ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags5p09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 198 bits (100), Expect = 1e-47 Identities = 211/248 (85%) Strand = Plus / Plus Query: 71 ccatggcgatgcgtgcgctgtacaacgagatccgcgcgatgaaggtgcgcgaggtgccgg 130 |||||||| |||| || ||| || ||||||||| | |||||||||||| |||||||||| Sbjct: 4141590 ccatggcgctgcgagccctgatcagcgagatccgggggatgaaggtgcgggaggtgccgg 4141649 Query: 131 cgtacctcaagccccgcctcacctgggcgaacgtgaagaagagcaccgaccaggcggtgg 190 |||||| ||||| || || | ||||| ||||||||||||||||| ||||||||| || | Sbjct: 4141650 ggtacctgaagccgcggctgagctgggagaacgtgaagaagagcagcgaccaggccgtcg 4141709 Query: 191 accgctacatcgagaagtacatcgagaccagctcgccggagccgatcttccatatctgct 250 ||||||||||||| |||||||||||||||||||||||||||||| ||||||| || || Sbjct: 4141710 accgctacatcgacaagtacatcgagaccagctcgccggagccgctcttccacgtcatct 4141769 Query: 251 tcggcggcatggccttctcctaccttgtgggccttccccaggagcgccgccacctcgagc 310 |||| |||||||||||||||||| | ||| ||| |||||||||||||||||| | Sbjct: 4141770 acggcctcatggccttctcctacctcatcaacctccccaaggagcgccgccacctcgccc 4141829 Query: 311 acctcgag 318 |||||||| Sbjct: 4141830 acctcgag 4141837 Score = 95.6 bits (48), Expect = 2e-16 Identities = 48/48 (100%) Strand = Plus / Plus Query: 509 tatcataagcaacttcaaactggaagtgcatgcattgtgattaaaaac 556 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4143436 tatcataagcaacttcaaactggaagtgcatgcattgtgattaaaaac 4143483
>dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1077_E05 Length = 116305 Score = 198 bits (100), Expect = 1e-47 Identities = 211/248 (85%) Strand = Plus / Plus Query: 71 ccatggcgatgcgtgcgctgtacaacgagatccgcgcgatgaaggtgcgcgaggtgccgg 130 |||||||| |||| || ||| || ||||||||| | |||||||||||| |||||||||| Sbjct: 51604 ccatggcgctgcgagccctgatcagcgagatccgggggatgaaggtgcgggaggtgccgg 51663 Query: 131 cgtacctcaagccccgcctcacctgggcgaacgtgaagaagagcaccgaccaggcggtgg 190 |||||| ||||| || || | ||||| ||||||||||||||||| ||||||||| || | Sbjct: 51664 ggtacctgaagccgcggctgagctgggagaacgtgaagaagagcagcgaccaggccgtcg 51723 Query: 191 accgctacatcgagaagtacatcgagaccagctcgccggagccgatcttccatatctgct 250 ||||||||||||| |||||||||||||||||||||||||||||| ||||||| || || Sbjct: 51724 accgctacatcgacaagtacatcgagaccagctcgccggagccgctcttccacgtcatct 51783 Query: 251 tcggcggcatggccttctcctaccttgtgggccttccccaggagcgccgccacctcgagc 310 |||| |||||||||||||||||| | ||| ||| |||||||||||||||||| | Sbjct: 51784 acggcctcatggccttctcctacctcatcaacctccccaaggagcgccgccacctcgccc 51843 Query: 311 acctcgag 318 |||||||| Sbjct: 51844 acctcgag 51851 Score = 95.6 bits (48), Expect = 2e-16 Identities = 48/48 (100%) Strand = Plus / Plus Query: 509 tatcataagcaacttcaaactggaagtgcatgcattgtgattaaaaac 556 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 53450 tatcataagcaacttcaaactggaagtgcatgcattgtgattaaaaac 53497
>dbj|AK120215.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040G12, full insert sequence Length = 752 Score = 198 bits (100), Expect = 1e-47 Identities = 211/248 (85%) Strand = Plus / Plus Query: 71 ccatggcgatgcgtgcgctgtacaacgagatccgcgcgatgaaggtgcgcgaggtgccgg 130 |||||||| |||| || ||| || ||||||||| | |||||||||||| |||||||||| Sbjct: 86 ccatggcgctgcgagccctgatcagcgagatccgggggatgaaggtgcgggaggtgccgg 145 Query: 131 cgtacctcaagccccgcctcacctgggcgaacgtgaagaagagcaccgaccaggcggtgg 190 |||||| ||||| || || | ||||| ||||||||||||||||| ||||||||| || | Sbjct: 146 ggtacctgaagccgcggctgagctgggagaacgtgaagaagagcagcgaccaggccgtcg 205 Query: 191 accgctacatcgagaagtacatcgagaccagctcgccggagccgatcttccatatctgct 250 ||||||||||||| |||||||||||||||||||||||||||||| ||||||| || || Sbjct: 206 accgctacatcgacaagtacatcgagaccagctcgccggagccgctcttccacgtcatct 265 Query: 251 tcggcggcatggccttctcctaccttgtgggccttccccaggagcgccgccacctcgagc 310 |||| |||||||||||||||||| | ||| ||| |||||||||||||||||| | Sbjct: 266 acggcctcatggccttctcctacctcatcaacctccccaaggagcgccgccacctcgccc 325 Query: 311 acctcgag 318 |||||||| Sbjct: 326 acctcgag 333 Score = 95.6 bits (48), Expect = 2e-16 Identities = 48/48 (100%) Strand = Plus / Plus Query: 509 tatcataagcaacttcaaactggaagtgcatgcattgtgattaaaaac 556 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 539 tatcataagcaacttcaaactggaagtgcatgcattgtgattaaaaac 586
>dbj|AK058292.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E12, full insert sequence Length = 591 Score = 198 bits (100), Expect = 1e-47 Identities = 211/248 (85%) Strand = Plus / Plus Query: 71 ccatggcgatgcgtgcgctgtacaacgagatccgcgcgatgaaggtgcgcgaggtgccgg 130 |||||||| |||| || ||| || ||||||||| | |||||||||||| |||||||||| Sbjct: 44 ccatggcgctgcgagccctgatcagcgagatccgggggatgaaggtgcgggaggtgccgg 103 Query: 131 cgtacctcaagccccgcctcacctgggcgaacgtgaagaagagcaccgaccaggcggtgg 190 |||||| ||||| || || | ||||| ||||||||||||||||| ||||||||| || | Sbjct: 104 ggtacctgaagccgcggctgagctgggagaacgtgaagaagagcagcgaccaggccgtcg 163 Query: 191 accgctacatcgagaagtacatcgagaccagctcgccggagccgatcttccatatctgct 250 ||||||||||||| |||||||||||||||||||||||||||||| ||||||| || || Sbjct: 164 accgctacatcgacaagtacatcgagaccagctcgccggagccgctcttccacgtcatct 223 Query: 251 tcggcggcatggccttctcctaccttgtgggccttccccaggagcgccgccacctcgagc 310 |||| |||||||||||||||||| | ||| ||| |||||||||||||||||| | Sbjct: 224 acggcctcatggccttctcctacctcatcaacctccccaaggagcgccgccacctcgccc 283 Query: 311 acctcgag 318 |||||||| Sbjct: 284 acctcgag 291 Score = 87.7 bits (44), Expect = 4e-14 Identities = 47/48 (97%) Strand = Plus / Plus Query: 509 tatcataagcaacttcaaactggaagtgcatgcattgtgattaaaaac 556 |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 502 tatcataagcaacttcaagctggaagtgcatgcattgtgattaaaaac 549
>gb|AY108764.1| Zea mays PCO147772 mRNA sequence Length = 910 Score = 153 bits (77), Expect = 8e-34 Identities = 140/161 (86%) Strand = Plus / Plus Query: 70 gccatggcgatgcgtgcgctgtacaacgagatccgcgcgatgaaggtgcgcgaggtgccg 129 ||||||||| ||||||| ||||||||||||||||| |||||||| ||||| |||||| Sbjct: 248 gccatggcgctgcgtgccctgtacaacgagatccggagcatgaaggtccgcgacgtgccg 307 Query: 130 gcgtacctcaagccccgcctcacctgggcgaacgtgaagaagagcaccgaccaggcggtg 189 || ||||| ||||| ||| | ||||||| ||||| ||||||||| |||||||||| || Sbjct: 308 gcttacctgaagccgcgcttgacctgggacaacgtcaagaagagcgccgaccaggccgtc 367 Query: 190 gaccgctacatcgagaagtacatcgagaccagctcgccgga 230 |||||||||||||||||||||||||| || ||||||||||| Sbjct: 368 gaccgctacatcgagaagtacatcgacacgagctcgccgga 408 Score = 48.1 bits (24), Expect = 0.034 Identities = 24/24 (100%) Strand = Plus / Plus Query: 533 agtgcatgcattgtgattaaaaac 556 |||||||||||||||||||||||| Sbjct: 733 agtgcatgcattgtgattaaaaac 756
>gb|AY389756.1| Hyacinthus orientalis fiber protein mRNA, partial cds Length = 608 Score = 95.6 bits (48), Expect = 2e-16 Identities = 123/148 (83%) Strand = Plus / Plus Query: 166 aagaagagcaccgaccaggcggtggaccgctacatcgagaagtacatcgagaccagctcg 225 ||||||| ||||| ||||| || |||||||||||||||||||||||||| || ||||| Sbjct: 92 aagaagacgaccgatcaggccgttgaccgctacatcgagaagtacatcgatacgagctcc 151 Query: 226 ccggagccgatcttccatatctgcttcggcggcatggccttctcctaccttgtgggcctt 285 ||||| ||||||| | ||| ||||||| ||| |||||||||||| || | ||| Sbjct: 152 gtcgagcccctcttccacgtatgcatcggcgggatgatcttctcctacctcgtcgccctc 211 Query: 286 ccccaggagcgccgccacctcgagcacc 313 ||||| |||||||||||||||||||||| Sbjct: 212 ccccatgagcgccgccacctcgagcacc 239
>dbj|AP004517.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT14B06, TM0045, complete sequence Length = 113139 Score = 71.9 bits (36), Expect = 2e-09 Identities = 93/112 (83%) Strand = Plus / Minus Query: 201 cgagaagtacatcgagaccagctcgccggagccgatcttccatatctgcttcggcggcat 260 ||||||||||||||| ||||| || || ||||| |||||||| |||||| |||||||| Sbjct: 13572 cgagaagtacatcgaaaccagttcccctgagcctctcttccatgtctgctatggcggcat 13513 Query: 261 ggccttctcctaccttgtgggccttccccaggagcgccgccacctcgagcac 312 | ||||||||||||||| || || ||||||||||||| ||||||||| Sbjct: 13512 gatcttctcctaccttgttaatctccctaaggagcgccgccatctcgagcac 13461
>gb|BT017226.1| Zea mays clone EL01N0302D08.c mRNA sequence Length = 313 Score = 48.1 bits (24), Expect = 0.034 Identities = 24/24 (100%) Strand = Plus / Minus Query: 533 agtgcatgcattgtgattaaaaac 556 |||||||||||||||||||||||| Sbjct: 78 agtgcatgcattgtgattaaaaac 55
>ref|NM_119147.2| Arabidopsis thaliana unknown protein AT4G30010 mRNA, complete cds Length = 349 Score = 44.1 bits (22), Expect = 0.52 Identities = 34/38 (89%) Strand = Plus / Plus Query: 241 catatctgcttcggcggcatggccttctcctaccttgt 278 |||||||||||| ||||||||| ||||| |||||||| Sbjct: 245 catatctgcttctacggcatggctttctcttaccttgt 282
>emb|AL161576.2|ATCHRIV72 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 72 Length = 198924 Score = 44.1 bits (22), Expect = 0.52 Identities = 34/38 (89%) Strand = Plus / Plus Query: 241 catatctgcttcggcggcatggccttctcctaccttgt 278 |||||||||||| ||||||||| ||||| |||||||| Sbjct: 12766 catatctgcttctacggcatggctttctcttaccttgt 12803
>emb|AL050352.1|ATF27B13 Arabidopsis thaliana DNA chromosome 4, BAC clone F27B13 (ESSA project) Length = 98401 Score = 44.1 bits (22), Expect = 0.52 Identities = 34/38 (89%) Strand = Plus / Plus Query: 241 catatctgcttcggcggcatggccttctcctaccttgt 278 |||||||||||| ||||||||| ||||| |||||||| Sbjct: 97693 catatctgcttctacggcatggctttctcttaccttgt 97730
>emb|AL078464.1|ATF6G3 Arabidopsis thaliana DNA chromosome 4, BAC clone F6G3 (ESSA project) Length = 93953 Score = 44.1 bits (22), Expect = 0.52 Identities = 34/38 (89%) Strand = Plus / Plus Query: 241 catatctgcttcggcggcatggccttctcctaccttgt 278 |||||||||||| ||||||||| ||||| |||||||| Sbjct: 9937 catatctgcttctacggcatggctttctcttaccttgt 9974
>gb|AY054143.1| Arabidopsis thaliana AT4g30010/F6G3_40 mRNA, complete cds Length = 273 Score = 44.1 bits (22), Expect = 0.52 Identities = 34/38 (89%) Strand = Plus / Plus Query: 241 catatctgcttcggcggcatggccttctcctaccttgt 278 |||||||||||| ||||||||| ||||| |||||||| Sbjct: 169 catatctgcttctacggcatggctttctcttaccttgt 206
>gb|AF380650.1|AF380650 Arabidopsis thaliana AT4g30010/F6G3_40 mRNA, complete cds Length = 594 Score = 44.1 bits (22), Expect = 0.52 Identities = 34/38 (89%) Strand = Plus / Plus Query: 241 catatctgcttcggcggcatggccttctcctaccttgt 278 |||||||||||| ||||||||| ||||| |||||||| Sbjct: 254 catatctgcttctacggcatggctttctcttaccttgt 291
>gb|AY086876.1| Arabidopsis thaliana clone 2891 mRNA, complete sequence Length = 588 Score = 44.1 bits (22), Expect = 0.52 Identities = 34/38 (89%) Strand = Plus / Plus Query: 241 catatctgcttcggcggcatggccttctcctaccttgt 278 |||||||||||| ||||||||| ||||| |||||||| Sbjct: 284 catatctgcttctacggcatggctttctcttaccttgt 321
>emb|Z49629.1|SCYJR129C S.cerevisiae chromosome X reading frame ORF YJR129c Length = 1937 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 92 acaacgagatccgcgcgatgaa 113 |||||||||||||||||||||| Sbjct: 802 acaacgagatccgcgcgatgaa 781
>gb|DQ331370.1| Synthetic construct Saccharomyces cerevisiae clone FLH145855.01X YJR129C gene, complete sequence Length = 1020 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 92 acaacgagatccgcgcgatgaa 113 |||||||||||||||||||||| Sbjct: 938 acaacgagatccgcgcgatgaa 959
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 285 tccccaggagcgccgccacctc 306 |||||||||||||||||||||| Sbjct: 93308 tccccaggagcgccgccacctc 93329
>ref|XM_860322.1| PREDICTED: Canis familiaris similar to RNA binding motif protein 14, transcript variant 2 (LOC610639), mRNA Length = 2563 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 270 ctaccttgtgggccttccccaggag 294 ||||| ||||||||||||||||||| Sbjct: 2006 ctaccctgtgggccttccccaggag 2030
>ref|XM_847190.1| PREDICTED: Canis familiaris similar to RNA binding motif protein 14, transcript variant 1 (LOC610639), mRNA Length = 2747 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 270 ctaccttgtgggccttccccaggag 294 ||||| ||||||||||||||||||| Sbjct: 2190 ctaccctgtgggccttccccaggag 2214
>gb|BC000488.2| Homo sapiens RNA binding motif protein 14, mRNA (cDNA clone MGC:8361 IMAGE:2819856), complete cds Length = 2844 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 270 ctaccttgtgggccttccccaggag 294 ||||| ||||||||||||||||||| Sbjct: 2204 ctaccatgtgggccttccccaggag 2228
>ref|NM_006328.2| Homo sapiens RNA binding motif protein 14 (RBM14), mRNA Length = 2811 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 270 ctaccttgtgggccttccccaggag 294 ||||| ||||||||||||||||||| Sbjct: 2224 ctaccatgtgggccttccccaggag 2248
>emb|CR858440.1| Pongo pygmaeus mRNA; cDNA DKFZp469C2227 (from clone DKFZp469C2227) Length = 2788 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 270 ctaccttgtgggccttccccaggag 294 ||||| ||||||||||||||||||| Sbjct: 2221 ctaccatgtgggccttccccaggag 2245
>emb|CR749306.1| Homo sapiens mRNA; cDNA DKFZp779J0927 (from clone DKFZp779J0927) Length = 3627 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 270 ctaccttgtgggccttccccaggag 294 ||||| ||||||||||||||||||| Sbjct: 473 ctaccatgtgggccttccccaggag 497
>dbj|AK021768.1| Homo sapiens cDNA FLJ11706 fis, clone HEMBA1005101, highly similar to Homo sapiens SYT interacting protein SIP mRNA Length = 2773 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 270 ctaccttgtgggccttccccaggag 294 ||||| ||||||||||||||||||| Sbjct: 2220 ctaccatgtgggccttccccaggag 2244
>gb|BC113267.1| Bos taurus cDNA clone MGC:137891 IMAGE:8088333, complete cds Length = 1475 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 270 ctaccttgtgggccttccccaggag 294 ||||| ||||||||||||||||||| Sbjct: 847 ctaccatgtgggccttccccaggag 871
>gb|AF315633.1|AF315633 Homo sapiens coactivator modulator mRNA, complete cds, alternatively spliced Length = 976 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 270 ctaccttgtgggccttccccaggag 294 ||||| ||||||||||||||||||| Sbjct: 870 ctaccatgtgggccttccccaggag 894
>gb|AF315632.1|AF315632 Homo sapiens coactivator activator mRNA, complete cds, alternatively spliced Length = 2781 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 270 ctaccttgtgggccttccccaggag 294 ||||| ||||||||||||||||||| Sbjct: 2224 ctaccatgtgggccttccccaggag 2248
>ref|NM_001014901.1| Bos taurus RNA binding motif protein 14 (RBM14), mRNA Length = 2760 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 270 ctaccttgtgggccttccccaggag 294 ||||| ||||||||||||||||||| Sbjct: 2207 ctaccatgtgggccttccccaggag 2231
>dbj|AK222830.1| Homo sapiens mRNA for RNA binding motif protein 14 variant, clone: HEP05339 Length = 2427 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 270 ctaccttgtgggccttccccaggag 294 ||||| ||||||||||||||||||| Sbjct: 2221 ctaccatgtgggccttccccaggag 2245
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 109 atgaaggtgcgcgaggtgccg 129 ||||||||||||||||||||| Sbjct: 4223757 atgaaggtgcgcgaggtgccg 4223777
>gb|BT020733.1| Bos taurus RNA binding motif protein 14 (RBM14), mRNA, complete cds Length = 2760 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 270 ctaccttgtgggccttccccaggag 294 ||||| ||||||||||||||||||| Sbjct: 2207 ctaccatgtgggccttccccaggag 2231
>gb|AF080561.1| Homo sapiens SYT interacting protein SIP mRNA, complete cds Length = 2766 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 270 ctaccttgtgggccttccccaggag 294 ||||| ||||||||||||||||||| Sbjct: 2209 ctaccatgtgggccttccccaggag 2233
>gb|BC023619.2| Homo sapiens RNA binding motif protein 14, mRNA (cDNA clone IMAGE:4651407) Length = 2793 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 270 ctaccttgtgggccttccccaggag 294 ||||| ||||||||||||||||||| Sbjct: 2204 ctaccatgtgggccttccccaggag 2228
>dbj|AB209007.1| Homo sapiens mRNA for RNA binding motif protein 14 variant protein Length = 6303 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 270 ctaccttgtgggccttccccaggag 294 ||||| ||||||||||||||||||| Sbjct: 5750 ctaccatgtgggccttccccaggag 5774
>emb|AL672248.13| Mouse DNA sequence from clone RP23-82A12 on chromosome X, complete sequence Length = 192322 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 412 tgggctacctggagttgattttatttgat 440 |||||| |||||| ||||||||||||||| Sbjct: 157564 tgggctgcctggatttgattttatttgat 157536
>dbj|AP001157.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-658F2, complete sequence Length = 200458 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 270 ctaccttgtgggccttccccaggag 294 ||||| ||||||||||||||||||| Sbjct: 45891 ctaccatgtgggccttccccaggag 45915
>gb|DQ231579.1| Sus scrofa system B0 neutral amino acid transporter SLC6A19 mRNA, partial cds Length = 443 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 tgaagaagagcaccgaccag 183 |||||||||||||||||||| Sbjct: 392 tgaagaagagcaccgaccag 373
>gb|AC147818.2| Xenopus tropicalis clone CH216-10M9, complete sequence Length = 58071 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 28079 gcggccatggcgatgcgtgc 28060
>gb|AC112330.5| Rattus norvegicus 15 BAC CH230-185E8 (Children's Hospital Oakland Research Institute) complete sequence Length = 158526 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 537 catgcattgtgattaaaaac 556 |||||||||||||||||||| Sbjct: 30588 catgcattgtgattaaaaac 30569
>gb|AY658774.1| Synthetic construct Peudomonas aeruginosa clone FLH034408.01F PA1192 gene, partial cds Length = 825 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 gcttcggcggcatggccttc 267 |||||||||||||||||||| Sbjct: 502 gcttcggcggcatggccttc 483
>ref|XM_743947.1| Aspergillus fumigatus Af293 hypothetical protein (Afu7g04700) partial mRNA Length = 1578 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 455 gtgtcggaaagcagcaacaa 474 |||||||||||||||||||| Sbjct: 1081 gtgtcggaaagcagcaacaa 1100
>ref|XM_802276.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053511769.20) partial mRNA Length = 10281 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 6065 gcggccatggcgatgcgtgc 6084
>ref|XM_803126.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053507827.10) partial mRNA Length = 10383 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 6071 gcggccatggcgatgcgtgc 6090
>ref|XM_803395.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053511677.10) partial mRNA Length = 10377 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 6065 gcggccatggcgatgcgtgc 6084
>ref|XM_803419.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053510235.10) partial mRNA Length = 10404 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 6083 gcggccatggcgatgcgtgc 6102
>ref|XM_804961.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053510459.30) partial mRNA Length = 10458 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 6152 gcggccatggcgatgcgtgc 6171
>ref|XM_805671.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053510391.10) partial mRNA Length = 10446 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 6134 gcggccatggcgatgcgtgc 6153
>ref|XM_805743.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053503655.20) partial mRNA Length = 10395 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 6083 gcggccatggcgatgcgtgc 6102
>ref|XM_807516.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053508159.40) partial mRNA Length = 10449 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 6140 gcggccatggcgatgcgtgc 6159
>ref|XM_809365.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053506675.70) partial mRNA Length = 10344 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 6062 gcggccatggcgatgcgtgc 6081
>ref|XM_809491.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053507643.50) partial mRNA Length = 10371 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 6089 gcggccatggcgatgcgtgc 6108
>ref|XM_809717.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053511767.20) partial mRNA Length = 10395 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 6074 gcggccatggcgatgcgtgc 6093
>ref|XM_810025.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053508523.40) partial mRNA Length = 10413 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 6128 gcggccatggcgatgcgtgc 6147
>ref|XM_811956.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053510175.60) partial mRNA Length = 10395 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 6071 gcggccatggcgatgcgtgc 6090
>ref|XM_812055.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053511487.30) partial mRNA Length = 10431 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 6119 gcggccatggcgatgcgtgc 6138
>ref|XM_816339.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053508163.70) partial mRNA Length = 10443 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 6134 gcggccatggcgatgcgtgc 6153
>ref|XM_812629.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053504115.100) partial mRNA Length = 10452 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 6134 gcggccatggcgatgcgtgc 6153
>ref|XM_812951.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053511771.210) partial mRNA Length = 10365 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 6140 gcggccatggcgatgcgtgc 6159
>ref|XM_813262.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053510465.150) partial mRNA Length = 10452 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 6134 gcggccatggcgatgcgtgc 6153
>ref|XM_804547.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053506623.60) partial mRNA Length = 5973 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 1646 gcggccatggcgatgcgtgc 1665
>ref|XM_813967.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053510355.10) partial mRNA Length = 10353 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 6134 gcggccatggcgatgcgtgc 6153
>ref|XM_813968.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053510355.90) partial mRNA Length = 10293 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 6074 gcggccatggcgatgcgtgc 6093
>ref|XM_814975.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053509287.240) partial mRNA Length = 10392 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 6080 gcggccatggcgatgcgtgc 6099
>ref|XM_815580.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053506173.140) partial mRNA Length = 10329 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 6098 gcggccatggcgatgcgtgc 6117
>ref|XM_815582.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053506173.190) partial mRNA Length = 10350 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 6065 gcggccatggcgatgcgtgc 6084
>ref|XM_797788.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053507855.9) partial mRNA Length = 3034 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 1980 gcggccatggcgatgcgtgc 1999
>ref|XM_797876.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053510925.9) partial mRNA Length = 3342 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 1972 gcggccatggcgatgcgtgc 1991
>ref|XM_799539.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053508591.10) partial mRNA Length = 6066 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 1787 gcggccatggcgatgcgtgc 1806
>ref|XM_799597.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053436137.9) partial mRNA Length = 6483 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 6016 gcggccatggcgatgcgtgc 6035
>ref|XM_800281.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053511009.9) partial mRNA Length = 7954 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 5742 gcggccatggcgatgcgtgc 5761
>ref|XM_800557.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053508803.19) partial mRNA Length = 6617 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 6071 gcggccatggcgatgcgtgc 6090
>ref|XM_801508.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053506111.20) partial mRNA Length = 7666 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 3357 gcggccatggcgatgcgtgc 3376
>ref|XM_801735.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053510867.9) partial mRNA Length = 6785 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 6125 gcggccatggcgatgcgtgc 6144
>ref|XM_805433.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053511007.10) partial mRNA Length = 9732 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 5429 gcggccatggcgatgcgtgc 5448
>ref|XM_806081.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053504241.34) partial mRNA Length = 8340 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 6143 gcggccatggcgatgcgtgc 6162
>ref|XM_808377.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053508001.10) partial mRNA Length = 5294 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggccatggcgatgcgtgc 86 |||||||||||||||||||| Sbjct: 982 gcggccatggcgatgcgtgc 1001
>gb|AC135100.12| Medicago truncatula clone mth2-17j9, complete sequence Length = 113967 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 542 attgtgattaaaaacatttc 561 |||||||||||||||||||| Sbjct: 23342 attgtgattaaaaacatttc 23323
>emb|BX649266.9| Zebrafish DNA sequence from clone DKEY-19J7 in linkage group 9, complete sequence Length = 235135 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 544 tgtgattaaaaacatttcca 563 |||||||||||||||||||| Sbjct: 67521 tgtgattaaaaacatttcca 67502
>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29 Length = 321250 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 cgagaccagctcgccggagc 232 |||||||||||||||||||| Sbjct: 189005 cgagaccagctcgccggagc 189024
>emb|CR859046.1| Pongo pygmaeus mRNA; cDNA DKFZp459B0728 (from clone DKFZp459B0728) Length = 3196 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 532 aagtgcatgcattgtgatta 551 |||||||||||||||||||| Sbjct: 2929 aagtgcatgcattgtgatta 2948
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 gccttctcctaccttgtggg 281 |||||||||||||||||||| Sbjct: 3728636 gccttctcctaccttgtggg 3728655
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 gccacctcgagcacctcgag 318 |||||||||||||||||||| Sbjct: 1955734 gccacctcgagcacctcgag 1955715
>gb|AE004549.1| Pseudomonas aeruginosa PAO1, section 110 of 529 of the complete genome Length = 10375 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 gcttcggcggcatggccttc 267 |||||||||||||||||||| Sbjct: 6910 gcttcggcggcatggccttc 6891
>ref|XM_214682.3| PREDICTED: Rattus norvegicus similar to Formin homology 2 domain containing 1 (LOC291964), mRNA Length = 3346 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 261 ggccttctcctaccttgtgggcct 284 |||||| ||||||||||||||||| Sbjct: 1785 ggccttgtcctaccttgtgggcct 1808
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 tccgaggtcgcggccatggc 77 |||||||||||||||||||| Sbjct: 3148442 tccgaggtcgcggccatggc 3148423
>emb|AL671977.8| Mouse DNA sequence from clone RP23-171A16 on chromosome X, complete sequence Length = 193108 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 424 agttgattttatttgatggc 443 |||||||||||||||||||| Sbjct: 61047 agttgattttatttgatggc 61066 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,691,072 Number of Sequences: 3902068 Number of extensions: 4691072 Number of successful extensions: 88734 Number of sequences better than 10.0: 87 Number of HSP's better than 10.0 without gapping: 87 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88163 Number of HSP's gapped (non-prelim): 561 length of query: 601 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 578 effective length of database: 17,143,297,704 effective search space: 9908826072912 effective search space used: 9908826072912 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
