>SENP1_HUMAN (Q9P0U3) Sentrin-specific protease 1 (EC 3.4.22.-)|
           (Sentrin/SUMO-specific protease SENP1)
          Length = 643

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
 Frame = +1

Query: 217 RIASSRRDKENQDKLD---TRIFDLYMEDLWKRTDEDQKNAYAYLDPLWFNSYVNGGNEQ 387
           R+  +R+D +  + L+     I + YM  L +R+ E    +    +  +F      G + 
Sbjct: 449 RLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNTFFFTKLKTAGYQA 508

Query: 388 KSRILRWTKKLKIFSRKYVFVPIXLWGHWNLLVL 489
              + RWTKK+ +FS   + VPI L  HW L V+
Sbjct: 509 ---VKRWTKKVDVFSVDILLVPIHLGVHWCLAVV 539

>ULP2_SCHPO (O13769) Ubiquitin-like-specific protease 2 (EC 3.4.22.-)|
          Length = 652

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = +1

Query: 397 ILRWTKKLKIFSRKYVFVPIXLWGHWNLLVLCHFD 501
           + +WT+K+ +F +KY+ VPI    HW L ++C+ D
Sbjct: 430 VRKWTQKVDLFHKKYIIVPINETFHWYLAIICNID 464

>SENP7_HUMAN (Q9BQF6) Sentrin-specific protease 7 (EC 3.4.22.-)|
           (Sentrin/SUMO-specific protease SENP7) (SUMO-1-specific
           protease 2)
          Length = 984

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +1

Query: 358 NSYVNGGNEQKSRILRWTKKLKIFSRKYVFVPIXLWGHWNLLVLC 492
           N  ++    +  R+  WT+ + IF++ Y+FVP+    HW L V+C
Sbjct: 757 NPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVIC 801

>SENT_CAEEL (Q09353) Probable sentrin-specific protease (EC 3.4.22.-)|
          Length = 697

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 23/77 (29%), Positives = 41/77 (53%)
 Frame = +1

Query: 259 LDTRIFDLYMEDLWKRTDEDQKNAYAYLDPLWFNSYVNGGNEQKSRILRWTKKLKIFSRK 438
           L+  I + Y++ +  R++ D K    Y    +F  Y N  ++  + + RWT+K+ IF+  
Sbjct: 517 LNDEIINFYLQLICDRSNGDSKYPKIYAFNTFF--YSNIVSKGYASVKRWTRKVDIFAFD 574

Query: 439 YVFVPIXLWGHWNLLVL 489
            V VP+ L  HW + V+
Sbjct: 575 IVLVPVHLGMHWCMAVI 591

>SENP2_RAT (Q9EQE1) Sentrin-specific protease 2 (EC 3.4.22.-)|
           (Sentrin/SUMO-specific protease SENP2) (Axin-associating
           molecule) (Axam)
          Length = 588

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 23/82 (28%), Positives = 42/82 (51%)
 Frame = +1

Query: 244 ENQDKLDTRIFDLYMEDLWKRTDEDQKNAYAYLDPLWFNSYVNGGNEQKSRILRWTKKLK 423
           +N   L+  + + YM  L +R+ +    A   L   ++    +GG +    + RWTK + 
Sbjct: 405 KNYHWLNDEVINFYMNLLVERSKKQGYPALHALSTFFYPKLKSGGYQA---VKRWTKGVN 461

Query: 424 IFSRKYVFVPIXLWGHWNLLVL 489
           +F ++ V VPI    HW+L+V+
Sbjct: 462 LFDQELVLVPIHRKVHWSLVVM 483

>SENP1_MOUSE (P59110) Sentrin-specific protease 1 (EC 3.4.22.-)|
           (Sentrin/SUMO-specific protease SENP1)
          Length = 640

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
 Frame = +1

Query: 217 RIASSRRDKENQDKLD---TRIFDLYMEDLWKRTDEDQKNAYAYLDPLWFNSYVNGGNEQ 387
           R+  +R+D +  + L+     I + YM  L +R+ E    +    +  +F      G + 
Sbjct: 445 RLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGFPSVHAFNTFFFTKLKTAGYQA 504

Query: 388 KSRILRWTKKLKIFSRKYVFVPIXLWGHWNLLVL 489
              + RWTKK+ +FS   + VPI L  HW L V+
Sbjct: 505 ---VKRWTKKVDVFSVDILLVPIHLGVHWCLAVV 535

>SENP2_MOUSE (Q91ZX6) Sentrin-specific protease 2 (EC 3.4.22.-)|
           (Sentrin/SUMO-specific protease SENP2)
           (SUMO-1/Smt3-specific isopeptidase 2) (Smt3ip2) (Axam2)
          Length = 588

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 22/82 (26%), Positives = 41/82 (50%)
 Frame = +1

Query: 244 ENQDKLDTRIFDLYMEDLWKRTDEDQKNAYAYLDPLWFNSYVNGGNEQKSRILRWTKKLK 423
           +N   L+  + + YM  L +R+ +    A       ++    +GG +    + RWTK + 
Sbjct: 405 KNYHWLNDEVINFYMNLLVERSKKQGYPALHAFSTFFYPKLKSGGYQA---VKRWTKGVN 461

Query: 424 IFSRKYVFVPIXLWGHWNLLVL 489
           +F ++ V VPI    HW+L+V+
Sbjct: 462 LFEQELVLVPIHRKVHWSLVVM 483

>SENP2_HUMAN (Q9HC62) Sentrin-specific protease 2 (EC 3.4.22.-)|
           (Sentrin/SUMO-specific protease SENP2) (SMT3-specific
           isopeptidase 2) (Smt3ip2) (Axam2)
          Length = 589

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 21/82 (25%), Positives = 40/82 (48%)
 Frame = +1

Query: 244 ENQDKLDTRIFDLYMEDLWKRTDEDQKNAYAYLDPLWFNSYVNGGNEQKSRILRWTKKLK 423
           +N   L+  + + YM  L +R  +    A       ++    +GG +    + RWTK + 
Sbjct: 406 KNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLKSGGYQA---VKRWTKGVN 462

Query: 424 IFSRKYVFVPIXLWGHWNLLVL 489
           +F ++ + VPI    HW+L+V+
Sbjct: 463 LFEQEIILVPIHRKVHWSLVVI 484

>SENP6_HUMAN (Q9GZR1) Sentrin-specific protease 6 (EC 3.4.22.-)|
           (Sentrin/SUMO-specific protease SENP6) (SUMO-1-specific
           protease 1)
          Length = 1112

 Score = 37.4 bits (85), Expect = 0.023
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 382 EQKSRILRWTKKLKIFSRKYVFVPIXLWGHWNLLVLC 492
           ++  R+  WT+ + IF + ++FVP+    HW L V+C
Sbjct: 736 KRHGRVKTWTRHVDIFEKDFIFVPLNEAAHWFLAVVC 772

>ULP2_YEAST (P40537) Ubiquitin-like-specific protease 2 (EC 3.4.22.-)|
          Length = 1034

 Score = 36.6 bits (83), Expect = 0.040
 Identities = 17/88 (19%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
 Frame = +1

Query: 247 NQDKLDTRIFDLYMEDLWKRTDED---QKNAYAYLDPLWFNSYVNGGNEQKSRILRWTKK 417
           N+D ++  I D + +   + + E    ++     +   ++   ++   +  S + +W   
Sbjct: 454 NKDWVNDSILDFFTKFYIESSIEKSIIKREQVHLMSSFFYTKLISNPADYYSNVKKWVNN 513

Query: 418 LKIFSRKYVFVPIXLWGHWNLLVLCHFD 501
             +FS+KYV +PI +  HW   ++ + D
Sbjct: 514 TDLFSKKYVVIPINISYHWFSCIITNLD 541

>SENP5_MACFA (Q8WP32) Sentrin-specific protease 5 (EC 3.4.22.-)|
           (Sentrin/SUMO-specific protease SENP5)
          Length = 755

 Score = 35.8 bits (81), Expect = 0.068
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = +1

Query: 352 WFNSYVNGGNEQK--SRILRWTKKLKIFSRKYVFVPIXLWGHWNLLVL 489
           +FNS+ +     K  + + RWTKK+ +F +  + +PI L  HW+L+ +
Sbjct: 605 FFNSFFHRQLVTKGYNGVKRWTKKVDLFKKSLLLIPIHLEVHWSLITV 652

>SENP5_HUMAN (Q96HI0) Sentrin-specific protease 5 (EC 3.4.22.-)|
           (Sentrin/SUMO-specific protease SENP5)
          Length = 755

 Score = 35.8 bits (81), Expect = 0.068
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = +1

Query: 352 WFNSYVNGGNEQK--SRILRWTKKLKIFSRKYVFVPIXLWGHWNLLVL 489
           +FNS+ +     K  + + RWTKK+ +F +  + +PI L  HW+L+ +
Sbjct: 605 FFNSFFHRQLVTKGYNGVKRWTKKVDLFKKSLLLIPIHLEVHWSLITV 652

>SENP3_MOUSE (Q9EP97) Sentrin-specific protease 3 (EC 3.4.22.-)|
           (Sentrin/SUMO-specific protease SENP3) (SUMO-1-specific
           protease 3) (Smt3-specific isopeptidase 1) (Smt3ip1)
          Length = 568

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +1

Query: 397 ILRWTKKLKIFSRKYVFVPIXLWGHWNLL 483
           + RWTK + IF+++ + +PI L  HW+L+
Sbjct: 435 VKRWTKNVDIFNKELLLIPIHLEVHWSLI 463

>SENP3_HUMAN (Q9H4L4) Sentrin-specific protease 3 (EC 3.4.22.-)|
           (Sentrin/SUMO-specific protease SENP3) (SUMO-1-specific
           protease 3)
          Length = 574

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +1

Query: 397 ILRWTKKLKIFSRKYVFVPIXLWGHWNLL 483
           + RWTK + IF+++ + +PI L  HW+L+
Sbjct: 441 VKRWTKNVDIFNKELLLIPIHLEVHWSLI 469

>ULP4_CAEEL (Q09275) Putative thiol protease ulp-4 (EC 3.4.22.-)|
           (Ubiquitin-like protease 4)
          Length = 342

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 439 YVFVPIXLWGHWNLLVLCH 495
           Y+ VP+  W HW+L V+CH
Sbjct: 225 YIVVPVNEWEHWSLAVICH 243

>SEO1_YEAST (P39709) Probable transporter SEO1|
          Length = 593

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = +1

Query: 232 RRDKENQ---DKLDTRIFDLYMEDLWKRTDEDQKNAYAYLDPLWFNSYVNGGNEQKSRIL 402
           +R KENQ      +T++FD+    LWK    D K    Y+  LW     N  N      L
Sbjct: 343 KRLKENQTGKSDFETKVFDI---KLWKTIFSDWK---IYILTLWNIFCWNDSNVSSGAYL 396

Query: 403 RWTKKLKIFS 432
            W K LK +S
Sbjct: 397 LWLKSLKRYS 406

>RPOB_PSINU (Q8WI24) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta subunit) (RNA
           polymerase beta subunit)
          Length = 1066

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +1

Query: 292 DLWKRTDEDQKNAYAYLDPLWFNSYVNGGNEQKSRILRWTKKLKIFSRKY 441
           DLWKR D+D K++   +  L+ N Y   G+   S  +R   + K+F +++
Sbjct: 206 DLWKRQDKDIKSSEDAIIELYKNLYCVSGDVTFSESIRKELQRKLFKQRF 255

>AAD3_YEAST (P25612) Putative aryl-alcohol dehydrogenase AAD3 (EC 1.1.1.-)|
          Length = 363

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 19/73 (26%), Positives = 35/73 (47%)
 Frame = +2

Query: 137 STKRMSARASVLERV*GEHRRCLGA*IALQVAEGTRKIKTNWIPVSLIYTWRTFGSVQMK 316
           S K+  A  S      G H+R L     + V +  RK++T+WI +  ++ W    S++  
Sbjct: 104 SDKKYKAGESNTANYCGNHKRSLH----VSVRDSLRKLQTDWIDILYVHWWDYMSSIEEF 159

Query: 317 IRRMLTHIWIRYG 355
           +  +  HI ++ G
Sbjct: 160 MDSL--HILVQQG 170

>AAD14_YEAST (P42884) Putative aryl-alcohol dehydrogenase AAD14 (EC 1.1.1.-)|
          Length = 376

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +2

Query: 185 GEHRRCLGA*IALQVAEGTRKIKTNWIPVSLIYTWRTFGSVQMKIRRMLTHIWIRYG 355
           G H+R L     + V +  RK++T+WI +  I+ W    S++  +  +  HI ++ G
Sbjct: 123 GNHKRSLH----VSVRDSLRKLQTDWIDILYIHWWDYMSSIEEVMDSL--HILVQQG 173

>GCBM_MOUSE (P01867) Ig gamma-2B chain C region, membrane-bound form|
          Length = 404

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 503 SSKWHRTRRFQCPQRXIGTNTYFLENIFSFFVHLRILDFCS 381
           +SKW +T  F C  R  G   Y+L+   S    L + D C+
Sbjct: 302 TSKWEKTDSFSCNVRHEGLKNYYLKKTISRSPGLDLDDICA 342

>PSTC_METJA (Q58420) Probable phosphate transport system permease protein pstC|
          Length = 315

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 277 DLYMEDLWKRTDEDQKNAYAYLDPLWFNSY 366
           DL++ ++WK  +E  K  Y    P+W + Y
Sbjct: 52  DLFITNVWKAAEEPAKEVYGLAAPIWGSIY 81

>AAD10_YEAST (P47182) Putative aryl-alcohol dehydrogenase AAD10 (EC 1.1.1.-)|
          Length = 288

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +2

Query: 185 GEHRRCLGA*IALQVAEGTRKIKTNWIPVSLIYTWRTFGSVQMKIRRMLTHIWIRYG 355
           G H+R L     + V +  RK++T+WI +  ++ W    S++  +  +  HI ++ G
Sbjct: 35  GNHKRSLH----VSVRDSLRKLQTDWIDILYVHWWDYMSSIEEVMDSL--HILVQQG 85

>AAD6_YEAST (P43547) Putative aryl-alcohol dehydrogenase AAD6 (EC 1.1.1.-)|
          Length = 212

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
 Frame = +2

Query: 185 GEHRRCLGA*IALQVAEGTRKIKTNWIPVSLIYTWRTFGSVQ-------MKIRRMLTHIW 343
           G H+R L     + V +  RK++T+WI +  ++ W    S++       + +++  + IW
Sbjct: 123 GNHKRSLH----VSVRDSLRKLQTDWIDILYVHWWDYMSSIEEVMDSLHILVQQARSSIW 178

Query: 344 I 346
           +
Sbjct: 179 V 179


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,864,188
Number of Sequences: 219361
Number of extensions: 1422438
Number of successful extensions: 4296
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 4199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4291
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)