ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags5p03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PYRG_CAUCR (Q9A7K3) CTP synthase (EC 6.3.4.2) (UTP--ammonia liga... 32 1.7
2SYAC_SCHPO (O13914) Probable alanyl-tRNA synthetase, cytoplasmic... 32 1.7
3MEI2_CAEEL (O44740) Meiotic spindle formation protein 2 31 3.8
4MOL2A_MOUSE (Q8BSU7) Mps one binder kinase activator-like 2A (Mo... 31 3.8
5ASM3_CAEEL (Q9UAY4) Putative sphingomyelin phosphodiesterase asm... 30 5.0
6RL2_RICPR (Q9ZCQ8) 50S ribosomal protein L2 30 6.6
7GUN4_RUMAL (Q07940) Endoglucanase 4 (EC 3.2.1.4) (Endoglucanase ... 30 6.6
8PMA6_ARATH (Q9SH76) ATPase 6, plasma membrane-type (EC 3.6.3.6) ... 30 6.6
9OB57D_DROME (Q8MMF9) General odorant-binding protein 57d precursor 30 8.6

>PYRG_CAUCR (Q9A7K3) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP|
           synthetase)
          Length = 550

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +1

Query: 235 ETNISFVDSFDDPGPHGAGRYSEHMLPEIVKRD---WRKGAQW 354
           E NI +V   +D G    GR    +LPEIV+RD   W  G Q+
Sbjct: 479 EVNIGYVHLMEDAGLKLTGRSPNGVLPEIVERDDHPWFIGVQY 521



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>SYAC_SCHPO (O13914) Probable alanyl-tRNA synthetase, cytoplasmic (EC 6.1.1.7)|
           (Alanine--tRNA ligase) (AlaRS)
          Length = 959

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = +1

Query: 427 CKPGNEYHNCYSDEHYLPTLFNMVDPTGIANWSVTRVDWS---EGKWHPKVYRAVDT--S 591
           C P +E H        +P L NM DP  +  W++  + ++   +G   P   R VDT   
Sbjct: 189 CGPCSEIHYDRIGNRTVPELVNMDDPNVLEIWNIVFIQFNREKDGSLRPLPNRHVDTGMG 248

Query: 592 FELLKSI 612
           FE L S+
Sbjct: 249 FERLVSV 255



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>MEI2_CAEEL (O44740) Meiotic spindle formation protein 2|
          Length = 280

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
 Frame = -2

Query: 294 STCSMWTRIIERVNKADVCFHEITIHI-IEVMQWYTTLREQ----DKMLVISILQCICQE 130
           S  S+W+   E VNK  VC    + ++ +  M+ +T+  EQ    D  L  ++++ +   
Sbjct: 109 SNASLWSACTEEVNKIGVCAKRESRNLRVYKMKSFTSNMEQILSNDNQLAPTVIRILNSR 168

Query: 129 PPLCINHSNCTPDHLFTPNIPASEYRTCMNCLXLLEACT 13
              C+N  +     +   NI +  Y     CL  L + T
Sbjct: 169 NSWCLNSCHACLTFIM-ENITSDNYGKRSACLKALASIT 206



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>MOL2A_MOUSE (Q8BSU7) Mps one binder kinase activator-like 2A (Mob1 homolog 2A)|
          Length = 217

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 400 LYYGKFKRYCKPGNEYH--NCYSDEHYLPTLFNMVDP 504
           +Y   F R  + G+E H   CY   +Y  T FN++DP
Sbjct: 166 VYIHHFDRIAQMGSEAHVNTCYKHFYYFVTEFNLIDP 202



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>ASM3_CAEEL (Q9UAY4) Putative sphingomyelin phosphodiesterase asm-3 precursor|
           (EC 3.1.4.12)
          Length = 589

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 39/188 (20%), Positives = 65/188 (34%), Gaps = 28/188 (14%)
 Frame = +1

Query: 70  DIRSEKVVWGTVTMIDAERRLLANALQD----ADNQHFVLLSESCVP---------LHNF 210
           D++     WG+V   D    LL N LQ+    A    ++++S   V           H+F
Sbjct: 174 DVKQPAGPWGSVGSCDTPYWLLTNMLQNIASTAGKLDYIMVSGDLVSHTVWAYTPETHSF 233

Query: 211 ------DYVYSYLMETNISFVDSFDDPGPHGAGRYSEHMLPEIVKRDWRKGAQ------W 354
                 D + SY  +T + F     +  P      + H  P+    DW   A       W
Sbjct: 234 MVKNLSDTIRSYFPKTPVYFAVGNHEGVP--VDNIAPHFTPKKYHMDWLYKAMSNAWQGW 291

Query: 355 FTVKRQHAVLILVDTLYYGKFKRYCKPGNEY---HNCYSDEHYLPTLFNMVDPTGIANWS 525
               ++ ++       Y G + +    G      +N Y D        N  DP G   W 
Sbjct: 292 IPADQEKSLE------YNGCYMKKIYDGLRMISLNNVYGDRINFWLYINQTDPDGTLQWL 345

Query: 526 VTRVDWSE 549
           + ++  +E
Sbjct: 346 INQLQDAE 353



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>RL2_RICPR (Q9ZCQ8) 50S ribosomal protein L2|
          Length = 273

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = +1

Query: 475 LPTLFNMVDPTGIANWSVTRVDWSEGKWHPKVYRAVDTSFELLKSIASIDESISRDQQRK 654
           L TL   +  TG  N       W  G  H K+YR +D   + +  I++I E I  D  R 
Sbjct: 30  LKTLTKGMSKTGGRNQQGRITSWHRGGGHKKLYRVIDFKRKKI-DISAIVERIEYDPNRT 88

Query: 655 A 657
           A
Sbjct: 89  A 89



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>GUN4_RUMAL (Q07940) Endoglucanase 4 (EC 3.2.1.4) (Endoglucanase IV)|
           (Endo-1,4-beta-glucanase) (Cellulase) (EG-IV)
          Length = 312

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = +1

Query: 280 HGAGRYSEHMLPE---IVKRDWRKGAQWFTVKRQHAVLILVDTLYYGKFKRYCKPGNEYH 450
           HG   Y E++  E    +K+DWR                +   +Y  +F+ YCK GN+ H
Sbjct: 27  HGIAWYPEYICEESFNALKKDWRTNC-------------IRIAMYTDEFRGYCKDGNKQH 73



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>PMA6_ARATH (Q9SH76) ATPase 6, plasma membrane-type (EC 3.6.3.6) (Proton pump|
           6)
          Length = 949

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
 Frame = +1

Query: 34  KTVHASPIFAGRDIR-SEKVVWGTVTMIDAERRLLANALQDADNQHFVLLSESCVPLHNF 210
           K + A    AG D+  S+K    T+  +  ++ L+    +D D  + +LLS     + N 
Sbjct: 315 KRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFSKDVDKDYVILLSARASRVENQ 374

Query: 211 DYVYSYLMETNISFVDSFDDPGPHGAGRYSEHMLP 315
           D +       + S V+   DP    AG    H LP
Sbjct: 375 DAI-------DTSIVNMLGDPKEARAGITEVHFLP 402



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>OB57D_DROME (Q8MMF9) General odorant-binding protein 57d precursor|
          Length = 136

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = +1

Query: 226 YLMETNISFVDSFDDPGPHGAGRYSEHMLPEIVKRDWRKGAQWFTVKRQHAVLILVDTLY 405
           +++E      DS +DP PH  G   +  + E +  DW       +VKR H   +     Y
Sbjct: 18  FILEIQFRIADS-NDPCPHNQG--IDEDIAESILGDWPANVDLTSVKRSHKCYVTCILQY 74

Query: 406 Y 408
           Y
Sbjct: 75  Y 75


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,471,468
Number of Sequences: 219361
Number of extensions: 2074160
Number of successful extensions: 5435
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5435
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6484657212
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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