, javanica cultivar-group cultivar: 201
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071464.1| Oryza sativa (japonica cultivar-group) gene for transcription
           factor OSH3, javanica cultivar-group cultivar: Bm5
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071463.1| Oryza sativa (japonica cultivar-group) gene for transcription
           factor OSH3, javanica cultivar-group cultivar: M24
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071457.1| Oryza sativa (japonica cultivar-group) gene for transcription
           factor OSH3, javanica cultivar-group cultivar: 644
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071456.1| Oryza sativa (japonica cultivar-group) gene for transcription
           factor OSH3, javanica cultivar-group cultivar: 325
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071455.1| Oryza sativa (japonica cultivar-group) gene for transcription
           factor OSH3, javanica cultivar-group cultivar: Is108
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071454.1| Oryza sativa (japonica cultivar-group) gene for transcription
           factor OSH3, javanica cultivar-group cultivar: Is6
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071452.1| Oryza sativa (japonica cultivar-group) gene for transcription
           factor OSH3, javanica cultivar-group cultivar: 701
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>gb|AF260257.1|AF260257 Homo sapiens RPGR-interacting protein mRNA, complete cds
          Length = 2894

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 332 aaaaaccaagaagaaaagaaac 353
           ||||||||||||||||||||||
Sbjct: 432 aaaaaccaagaagaaaagaaac 453

---

>dbj|AP006172.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0088O14
          Length = 179483

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 257   gaagcagatcaataattggttcatcaacca 286
             |||||||||||| || ||||||||||||||
Sbjct: 72461 gaagcagatcaacaactggttcatcaacca 72490

---

>dbj|AP006562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1175F05
          Length = 126842

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 201   ccgtaccctactgaagacgacaaggc 226
             |||||||||||||| |||||||||||
Sbjct: 17817 ccgtaccctactgaggacgacaaggc 17792

---

>dbj|AP005861.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0025E03
          Length = 156806

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 201    ccgtaccctactgaagacgacaaggc 226
              |||||||||||||| |||||||||||
Sbjct: 114233 ccgtaccctactgaggacgacaaggc 114208

---

>dbj|AK111878.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046I12, full
            insert sequence
          Length = 1785

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 257  gaagcagatcaataattggttcatcaacca 286
            |||||||||||| || ||||||||||||||
Sbjct: 1289 gaagcagatcaacaactggttcatcaacca 1318

---

>dbj|AK111877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044D23, full
            insert sequence
          Length = 1467

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 257  gaagcagatcaataattggttcatcaacca 286
            |||||||||||| || ||||||||||||||
Sbjct: 1036 gaagcagatcaacaactggttcatcaacca 1065

---

>gb|AF003527.1|AF003527 Avena vaviloviana knotted-1 homeobox protein gene, partial cds
          Length = 285

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 235 gaagcagatcaacaactggttcatcaacca 264

---

>dbj|AK107296.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-C04, full
           insert sequence
          Length = 1407

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 944 gaagcagatcaacaactggttcatcaacca 973

---

>gb|AY107753.1| Zea mays PCO112760 mRNA sequence
          Length = 1453

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 257  gaagcagatcaataattggttcatcaacca 286
            |||||||||||| || ||||||||||||||
Sbjct: 1000 gaagcagatcaacaactggttcatcaacca 1029

---

>gb|AY106531.1| Zea mays PCO074163 mRNA sequence
          Length = 1547

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 257  gaagcagatcaataattggttcatcaacca 286
            |||||||||||| || ||||||||||||||
Sbjct: 1054 gaagcagatcaacaactggttcatcaacca 1083

---

>gb|AY106441.1| Zea mays PCO135030 mRNA sequence
          Length = 1517

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 257  gaagcagatcaataattggttcatcaacca 286
            |||||||||||| || ||||||||||||||
Sbjct: 1068 gaagcagatcaacaactggttcatcaacca 1097

---

>gb|AF100455.1|AF100455 Zea mays knotted class 1 homeodomain protein liguleless3 (lg3) mRNA,
            complete cds
          Length = 1537

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 257  gaagcagatcaataattggttcatcaacca 286
            |||||||||||| || ||||||||||||||
Sbjct: 1060 gaagcagatcaacaactggttcatcaacca 1089

---

>emb|AL135744.4|CNS01DVC Human chromosome 14 DNA sequence BAC R-524O1 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 195766

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 332    aaaaaccaagaagaaaagaaac 353
              ||||||||||||||||||||||
Sbjct: 122211 aaaaaccaagaagaaaagaaac 122232

---

>gb|AF050181.1|AF050181 Oryza sativa strain Indica IR58 KNOX class homeodomain protein
            (Oskn3) mRNA, complete cds
          Length = 1357

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 257  gaagcagatcaataattggttcatcaacca 286
            |||||||||||| || ||||||||||||||
Sbjct: 1026 gaagcagatcaacaactggttcatcaacca 1055

---

>gb|AF050180.1|AF050180 Oryza sativa strain Indica IR58 KNOX class homeodomain protein
            (Oskn2) mRNA, complete cds
          Length = 1521

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 257  gaagcagatcaataattggttcatcaacca 286
            |||||||||||| || ||||||||||||||
Sbjct: 1104 gaagcagatcaacaactggttcatcaacca 1133

---

>emb|AJ417058.1|HSA417058 Homo sapiens partial RPGRIP1 gene for RPGR-interacting protein 1,
           exons 12-13
          Length = 1260

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 332 aaaaaccaagaagaaaagaaac 353
           ||||||||||||||||||||||
Sbjct: 230 aaaaaccaagaagaaaagaaac 251

---

>dbj|AP004301.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0483E09
          Length = 69300

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 257   gaagcagatcaataattggttcatcaacca 286
             |||||||||||| || ||||||||||||||
Sbjct: 12959 gaagcagatcaacaactggttcatcaacca 12988

---

>gb|AF003601.1|AF003601 Oryza sativa homeobox protein gene, partial cds
          Length = 254

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 217 gaagcagatcaacaactggttcatcaacca 246

---

>gb|AF011552.1|AF011552 Hordeum marinum homeobox protein (Knotted-1) gene, partial cds
          Length = 293

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 243 gaagcagatcaacaactggttcatcaacca 272

---

>dbj|AP004939.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT17M09, TM0105,
             complete sequence
          Length = 127990

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 466   cccctctctcctctttctctct 487
             ||||||||||||||||||||||
Sbjct: 72470 cccctctctcctctttctctct 72491

---

>gb|L44133.1|MZERS1R Zea mays RS1 mRNA, complete cds
          Length = 1636

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 257  gaagcagatcaataattggttcatcaacca 286
            |||||||||||| || ||||||||||||||
Sbjct: 1140 gaagcagatcaacaactggttcatcaacca 1169

---

>emb|AJ417067.1|HSA417067 Homo sapiens mRNA for RPGR-interacting protein 1 (RPGRIP1 gene)
          Length = 3861

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 332  aaaaaccaagaagaaaagaaac 353
            ||||||||||||||||||||||
Sbjct: 1480 aaaaaccaagaagaaaagaaac 1501

---

>dbj|AB016071.1| Oryza sativa (japonica cultivar-group) mRNA, complete cds
          Length = 1531

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 257  gaagcagatcaataattggttcatcaacca 286
            |||||||||||| || ||||||||||||||
Sbjct: 999  gaagcagatcaacaactggttcatcaacca 1028

---

>dbj|AB071513.1| Oryza meridionalis gene for transcription factor OSH3, partial cds,
           cultivar:W1629
          Length = 408

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071512.1| Oryza longistaminata gene for transcription factor OSH3, partial
           cds, cultivar:W1649
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071511.1| Oryza meridionalis gene for transcription factor OSH3, partial cds,
           cultivar:W1631
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071510.1| Oryza longistaminata gene for transcription factor OSH3, partial
           cds, cultivar:W1618
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071509.1| Oryza barthii gene for transcription factor OSH3, partial cds,
           cultivar:W1468
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071508.1| Oryza barthii gene for transcription factor OSH3, partial cds,
           cultivar:W1416
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071507.1| Oryza glumaepatula gene for transcription factor OSH3, partial cds,
           cultivar:W1192
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071506.1| Oryza glumaepatula gene for transcription factor OSH3, partial cds,
           cultivar:W1187
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071505.1| Oryza glaberrima gene for transcription factor OSH3, partial cds,
           cultivar:W025
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071504.1| Oryza glaberrima gene for transcription factor OSH3, partial cds,
           cultivar:C8549
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071498.1| Oryza glaberrima gene for transcription factor OSH3, partial cds,
           cultivar:W440
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071481.1| Oryza rufipogon gene for transcription factor OSH3, partial cds,
           cultivar:W1865
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071480.1| Oryza rufipogon gene for transcription factor OSH3, partial cds,
           cultivar:W1680
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071479.1| Oryza rufipogon gene for transcription factor OSH3, partial cds,
           cultivar:W1811
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071478.1| Oryza rufipogon gene for transcription factor OSH3, partial cds,
           cultivar:W630
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071477.1| Oryza rufipogon gene for transcription factor OSH3, partial cds,
           cultivar:W629
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071476.1| Oryza rufipogon gene for transcription factor OSH3, partial cds,
           cultivar:W596
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071475.1| Oryza rufipogon gene for transcription factor OSH3, partial cds,
           cultivar:W1987
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071474.1| Oryza rufipogon gene for transcription factor OSH3, partial cds,
           cultivar:W1976
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071473.1| Oryza rufipogon gene for transcription factor OSH3, partial cds,
           cultivar:W137
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071472.1| Oryza rufipogon gene for transcription factor OSH3, partial cds,
           cultivar:W1965
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071471.1| Oryza rufipogon gene for transcription factor OSH3, partial cds,
           cultivar:W1654
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB028886.1| Oryza sativa mRNA for knotted1-type homeobox protein OSH10, partial
           cds
          Length = 231

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 201 gaagcagatcaacaactggttcatcaacca 230

---

>dbj|AB028885.1| Oryza sativa mRNA for knotted1-type homeobox protein OSH71, complete
            cds
          Length = 1576

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 257  gaagcagatcaataattggttcatcaacca 286
            |||||||||||| || ||||||||||||||
Sbjct: 1084 gaagcagatcaacaactggttcatcaacca 1113

---

>dbj|AB028884.1| Oryza sativa mRNA for knotted1-type homeobox protein OSH43, complete
            cds
          Length = 1545

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 257  gaagcagatcaataattggttcatcaacca 286
            |||||||||||| || ||||||||||||||
Sbjct: 1117 gaagcagatcaacaactggttcatcaacca 1146

---

>dbj|AB007624.1| Oryza sativa (japonica cultivar-group) HOS9 mRNA, partial cds
          Length = 1346

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 850 gaagcagatcaacaactggttcatcaacca 879

---

>dbj|AB007623.1| Oryza sativa (japonica cultivar-group) Hos3 mRNA, partial cds
          Length = 1626

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 257  gaagcagatcaataattggttcatcaacca 286
            |||||||||||| || ||||||||||||||
Sbjct: 1094 gaagcagatcaacaactggttcatcaacca 1123

---

>dbj|AB071897.1| Oryza sativa (indica cultivar-group) gene for Transcription factor
           OSH3, partial cds
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071503.1| Oryza sativa (indica cultivar-group) gene for transcription factor
           OSH3, partial cds, cultivar:Acc6622
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071502.1| Oryza sativa (indica cultivar-group) gene for transcription factor
           OSH3, partial cds, cultivar:Acc10818
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071501.1| Oryza sativa (indica cultivar-group) gene for transcription factor
           OSH3, partial cds, cultivar:868
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071500.1| Oryza sativa (indica cultivar-group) gene for transcription factor
           OSH3, partial cds, cultivar:414
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071491.1| Oryza sativa (japonica cultivar-group) gene for transcription
           factor OSH3, partial cds, cultivar:538
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071490.1| Oryza sativa (japonica cultivar-group) gene for transcription
           factor OSH3, partial cds, cultivar:1021
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071488.1| Oryza sativa (japonica cultivar-group) gene for transcription
           factor OSH3, partial cds, cultivar:709
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071487.1| Oryza sativa (indica cultivar-group) gene for transcription factor
           OSH3, partial cds, cultivar:IVT1
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071486.1| Oryza sativa (indica cultivar-group) gene for transcription factor
           OSH3, partial cds, cultivar:Kasalath
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071485.1| Oryza sativa (indica cultivar-group) gene for transcription factor
           OSH3, partial cds, cultivar:444
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071484.1| Oryza sativa (indica cultivar-group) gene for transcription factor
           OSH3, partial cds, cultivar:423
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071483.1| Oryza sativa (indica cultivar-group) gene for transcription factor
           OSH3, partial cds, cultivar:721
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071482.1| Oryza sativa (indica cultivar-group) gene for transcription factor
           OSH3, partial cds, cultivar:IR24
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071462.1| Oryza sativa (japonica cultivar-group) gene for transcription
           factor OSH3, partial cds, cultivar:K8
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071460.1| Oryza sativa (japonica cultivar-group) gene for transcription
           factor OSH3, partial cds, cultivar:532
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071458.1| Oryza sativa (japonica cultivar-group) gene for transcription
           factor OSH3, partial cds, cultivar:J67
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071453.1| Oryza sativa (japonica cultivar-group) gene for transcription
           factor OSH3, partial cds, cultivar:708
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071451.1| Oryza sativa (japonica cultivar-group) gene for transcription
           factor OSH3, partial cds, cultivar:712
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071450.1| Oryza sativa (indica cultivar-group) gene for transcription factor
           OSH3, partial cds, cultivar:C9463
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071449.1| Oryza sativa (indica cultivar-group) gene for transcription factor
           OSH3, partial cds, cultivar:C9392
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071448.1| Oryza sativa (indica cultivar-group) gene for transcription factor
           OSH3, partial cds, cultivar:C9329
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071446.1| Oryza sativa (indica cultivar-group) gene for transcription factor
           OSH3, partial cds, cultivar:230
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071445.1| Oryza sativa (indica cultivar-group) gene for transcription factor
           OSH3, partial cds, cultivar:M23
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071444.1| Oryza sativa (indica cultivar-group) gene for transcription factor
           OSH3, partial cds, cultivar:451
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071443.1| Oryza sativa (indica cultivar-group) gene for transcription factor
           OSH3, partial cds, cultivar:Is24
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071442.1| Oryza sativa (indica cultivar-group) gene for transcription factor
           OSH3, partial cds, cultivar:717
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071441.1| Oryza sativa (indica cultivar-group) gene for transcription factor
           OSH3, partial cds, cultivar:710
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071440.1| Oryza sativa (indica cultivar-group) gene for transcription factor
           OSH3, partial cds, cultivar:Km5
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>dbj|AB071439.1| Oryza sativa (indica cultivar-group) gene for transcription factor
           OSH3, partial cds, cultivar:A39
          Length = 414

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 gaagcagatcaataattggttcatcaacca 286
           |||||||||||| || ||||||||||||||
Sbjct: 213 gaagcagatcaacaactggttcatcaacca 242

---

>gb|AC160860.2| Homo sapiens chromosome 11 clone WI2-3817J24, complete sequence
          Length = 40103

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 467   ccctctctcctctttctctct 487
             |||||||||||||||||||||
Sbjct: 15233 ccctctctcctctttctctct 15253

---

>gb|AC004782.1| Homo sapiens chromosome 5, BAC clone 205e20 (LBNL H170), complete
              sequence
          Length = 184706

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 332    aaaaaccaagaagaaaagaaa 352
              |||||||||||||||||||||
Sbjct: 100484 aaaaaccaagaagaaaagaaa 100504

---

>gb|AC164635.5| Mus musculus BAC clone RP23-65G17 from chromosome 16, complete sequence
          Length = 162255

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 472   tctcctctttctctctggtgg 492
             |||||||||||||||||||||
Sbjct: 29348 tctcctctttctctctggtgg 29328

---

>gb|AF544046.1| Hordeum vulgare knotted 2 (kn2) gene, partial cds
          Length = 867

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 258 aagcagatcaataattggttcatcaacca 286
           ||||||||||| || ||||||||||||||
Sbjct: 636 aagcagatcaacaactggttcatcaacca 664

---

>gb|AC124365.5| Mus musculus BAC clone RP24-539F12 from chromosome 12, complete
             sequence
          Length = 148952

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 467   ccctctctcctctttctctct 487
             |||||||||||||||||||||
Sbjct: 50235 ccctctctcctctttctctct 50255

---

>gb|AY456694.1| Solanum tuberosum putative ethylene receptor (ERS) gene, complete cds
          Length = 8203

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 331  aaaaaaccaagaagaaaagaa 351
            |||||||||||||||||||||
Sbjct: 1463 aaaaaaccaagaagaaaagaa 1443

---

>gb|AC091001.3| Papio anubis clone RP41-36M16, complete sequence
          Length = 177066

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 467    ccctctctcctctttctctct 487
              |||||||||||||||||||||
Sbjct: 175056 ccctctctcctctttctctct 175076

---

>gb|AC122451.3| Mus musculus BAC clone RP24-252G15 from 16, complete sequence
          Length = 160256

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 472   tctcctctttctctctggtgg 492
             |||||||||||||||||||||
Sbjct: 89893 tctcctctttctctctggtgg 89873

---

>gb|AC109138.10| Mus musculus chromosome 19, clone RP23-41B18, complete sequence
          Length = 269155

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 468   cctctctcctctttctctctg 488
             |||||||||||||||||||||
Sbjct: 63556 cctctctcctctttctctctg 63536

---

>emb|AL162724.16| Human DNA sequence from clone RP11-121A14 on chromosome 9 Contains the
             5' end of the NEK6 gene for NIMA (never in mitosis gene
             a)-related kinase 6, two novel genes and a CpG island,
             complete sequence
          Length = 122542

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 332   aaaaaccaagaagaaaagaaa 352
             |||||||||||||||||||||
Sbjct: 35242 aaaaaccaagaagaaaagaaa 35222

---

>emb|AL138686.14| Human DNA sequence from clone RP11-189B4 on chromosome 13q14.11-14.3
             Contains a protein phosphatase 1 regulatory (inhibitor)
             subunit 2 (PPP1R2) (IPP2) pseudogene, an olfactory
             receptor pseudogene, the gene for a novel protein similar
             to COX17 homolog cytochrome c oxidase assembly protein
             (yeast) (COX17) and a FK506 binding protein 1A 12kDa
             (FKBP1A) pseudogene and two novel genes, complete sequence
          Length = 116524

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 76    aacaggggtacaaagaaaagctggt 100
             ||||| |||||||||||||||||||
Sbjct: 17233 aacagaggtacaaagaaaagctggt 17257

---

>gb|AY152830.1| Felis catus clone BAC 463h11 major histocompatiblity complex classical
             class II region, partial sequence
          Length = 141214

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 467   ccctctctcctctttctctct 487
             |||||||||||||||||||||
Sbjct: 63225 ccctctctcctctttctctct 63205

---

>emb|AL353032.1|ATT20N10 Arabidopsis thaliana DNA chromosome 3, BAC clone T20N10
          Length = 90273

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 333   aaaaccaagaagaaaagaaac 353
             |||||||||||||||||||||
Sbjct: 86970 aaaaccaagaagaaaagaaac 86990

---

>emb|AL163527.1|ATF17J16 Arabidopsis thaliana DNA chromosome 3, BAC clone F17J16
          Length = 89517

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 333 aaaaccaagaagaaaagaaac 353
           |||||||||||||||||||||
Sbjct: 346 aaaaccaagaagaaaagaaac 366

---

>emb|AL833523.1|HSM804836 Homo sapiens genomic DNA; cDNA DKFZp686H0737 (from clone
           DKFZp686H0737)
          Length = 3662

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 332 aaaaaccaagaagaaaagaaa 352
           |||||||||||||||||||||
Sbjct: 264 aaaaaccaagaagaaaagaaa 244

---

>gb|AC013543.16| Homo sapiens chromosome 8, clone RP11-317H6, complete sequence
          Length = 177777

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 435    tatcatgaagagtgctgcagt 455
              |||||||||||||||||||||
Sbjct: 171964 tatcatgaagagtgctgcagt 171944

---

>gb|AF060592.1|AF060592 Gossypium barbadense clone pXP059 repetitive DNA sequence
          Length = 577

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 264 atcaataattggttcatcaaccaacgcaaacggaactggca 304
           ||||| || ||||||||||||||| | ||||| ||||||||
Sbjct: 111 atcaacaactggttcatcaaccaaaggaaacgaaactggca 151

---

>gb|AC023866.8| Homo sapiens chromosome 8, clone RP11-787D18, complete sequence
          Length = 180486

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 435   tatcatgaagagtgctgcagt 455
             |||||||||||||||||||||
Sbjct: 97618 tatcatgaagagtgctgcagt 97638

---

>gb|AC012634.8| Homo sapiens chromosome 5 clone CTD-2185H17, complete sequence
          Length = 237712

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 332    aaaaaccaagaagaaaagaaa 352
              |||||||||||||||||||||
Sbjct: 182377 aaaaaccaagaagaaaagaaa 182397

---

>dbj|AK083771.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
            enriched library, clone:D130006K20
            product:unclassifiable, full insert sequence
          Length = 3152

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 472  tctcctctttctctctggtgg 492
            |||||||||||||||||||||
Sbjct: 3108 tctcctctttctctctggtgg 3128

---

>dbj|AB043956.1| Ceratopteris richardii mRNA for CRKNOX2, complete cds
          Length = 1586

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                         
Query: 258  aagcagatcaataattggttcatcaaccaacgcaaacggaactgg 302
            |||||||| ||||| ||||||||||| || || |||||| |||||
Sbjct: 1127 aagcagataaataactggttcatcaatcagcgaaaacggcactgg 1171

---

>gb|DQ317424.1| Pharus lappulaceus KNOTTED1-like homeodomain protein mRNA, partial
           cds
          Length = 1008

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 255 ctgaagcagatcaataattggttcatcaaccaa 287
           |||||||||||||| || ||||| |||||||||
Sbjct: 865 ctgaagcagatcaacaactggtttatcaaccaa 897

---

>dbj|AP007216.1| Homo sapiens genomic DNA, chromosome 11 clone:RP11-643C9, complete
             sequence
          Length = 100462

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 467   ccctctctcctctttctctct 487
             |||||||||||||||||||||
Sbjct: 47096 ccctctctcctctttctctct 47116

---

>gb|AC122362.5| Mus musculus BAC clone RP23-430N1 from chromosome 6, complete sequence
          Length = 212275

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 467   ccctctctcctctttctctct 487
             |||||||||||||||||||||
Sbjct: 27197 ccctctctcctctttctctct 27217

---

>emb|CR936328.1| Medicago truncatula chromosome 5 clone mth4-1f18, COMPLETE SEQUENCE
          Length = 194592

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 256    tgaagcagatcaataattggttcat 280
              ||||||||||||| |||||||||||
Sbjct: 152665 tgaagcagatcaacaattggttcat 152641

---

>emb|CT009697.13| Mouse DNA sequence from clone RP23-131H5 on chromosome 13, complete
             sequence
          Length = 225802

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 332   aaaaaccaagaagaaaagaaa 352
             |||||||||||||||||||||
Sbjct: 76462 aaaaaccaagaagaaaagaaa 76442

---

>gb|AC122201.4| Mus musculus BAC clone RP23-64I9 from 6, complete sequence
          Length = 239994

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 467   ccctctctcctctttctctct 487
             |||||||||||||||||||||
Sbjct: 68943 ccctctctcctctttctctct 68923

---

>emb|AL731828.22| Mouse DNA sequence from clone RP23-50L5 on chromosome X, complete
              sequence
          Length = 228327

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 466    cccctctctcctctttctctc 486
              |||||||||||||||||||||
Sbjct: 111732 cccctctctcctctttctctc 111752


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,139,444
Number of Sequences: 3902068
Number of extensions: 6139444
Number of successful extensions: 145372
Number of sequences better than 10.0: 326
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 144194
Number of HSP's gapped (non-prelim): 1173
length of query: 571
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 548
effective length of database: 17,143,297,704
effective search space: 9394527141792
effective search space used: 9394527141792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---