ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags5p01 |
|---|---|
| Clone Library Name | barley_pub |
>GLTP_PIG (P68266) Glycolipid transfer protein (GLTP)| Length = 208 Score = 61.2 bits (147), Expect = 2e-09 Identities = 49/187 (26%), Positives = 89/187 (47%), Gaps = 15/187 (8%) Frame = +1 Query: 28 GDFSRACSNVSVLFGCLGI-AFKFAEMDY---VAKVNDLLEASKT-ISTLPSMVELDIQK 192 G F A S++ F CLG F + D + K+ + + + T TL +++E++ + Sbjct: 20 GPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVEKEM 79 Query: 193 GTVRQPG-SHTRNLLRVKRGIDMVKVLFEQILVTEG-----NSLKDAATKAYAQVFAPHH 354 P T L+ +KRG+ ++V + I E N ++ ATKAY +H Sbjct: 80 YGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYH 139 Query: 355 GWAIRKAVGAGMYALPSKSQLLKKLNEDENSARAQ----MQSFVRSSGQVILYVEDLFTS 522 GW ++K A +YA P KS LK L++ +N + ++ F+ + I + +++T Sbjct: 140 GWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEEECLEKVRLFLVNYTATIDVIYEMYTR 199 Query: 523 SNLGLDW 543 N L++ Sbjct: 200 MNAELNY 206
>GLTP_BOVIN (P68265) Glycolipid transfer protein (GLTP)| Length = 208 Score = 61.2 bits (147), Expect = 2e-09 Identities = 49/187 (26%), Positives = 89/187 (47%), Gaps = 15/187 (8%) Frame = +1 Query: 28 GDFSRACSNVSVLFGCLGI-AFKFAEMDY---VAKVNDLLEASKT-ISTLPSMVELDIQK 192 G F A S++ F CLG F + D + K+ + + + T TL +++E++ + Sbjct: 20 GPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVEKEM 79 Query: 193 GTVRQPG-SHTRNLLRVKRGIDMVKVLFEQILVTEG-----NSLKDAATKAYAQVFAPHH 354 P T L+ +KRG+ ++V + I E N ++ ATKAY +H Sbjct: 80 YGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYH 139 Query: 355 GWAIRKAVGAGMYALPSKSQLLKKLNEDENSARAQ----MQSFVRSSGQVILYVEDLFTS 522 GW ++K A +YA P KS LK L++ +N + ++ F+ + I + +++T Sbjct: 140 GWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEEECLEKVRLFLVNYTATIDVIYEMYTR 199 Query: 523 SNLGLDW 543 N L++ Sbjct: 200 MNAELNY 206
>GLTP_HUMAN (Q9NZD2) Glycolipid transfer protein (GLTP)| Length = 208 Score = 60.1 bits (144), Expect = 5e-09 Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 15/187 (8%) Frame = +1 Query: 28 GDFSRACSNVSVLFGCLGI-AFKFAEMDYVAKVNDLLEASKT----ISTLPSMVELDIQK 192 G F A S++ F CLG F + D + + T TL +++E++ + Sbjct: 20 GPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEM 79 Query: 193 GTVRQPG-SHTRNLLRVKRGIDMVKVLFEQILVTEG-----NSLKDAATKAYAQVFAPHH 354 P T L+ +KRG+ ++V + I E N ++ ATKAY +H Sbjct: 80 YGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYH 139 Query: 355 GWAIRKAVGAGMYALPSKSQLLKKLNEDENSARAQ----MQSFVRSSGQVILYVEDLFTS 522 GW ++K A +YA P KS LK L++ +N + ++ F+ + I + +++T Sbjct: 140 GWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEEECLEKIRLFLVNYTATIDVIYEMYTQ 199 Query: 523 SNLGLDW 543 N L++ Sbjct: 200 MNAELNY 206
>GLTP_MOUSE (Q9JL62) Glycolipid transfer protein (GLTP)| Length = 208 Score = 59.7 bits (143), Expect = 7e-09 Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 15/187 (8%) Frame = +1 Query: 28 GDFSRACSNVSVLFGCLGI-AFKFAEMDYVAKVNDLLEASKT----ISTLPSMVELDIQK 192 G F A +++ F CLG F + D + + T TL +++E++ Sbjct: 20 GPFLEAVAHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTDPAKFKTLQNILEVEKGM 79 Query: 193 GTVRQPG-SHTRNLLRVKRGIDMVKVLFEQILVTEG-----NSLKDAATKAYAQVFAPHH 354 P T LL +KRG+ ++V + I E N ++ A KAY +H Sbjct: 80 YGAEWPKVGATLALLWLKRGLRFIQVFLQSICDGERDENHPNLIRVNANKAYEMALKKYH 139 Query: 355 GWAIRKAVGAGMYALPSKSQLLKKLNEDENSARAQ----MQSFVRSSGQVILYVEDLFTS 522 GW ++K A +YA P KS LK L++ +N + ++ F+ + I + D++T Sbjct: 140 GWLVQKIFKAALYAAPYKSDFLKALSKGQNVTEEECLEKIRLFLVNYTATIDAIYDMYTK 199 Query: 523 SNLGLDW 543 N LD+ Sbjct: 200 MNAELDY 206
>CREA_ASPAC (O94166) DNA-binding protein creA (Carbon catabolite repressor)| Length = 431 Score = 32.3 bits (72), Expect = 1.2 Identities = 29/81 (35%), Positives = 31/81 (38%), Gaps = 20/81 (24%) Frame = -1 Query: 391 TFQHQLLSLWPSHGEEQTPEHKPLLLRPSGSC----------------LL*PISAQTE-- 266 TF H LLS P H TP H P LRP GS L P+ Q E Sbjct: 305 TFSHDLLSPTPDHTPLATPAHSP-RLRPLGSSDLHLPSIRHLSLHHTPALAPMEPQPEGP 363 Query: 265 --LSPYQSHA*PSVDSSYGSP 209 SP QSH PS+ P Sbjct: 364 SYYSPSQSHG-PSITDIMSKP 383
>ADA29_HUMAN (Q9UKF5) ADAM 29 precursor (A disintegrin and metalloproteinase| domain 29) Length = 820 Score = 31.6 bits (70), Expect = 2.1 Identities = 24/79 (30%), Positives = 34/79 (43%) Frame = -1 Query: 361 PSHGEEQTPEHKPLLLRPSGSCLL*PISAQTELSPYQSHA*PSVDSSYGSPAA*QCPSEC 182 PS EE+ + +P L P + P +Q ++P QSH P V S P PS+ Sbjct: 713 PSAKEEEKIQRRPHELPPQSQPWVMPSQSQPPVTPSQSH--PQVMPSQSQPPV--MPSQS 768 Query: 181 QAQPWRAMSKSSWMPPVDH 125 Q + S+ MP H Sbjct: 769 HPQLTPSQSQPPVMPSQSH 787
>HS90A_CHICK (P11501) Heat shock protein HSP 90-alpha| Length = 728 Score = 31.6 bits (70), Expect = 2.1 Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 5/126 (3%) Frame = +1 Query: 97 AEMDYVAKVNDLLEASKTISTLPSMVELDIQKG-----TVRQPGSHTRNLLRVKRGIDMV 261 A M+ + K L + S T+ + + L+I T+RQ +N VK D+V Sbjct: 604 ANMERIMKAQALRDNS-TMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVK---DLV 659 Query: 262 KVLFEQILVTEGNSLKDAATKAYAQVFAPHHGWAIRKAVGAGMYALPSKSQLLKKLNEDE 441 +L+E L++ G SL+D T A G I + A A P+ ++ + L D+ Sbjct: 660 ILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDTAAEEASPAVTEEMPPLEGDD 719 Query: 442 NSARAQ 459 +++R + Sbjct: 720 DTSRME 725
>CREA_ASPNG (Q05620) DNA-binding protein creA (Carbon catabolite repressor)| Length = 427 Score = 31.2 bits (69), Expect = 2.7 Identities = 27/81 (33%), Positives = 29/81 (35%), Gaps = 20/81 (24%) Frame = -1 Query: 391 TFQHQLLSLWPSHGEEQTPEHKPLLLRPSGSC----------------LL*PISAQTE-- 266 TF H LS P H TP H P LRP GS L P+ Q E Sbjct: 301 TFSHDSLSPTPDHTPLATPAHSP-RLRPLGSSDLHLPSIRHLSLHHTPALAPMEPQPEGP 359 Query: 265 --LSPYQSHA*PSVDSSYGSP 209 SP Q H PS+ P Sbjct: 360 NYYSPSQGHHGPSISDIMSKP 380
>FAD3C_RICCO (P48619) Omega-3 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) Length = 460 Score = 29.6 bits (65), Expect = 7.9 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +3 Query: 294 RQLPEGRSNKGLCSGVCSSPWLGHKESSWCWNV 392 R+LP+ +S LCS S W K+S+W NV Sbjct: 37 RELPDSKSYN-LCSSFKVSSWSNSKQSNWALNV 68 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,384,609 Number of Sequences: 219361 Number of extensions: 1697115 Number of successful extensions: 4486 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 4348 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4483 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5995743495 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
