ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6e01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_550475.1| Oryza sativa (japonica cultivar-group), mRNA 157 5e-35
2dbj|AK101114.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 5e-35
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
4dbj|AP002805.2| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
5dbj|AP000616.2| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
6dbj|AB033662.1| Oryza sativa (japonica cultivar-group) DNA, chro... 121 3e-24
7gb|AY106718.1| Zea mays PCO131575 mRNA sequence 107 4e-20
8gb|AF509746.1| Hordeum vulgare subsp. spontaneum OSU6 receptor-l... 82 2e-12
9gb|AF509745.1| Hordeum vulgare subsp. vulgare Steptoe receptor-l... 82 2e-12
10gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence 80 9e-12
11gb|AY133251.1|AY133250S2 Hordeum vulgare subsp. vulgare starch s... 80 9e-12
12emb|AJ234485.1|HVU234485 Hordeum vulgare genomic DNA fragment; c... 78 4e-11
13emb|X83518.1|HVKNOX3 H.vulgare Knox3 gene 70 9e-09
14gb|DQ175992.1| Hordeum vulgare subsp. vulgare clone 65-22A-RB fl... 68 3e-08
15dbj|AB024006.1| Hordeum vulgare naat-B and naat-A genes for nico... 68 3e-08
16gb|AF509744.1| Hordeum vulgare subsp. vulgare Morex receptor-lik... 66 1e-07
17emb|AJ249141.1|HVU249141 Hordeum vulgare mRNA for MADS-box prote... 64 5e-07
18emb|Z28347.1|HVPLASC1 H.vulgare (NK 1558) gene for plastocyanin 64 5e-07
19gb|AY821694.1| Crithopsis delileana beta amylase gene, partial c... 58 3e-05
20gb|DQ201146.1| Hordeum vulgare subsp. vulgare cultivar Kompolti ... 52 0.002
21gb|DQ238106.1| Hordeum vulgare subsp. vulgare cv. Morex phytochr... 52 0.002
22gb|DQ201145.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo p... 52 0.002
23gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones B... 50 0.008
24ref|XM_360942.1| Magnaporthe grisea 70-15 hypothetical protein (... 46 0.12
25gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.12
26gb|AC116426.1| Genomic sequence for Oryza sativa, Nipponbare str... 46 0.12
27gb|AC115687.1| Genomic sequence for Oryza sativa, Nipponbare str... 46 0.12
28dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
29dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.49
30gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, ... 44 0.49
31dbj|AP004120.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.49
32ref|NM_115183.2| Arabidopsis thaliana ATP binding / hydrolase/ n... 42 1.9
33gb|AC150004.3| Mus musculus chromosome 7, clone RP24-368P9, comp... 42 1.9
34ref|XM_766049.1| Giardia lamblia ATCC 50803 hypothetical protein... 42 1.9
35emb|X64560.1|HVHSP17A H.vulgare hsp17 gene for 17 kd heat shock ... 42 1.9
36emb|CR931733.2| Medicago truncatula chromosome 5 clone mth2-38a... 42 1.9
37gb|AC011418.5| Homo sapiens chromosome 5 clone CTB-9P16, complet... 42 1.9
38emb|CR954185.2| Medicago truncatula chromosome 5 clone mth4-20m5... 42 1.9
39gb|AC102628.5| Mus musculus chromosome 7, clone RP23-467K15, com... 42 1.9
40gb|AC152947.1| Mus musculus 10 BAC RP23-12H20 (Roswell Park Canc... 40 7.7
41gb|AC132371.2| Mus musculus BAC clone RP23-477D20 from chromosom... 40 7.7
42gb|DQ484014.1| Gymnogyps californianus clone 180G microsatellite... 40 7.7
43gb|AY363103.1|AY363102S2 Mus musculus diadenosine triphosphate h... 40 7.7
44emb|AL122034.29|HSDJ90K10 Human DNA sequence from clone RP1-90K1... 40 7.7
45emb|BX321863.1| Nitrosomonas europaea ATCC 19718, complete genom... 40 7.7
46dbj|AK162353.1| Mus musculus adult male epididymis cDNA, RIKEN f... 40 7.7
47dbj|AK165148.1| Mus musculus 2 days pregnant adult female ovary ... 40 7.7
48ref|XM_394969.2| PREDICTED: Apis mellifera similar to ATPase fam... 40 7.7
49dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
50dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
51gb|AC114802.5| Homo sapiens BAC clone RP11-790N8 from 2, complet... 40 7.7
52gb|AC129600.4| Mus musculus BAC clone RP23-361D7 from chromosome... 40 7.7
53gb|AC106715.5| Homo sapiens 3 BAC RP11-695J20 (Roswell Park Canc... 40 7.7
54dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
55dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
56dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
57gb|AC149285.5| Mus musculus BAC clone RP23-139J2 from 5, complet... 40 7.7
58gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.7
59emb|AL831811.5|CNS08CAO Oryza sativa chromosome 12, . BAC OJ1561... 40 7.7
60gb|AC144631.3| Mus musculus BAC clone RP23-112C14 from 3, comple... 40 7.7
61emb|AL589696.10| Mouse DNA sequence from clone RP23-454M13 on ch... 40 7.7 
>ref|XM_550475.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2663

 Score =  157 bits (79), Expect = 5e-35
 Identities = 115/127 (90%)
 Strand = Plus / Plus

                                                                        
Query: 7    ggtgtttatgttattggagctacgaacagaattgatgttatagatgaggctgttctacgg 66
            ||||||| ||||||||||||||| |||||||||||||| |||||||| || |  || || 
Sbjct: 1928 ggtgtttttgttattggagctacaaacagaattgatgtgatagatgatgcagcacttcga 1987

                                                                        
Query: 67   cctggtagatttgggaagaaacattttgtacctttacctggtgctgatgagcgggttgcg 126
            |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 1988 cctggtagatttggcaagaaacattatgtacctttacctggtgctgatgagcgggtttcg 2047

                   
Query: 127  atattga 133
            |||||||
Sbjct: 2048 atattga 2054



 Score =  131 bits (66), Expect = 3e-27
 Identities = 108/122 (88%)
 Strand = Plus / Plus

                                                                        
Query: 187  gcacgtcgagaggagtgcaataatctcactggtgctgacctggcatcactggtgaacgaa 246
            |||||| ||||||| ||||| |||||||||||||||||||| |||||| ||||||| |||
Sbjct: 2108 gcacgtagagaggaatgcaaaaatctcactggtgctgacctagcatcaatggtgaatgaa 2167

                                                                        
Query: 247  gcagccatggcagcgttggaagagaggtgcgaattcctggcgaaaggggactcgtcaatg 306
            |||||||||||||| ||||||||||||   || ||||||| ||| ||||| |||||||||
Sbjct: 2168 gcagccatggcagcattggaagagaggctggagttcctggagaatggggaatcgtcaatg 2227

              
Query: 307  ag 308
            ||
Sbjct: 2228 ag 2229



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                   
Query: 368  agccctcagtatcagaacagcaaaggaaacacttcgacgcgctgtcaaagaaata 422
            |||| |||||||| ||||||||||||| ||||| ||| ||| |||  ||||||||
Sbjct: 2283 agccatcagtatctgaacagcaaaggagacactacgaggcgttgtgcaagaaata 2337
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>dbj|AK101114.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025G10, full
            insert sequence
          Length = 2664

 Score =  157 bits (79), Expect = 5e-35
 Identities = 115/127 (90%)
 Strand = Plus / Plus

                                                                        
Query: 7    ggtgtttatgttattggagctacgaacagaattgatgttatagatgaggctgttctacgg 66
            ||||||| ||||||||||||||| |||||||||||||| |||||||| || |  || || 
Sbjct: 1929 ggtgtttttgttattggagctacaaacagaattgatgtgatagatgatgcagcacttcga 1988

                                                                        
Query: 67   cctggtagatttgggaagaaacattttgtacctttacctggtgctgatgagcgggttgcg 126
            |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 1989 cctggtagatttggcaagaaacattatgtacctttacctggtgctgatgagcgggtttcg 2048

                   
Query: 127  atattga 133
            |||||||
Sbjct: 2049 atattga 2055



 Score =  131 bits (66), Expect = 3e-27
 Identities = 108/122 (88%)
 Strand = Plus / Plus

                                                                        
Query: 187  gcacgtcgagaggagtgcaataatctcactggtgctgacctggcatcactggtgaacgaa 246
            |||||| ||||||| ||||| |||||||||||||||||||| |||||| ||||||| |||
Sbjct: 2109 gcacgtagagaggaatgcaaaaatctcactggtgctgacctagcatcaatggtgaatgaa 2168

                                                                        
Query: 247  gcagccatggcagcgttggaagagaggtgcgaattcctggcgaaaggggactcgtcaatg 306
            |||||||||||||| ||||||||||||   || ||||||| ||| ||||| |||||||||
Sbjct: 2169 gcagccatggcagcattggaagagaggctggagttcctggagaatggggaatcgtcaatg 2228

              
Query: 307  ag 308
            ||
Sbjct: 2229 ag 2230



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                   
Query: 368  agccctcagtatcagaacagcaaaggaaacacttcgacgcgctgtcaaagaaata 422
            |||| |||||||| ||||||||||||| ||||| ||| ||| |||  ||||||||
Sbjct: 2284 agccatcagtatctgaacagcaaaggagacactacgaggcgttgtgcaagaaata 2338
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score =  121 bits (61), Expect = 3e-24
 Identities = 91/101 (90%)
 Strand = Plus / Plus

                                                                          
Query: 33     cagaattgatgttatagatgaggctgttctacggcctggtagatttgggaagaaacattt 92
              |||||||||||| |||||||| || |  || || |||||||||||||| |||||||||| 
Sbjct: 553574 cagaattgatgtgatagatgatgcagcacttcgacctggtagatttggcaagaaacatta 553633

                                                       
Query: 93     tgtacctttacctggtgctgatgagcgggttgcgatattga 133
              ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 553634 tgtacctttacctggtgctgatgagcgggtttcgatattga 553674



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 63/72 (87%)
 Strand = Plus / Plus

                                                                          
Query: 237    ggtgaacgaagcagccatggcagcgttggaagagaggtgcgaattcctggcgaaagggga 296
              |||||| ||||||||||||||||| ||||||||||||   || ||||||| ||| |||||
Sbjct: 554025 ggtgaatgaagcagccatggcagcattggaagagaggctggagttcctggagaatgggga 554084

                          
Query: 297    ctcgtcaatgag 308
               |||||||||||
Sbjct: 554085 atcgtcaatgag 554096



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                   
Query: 187    gcacgtcgagaggagtgcaataatctcactggtgctgacctggcatcactggt 239
              |||||| ||||||| ||||| |||||||||||||||||||| |||||| ||||
Sbjct: 553728 gcacgtagagaggaatgcaaaaatctcactggtgctgacctagcatcaatggt 553780



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 7      ggtgtttatgttattggagctacgaacag 35
              ||||||| ||||||||||||||| |||||
Sbjct: 553466 ggtgtttttgttattggagctacaaacag 553494



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 478     tacttcccctgttccaaaataaat 501
               ||||||| ||||||||||||||||
Sbjct: 8355221 tacttcctctgttccaaaataaat 8355198
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>dbj|AP002805.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0004I20
          Length = 94135

 Score =  121 bits (61), Expect = 3e-24
 Identities = 91/101 (90%)
 Strand = Plus / Plus

                                                                         
Query: 33    cagaattgatgttatagatgaggctgttctacggcctggtagatttgggaagaaacattt 92
             |||||||||||| |||||||| || |  || || |||||||||||||| |||||||||| 
Sbjct: 30191 cagaattgatgtgatagatgatgcagcacttcgacctggtagatttggcaagaaacatta 30250

                                                      
Query: 93    tgtacctttacctggtgctgatgagcgggttgcgatattga 133
             ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 30251 tgtacctttacctggtgctgatgagcgggtttcgatattga 30291



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 63/72 (87%)
 Strand = Plus / Plus

                                                                         
Query: 237   ggtgaacgaagcagccatggcagcgttggaagagaggtgcgaattcctggcgaaagggga 296
             |||||| ||||||||||||||||| ||||||||||||   || ||||||| ||| |||||
Sbjct: 30642 ggtgaatgaagcagccatggcagcattggaagagaggctggagttcctggagaatgggga 30701

                         
Query: 297   ctcgtcaatgag 308
              |||||||||||
Sbjct: 30702 atcgtcaatgag 30713



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                  
Query: 187   gcacgtcgagaggagtgcaataatctcactggtgctgacctggcatcactggt 239
             |||||| ||||||| ||||| |||||||||||||||||||| |||||| ||||
Sbjct: 30345 gcacgtagagaggaatgcaaaaatctcactggtgctgacctagcatcaatggt 30397



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 7     ggtgtttatgttattggagctacgaacag 35
             ||||||| ||||||||||||||| |||||
Sbjct: 30083 ggtgtttttgttattggagctacaaacag 30111
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>dbj|AP000616.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
             clone:P0514G12
          Length = 138929

 Score =  121 bits (61), Expect = 3e-24
 Identities = 91/101 (90%)
 Strand = Plus / Plus

                                                                         
Query: 33    cagaattgatgttatagatgaggctgttctacggcctggtagatttgggaagaaacattt 92
             |||||||||||| |||||||| || |  || || |||||||||||||| |||||||||| 
Sbjct: 99082 cagaattgatgtgatagatgatgcagcacttcgacctggtagatttggcaagaaacatta 99141

                                                      
Query: 93    tgtacctttacctggtgctgatgagcgggttgcgatattga 133
             ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 99142 tgtacctttacctggtgctgatgagcgggtttcgatattga 99182



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 63/72 (87%)
 Strand = Plus / Plus

                                                                         
Query: 237   ggtgaacgaagcagccatggcagcgttggaagagaggtgcgaattcctggcgaaagggga 296
             |||||| ||||||||||||||||| ||||||||||||   || ||||||| ||| |||||
Sbjct: 99533 ggtgaatgaagcagccatggcagcattggaagagaggctggagttcctggagaatgggga 99592

                         
Query: 297   ctcgtcaatgag 308
              |||||||||||
Sbjct: 99593 atcgtcaatgag 99604



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                  
Query: 187   gcacgtcgagaggagtgcaataatctcactggtgctgacctggcatcactggt 239
             |||||| ||||||| ||||| |||||||||||||||||||| |||||| ||||
Sbjct: 99236 gcacgtagagaggaatgcaaaaatctcactggtgctgacctagcatcaatggt 99288



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 7     ggtgtttatgttattggagctacgaacag 35
             ||||||| ||||||||||||||| |||||
Sbjct: 98974 ggtgtttttgttattggagctacaaacag 99002
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>dbj|AB033662.1| Oryza sativa (japonica cultivar-group) DNA, chromosome 6, 2.7cM, RFLP
            marker, clone:G8017
          Length = 1695

 Score =  121 bits (61), Expect = 3e-24
 Identities = 91/101 (90%)
 Strand = Plus / Plus

                                                                        
Query: 33   cagaattgatgttatagatgaggctgttctacggcctggtagatttgggaagaaacattt 92
            |||||||||||| |||||||| || |  || || |||||||||||||| |||||||||| 
Sbjct: 919  cagaattgatgtgatagatgatgcagcacttcgacctggtagatttggcaagaaacatta 978

                                                     
Query: 93   tgtacctttacctggtgctgatgagcgggttgcgatattga 133
            ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 979  tgtacctttacctggtgctgatgagcgggtttcgatattga 1019



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 63/72 (87%)
 Strand = Plus / Plus

                                                                        
Query: 237  ggtgaacgaagcagccatggcagcgttggaagagaggtgcgaattcctggcgaaagggga 296
            |||||| ||||||||||||||||| ||||||||||||   || ||||||| ||| |||||
Sbjct: 1370 ggtgaatgaagcagccatggcagcattggaagagaggctggagttcctggagaatgggga 1429

                        
Query: 297  ctcgtcaatgag 308
             |||||||||||
Sbjct: 1430 atcgtcaatgag 1441



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                 
Query: 187  gcacgtcgagaggagtgcaataatctcactggtgctgacctggcatcactggt 239
            |||||| ||||||| ||||| |||||||||||||||||||| |||||| ||||
Sbjct: 1073 gcacgtagagaggaatgcaaaaatctcactggtgctgacctagcatcaatggt 1125



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 7   ggtgtttatgttattggagctacgaacag 35
           ||||||| ||||||||||||||| |||||
Sbjct: 811 ggtgtttttgttattggagctacaaacag 839
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>gb|AY106718.1| Zea mays PCO131575 mRNA sequence
          Length = 706

 Score =  107 bits (54), Expect = 4e-20
 Identities = 81/90 (90%)
 Strand = Plus / Plus

                                                                       
Query: 22  ggagctacgaacagaattgatgttatagatgaggctgttctacggcctggtagatttggg 81
           |||||||| |||||||||||| | |||||||| ||| | ||||||||||||||||| |||
Sbjct: 63  ggagctacaaacagaattgatatgatagatgatgctatgctacggcctggtagattcggg 122

                                         
Query: 82  aagaaacattttgtacctttacctggtgct 111
           |||||||||| ||||||| |||||||||||
Sbjct: 123 aagaaacattatgtacctatacctggtgct 152



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                       
Query: 187 gcacgtcgagaggagtgcaataatctcactggtgctgacctggcatcactggtgaacgaa 246
           |||| |||||| |||||||  ||| ||||||| || ||||| |||||||||||| | || 
Sbjct: 228 gcacttcgagaagagtgcagcaatttcactggcgccgacctagcatcactggtggatgag 287

                    
Query: 247 gcagccatg 255
           |||||||||
Sbjct: 288 gcagccatg 296
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>gb|AF509746.1| Hordeum vulgare subsp. spontaneum OSU6 receptor-like kinase gene,
            complete cds
          Length = 2513

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 50/53 (94%)
 Strand = Plus / Plus

                                                                 
Query: 491  ccaaaataaatgtctcaaccttgtactagctctagtataaaattgtactaagc 543
            ||||||||| ||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 1323 ccaaaataattgtctcaactttgtactagctctagtataaaattgtattaagc 1375
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>gb|AF509745.1| Hordeum vulgare subsp. vulgare Steptoe receptor-like kinase gene,
            complete cds
          Length = 2550

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 50/53 (94%)
 Strand = Plus / Plus

                                                                 
Query: 491  ccaaaataaatgtctcaaccttgtactagctctagtataaaattgtactaagc 543
            ||||||||| ||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 1348 ccaaaataattgtctcaactttgtactagctctagtataaaattgtattaagc 1400
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>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence
          Length = 211664

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 49/52 (94%)
 Strand = Plus / Plus

                                                                  
Query: 492    caaaataaatgtctcaaccttgtactagctctagtataaaattgtactaagc 543
              |||||||||||||||||| ||||||||||||||||| ||| |||||||||||
Sbjct: 206036 caaaataaatgtctcaactttgtactagctctagtacaaagttgtactaagc 206087
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>gb|AY133251.1|AY133250S2 Hordeum vulgare subsp. vulgare starch synthase II gene, exon 9 and
           complete cds
          Length = 3856

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 65/72 (90%), Gaps = 1/72 (1%)
 Strand = Plus / Minus

                                                                       
Query: 491 ccaaaataaatgtctcaaccttgtactagctctagtataaaattgtactaagcctctaga 550
           ||||||||| ||||||||| ||||||||||||||||| |||||||||||| | ||| |||
Sbjct: 988 ccaaaataactgtctcaactttgtactagctctagtacaaaattgtactacg-ctcaaga 930

                       
Query: 551 caattattttgg 562
           || |||||||||
Sbjct: 929 cacttattttgg 918
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>emb|AJ234485.1|HVU234485 Hordeum vulgare genomic DNA fragment; clone MWG0526.rev
          Length = 379

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                              
Query: 492 caaaataaatgtctcaaccttgtactagctctagtataaaattgtactaag 542
           |||||||| ||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 200 caaaataactgtctcaacattgtactagctctagtacaaaattgtactaag 150
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>emb|X83518.1|HVKNOX3 H.vulgare Knox3 gene
          Length = 10815

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                   
Query: 489  ttccaaaataaatgtctcaaccttgtactagctctagtataaaattgtactaagc 543
            ||||||||||| ||||||||| |||||||||||||| || ||| |||||||||||
Sbjct: 7212 ttccaaaataagtgtctcaactttgtactagctctactacaaagttgtactaagc 7266
to top
>gb|DQ175992.1| Hordeum vulgare subsp. vulgare clone 65-22A-RB flanking T-DNA
           insertion sequence
          Length = 267

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                       
Query: 474 tttctacttcccctgttccaaaataaatgtctcaaccttgtactagctctagtataaaat 533
           |||||||| || | || ||||||||| ||||| ||| |||| ||||||||||||||||||
Sbjct: 154 tttctactccctccgtcccaaaataattgtcttaactttgttctagctctagtataaaat 95

                     
Query: 534 tgtactaagc 543
           | ||||||||
Sbjct: 94  tatactaagc 85
to top
>dbj|AB024006.1| Hordeum vulgare naat-B and naat-A genes for nicotianamine
            aminotransferase, complete cds
          Length = 10966

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                        
Query: 477  ctacttcccctgttccaaaataaatgtctcaaccttgtactagctctagtataaaattgt 536
            ||||| || |||| ||||||||| ||| ||||| ||||||||| ||||||||||||||||
Sbjct: 9000 ctactccctctgtcccaaaataactgtttcaactttgtactagatctagtataaaattgt 8941

                  
Query: 537  actaag 542
             |||||
Sbjct: 8940 gctaag 8935
to top
>gb|AF509744.1| Hordeum vulgare subsp. vulgare Morex receptor-like kinase gene,
            complete cds
          Length = 4643

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                     
Query: 491  ccaaaataaatgtctcaaccttgtactagctctagtataaa 531
            ||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 2049 ccaaaataattgtctcaactttgtactagctctagtataaa 2089
to top
>emb|AJ249141.1|HVU249141 Hordeum vulgare mRNA for MADS-box protein (m1 gene)
          Length = 1086

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                               
Query: 492 caaaataaatgtctcaaccttgtactagctctagtataaaattgtactaagc 543
           |||||||| ||||||||| ||||| ||||||||||| ||| |||||||||||
Sbjct: 928 caaaataactgtctcaactttgtattagctctagtacaaagttgtactaagc 979
to top
>emb|Z28347.1|HVPLASC1 H.vulgare (NK 1558) gene for plastocyanin
          Length = 1884

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 48/52 (92%), Gaps = 1/52 (1%)
 Strand = Plus / Plus

                                                                
Query: 492  caaaataaatgtctcaaccttgtactagctctagtataaaattgtactaagc 543
            |||||||| ||||||||| ||||||||| | |||||||||||||||||||||
Sbjct: 1832 caaaataagtgtctcaactttgtactagtt-tagtataaaattgtactaagc 1882
to top
>gb|AY821694.1| Crithopsis delileana beta amylase gene, partial cds; and Stowaway
            MITE, complete sequence
          Length = 1521

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                 
Query: 491  ccaaaataaatgtctcaaccttgtactagctctagtataaaattgtactaagc 543
            ||||||||| ||||||||| |||||||| || ||||| ||| |||||||||||
Sbjct: 1214 ccaaaataagtgtctcaactttgtactaactttagtacaaagttgtactaagc 1266
to top
>gb|DQ201146.1| Hordeum vulgare subsp. vulgare cultivar Kompolti korai phytochrome C
            (PhyC) gene, complete cds
          Length = 4914

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                          
Query: 494  aaataaatgtctcaaccttgtactagctctagtataaaattgtact 539
            |||||| ||||||||  |||||||||||||| || |||||||||||
Sbjct: 3964 aaataagtgtctcaattttgtactagctctattacaaaattgtact 4009
to top
>gb|DQ238106.1| Hordeum vulgare subsp. vulgare cv. Morex phytochrome C (PhyC) gene,
            complete cds
          Length = 4938

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                          
Query: 494  aaataaatgtctcaaccttgtactagctctagtataaaattgtact 539
            |||||| ||||||||  |||||||||||||| || |||||||||||
Sbjct: 3964 aaataagtgtctcaattttgtactagctctattacaaaattgtact 4009
to top
>gb|DQ201145.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo phytochrome C (PhyC)
            gene, complete cds
          Length = 4914

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                          
Query: 494  aaataaatgtctcaaccttgtactagctctagtataaaattgtact 539
            |||||| ||||||||  |||||||||||||| || |||||||||||
Sbjct: 3964 aaataagtgtctcaattttgtactagctctattacaaaattgtact 4009
to top
>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness
             locus region
          Length = 129099

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                  
Query: 491   ccaaaataaatgtctcaaccttgtactagctctagta 527
             ||||||||| |||||| || |||||||||||||||||
Sbjct: 31511 ccaaaataagtgtctccactttgtactagctctagta 31475
to top
>ref|XM_360942.1| Magnaporthe grisea 70-15 hypothetical protein (MG03485.4) partial
            mRNA
          Length = 2601

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 267  agagaggtgcgaattcctggcga 289
            |||||||||||||||||||||||
Sbjct: 2368 agagaggtgcgaattcctggcga 2390
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 478     tacttcccctgttccaaaataaa 500
               |||||||||||||||||||||||
Sbjct: 5157122 tacttcccctgttccaaaataaa 5157144
to top
>gb|AC116426.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0058P18, from chromosome 3, complete sequence
          Length = 155037

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 478   tacttcccctgttccaaaataaa 500
             |||||||||||||||||||||||
Sbjct: 12585 tacttcccctgttccaaaataaa 12563
to top
>gb|AC115687.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0091J11, from chromosome 3, complete sequence
          Length = 181163

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 478   tacttcccctgttccaaaataaa 500
             |||||||||||||||||||||||
Sbjct: 99396 tacttcccctgttccaaaataaa 99374
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 478     tacttcccctgttccaaaataaa 500
               |||||||||||||||||||||||
Sbjct: 5156337 tacttcccctgttccaaaataaa 5156359
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 477      ctacttcccctgttccaaaata 498
                ||||||||||||||||||||||
Sbjct: 34927532 ctacttcccctgttccaaaata 34927511
to top
>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence
          Length = 108608

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 493   aaaataaatgtctcaaccttgtacta 518
             ||||||||||||||||| ||||||||
Sbjct: 71166 aaaataaatgtctcaactttgtacta 71141
to top
>dbj|AP004120.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1293_E04
          Length = 118192

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 477   ctacttcccctgttccaaaata 498
             ||||||||||||||||||||||
Sbjct: 87029 ctacttcccctgttccaaaata 87008
to top
>ref|NM_115183.2| Arabidopsis thaliana ATP binding / hydrolase/
            nucleoside-triphosphatase/ nucleotide binding AT3G53230
            mRNA, complete cds
          Length = 2672

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 161  cggaagatgttgatttggaaa 181
            |||||||||||||||||||||
Sbjct: 1225 cggaagatgttgatttggaaa 1245
to top
>gb|AC150004.3| Mus musculus chromosome 7, clone RP24-368P9, complete sequence
          Length = 176113

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 135    agcacatactgaaaagaaaac 155
              |||||||||||||||||||||
Sbjct: 111274 agcacatactgaaaagaaaac 111294
to top
>ref|XM_766049.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_25_38920_35756)
            partial mRNA
          Length = 3165

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 197  aggagtgcaataatctcactg 217
            |||||||||||||||||||||
Sbjct: 2747 aggagtgcaataatctcactg 2727
to top
>emb|X64560.1|HVHSP17A H.vulgare hsp17 gene for 17 kd heat shock protein
          Length = 1515

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                            
Query: 493 aaaataaatgtctcaaccttgtactagctctagtataaaattgtactaa 541
           ||||||| ||||| ||| || ||||| || || ||||||||||||||||
Sbjct: 146 aaaataagtgtctgaactttatactaactttaatataaaattgtactaa 194
to top
>emb|CR931733.2| Medicago truncatula chromosome 5 clone  mth2-38a4, COMPLETE SEQUENCE
          Length = 124746

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 493    aaaataaatgtctcaaccttg 513
              |||||||||||||||||||||
Sbjct: 112109 aaaataaatgtctcaaccttg 112089
to top
>gb|AC011418.5| Homo sapiens chromosome 5 clone CTB-9P16, complete sequence
          Length = 108511

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 90    ttttgtacctttacctggtgc 110
             |||||||||||||||||||||
Sbjct: 63841 ttttgtacctttacctggtgc 63861
to top
>emb|CR954185.2| Medicago truncatula chromosome 5 clone mth4-20m5, COMPLETE SEQUENCE
          Length = 210708

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 493    aaaataaatgtctcaaccttg 513
              |||||||||||||||||||||
Sbjct: 204611 aaaataaatgtctcaaccttg 204631
to top
>gb|AC102628.5| Mus musculus chromosome 7, clone RP23-467K15, complete sequence
          Length = 178563

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 135   agcacatactgaaaagaaaac 155
             |||||||||||||||||||||
Sbjct: 30540 agcacatactgaaaagaaaac 30560
to top
>gb|AC152947.1| Mus musculus 10 BAC RP23-12H20 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 222139

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 379    tcagaacagcaaaggaaaca 398
              ||||||||||||||||||||
Sbjct: 114915 tcagaacagcaaaggaaaca 114934
to top
>gb|AC132371.2| Mus musculus BAC clone RP23-477D20 from chromosome 5, complete sequence
          Length = 193291

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 379   tcagaacagcaaaggaaaca 398
             ||||||||||||||||||||
Sbjct: 53082 tcagaacagcaaaggaaaca 53101
to top
>gb|DQ484014.1| Gymnogyps californianus clone 180G microsatellite sequence
          Length = 730

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 323 ataagataaaactgcagcac 342
           ||||||||||||||||||||
Sbjct: 495 ataagataaaactgcagcac 514
to top
>gb|AY363103.1|AY363102S2 Mus musculus diadenosine triphosphate hydrolase (Fhit) gene, exons 6
              through 10 and partial cds
          Length = 688489

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 312    tgacttgactaataagataa 331
              ||||||||||||||||||||
Sbjct: 154309 tgacttgactaataagataa 154290
to top
>emb|AL122034.29|HSDJ90K10 Human DNA sequence from clone RP1-90K10 on chromosome 6 Contains the
              PPIL1 gene for peptidylprolyl isomerase (cyclophilin)-like
              1 (CYPL1, CGI-124), gene FLJ25357, a novel gene, a novel
              pseudogene, the gene for a novel SCP-like extracellular
              protein, the gene for mitochondrial carrier homolog 1
              (MTCH1) (CGI-64) and two CpG islands, complete sequence
          Length = 133154

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 132    gaaagcacatactgaaaaga 151
              ||||||||||||||||||||
Sbjct: 106144 gaaagcacatactgaaaaga 106125



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 132    gaaagcacatactgaaaaga 151
              ||||||||||||||||||||
Sbjct: 105069 gaaagcacatactgaaaaga 105088
to top
>emb|BX321863.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 8/10
          Length = 286850

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 411    gtcaaagaaatattcagcca 430
              ||||||||||||||||||||
Sbjct: 141781 gtcaaagaaatattcagcca 141762
to top
>dbj|AK162353.1| Mus musculus adult male epididymis cDNA, RIKEN full-length enriched
            library, clone:9230014B14 product:unclassifiable, full
            insert sequence
          Length = 1313

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  acatactgaaaagaaaactc 157
            ||||||||||||||||||||
Sbjct: 1053 acatactgaaaagaaaactc 1034
to top
>dbj|AK165148.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN
           full-length enriched library, clone:E330040D13
           product:unclassifiable, full insert sequence
          Length = 3436

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 138 acatactgaaaagaaaactc 157
           ||||||||||||||||||||
Sbjct: 155 acatactgaaaagaaaactc 136
to top
>ref|XM_394969.2| PREDICTED: Apis mellifera similar to ATPase family, AAA domain
            containing 2 (LOC411496), mRNA
          Length = 4889

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 16   gttattggagctacgaacagaattgatg 43
            |||||||||||||| |||||||| ||||
Sbjct: 3207 gttattggagctacaaacagaatagatg 3234
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 173     atttggaaacaattgcacgt 192
               ||||||||||||||||||||
Sbjct: 5008306 atttggaaacaattgcacgt 5008325
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     aacagaattgatgttataga 50
              ||||||||||||||||||||
Sbjct: 429556 aacagaattgatgttataga 429575
to top
>gb|AC114802.5| Homo sapiens BAC clone RP11-790N8 from 2, complete sequence
          Length = 154814

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    atactgaaaagaaaactctc 159
              ||||||||||||||||||||
Sbjct: 138694 atactgaaaagaaaactctc 138713
to top
>gb|AC129600.4| Mus musculus BAC clone RP23-361D7 from chromosome 5, complete sequence
          Length = 223491

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 138    acatactgaaaagaaaactc 157
              ||||||||||||||||||||
Sbjct: 216738 acatactgaaaagaaaactc 216757
to top
>gb|AC106715.5| Homo sapiens 3 BAC RP11-695J20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 150222

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     acattttgtacctttacctg 106
              ||||||||||||||||||||
Sbjct: 136148 acattttgtacctttacctg 136129
to top
>dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0603C10
          Length = 187620

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 478    tacttcccctgttccaaaataaat 501
              ||||||| ||||||||||||||||
Sbjct: 148726 tacttcctctgttccaaaataaat 148703
to top
>dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0007D08
          Length = 183142

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    aacagaattgatgttataga 50
             ||||||||||||||||||||
Sbjct: 19516 aacagaattgatgttataga 19535
to top
>dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0450B04
          Length = 153268

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     aacagaattgatgttataga 50
              ||||||||||||||||||||
Sbjct: 139070 aacagaattgatgttataga 139089
to top
>gb|AC149285.5| Mus musculus BAC clone RP23-139J2 from 5, complete sequence
          Length = 201978

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 138    acatactgaaaagaaaactc 157
              ||||||||||||||||||||
Sbjct: 103894 acatactgaaaagaaaactc 103913
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 173     atttggaaacaattgcacgt 192
               ||||||||||||||||||||
Sbjct: 5008288 atttggaaacaattgcacgt 5008307
to top
>emb|AL831811.5|CNS08CAO Oryza sativa chromosome 12, . BAC OJ1561_A05 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 91053

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   atttggaaacaattgcacgt 192
             ||||||||||||||||||||
Sbjct: 51680 atttggaaacaattgcacgt 51699
to top
>gb|AC144631.3| Mus musculus BAC clone RP23-112C14 from 3, complete sequence
          Length = 179548

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 512   tgtactagctctagtataaa 531
             ||||||||||||||||||||
Sbjct: 56434 tgtactagctctagtataaa 56415
to top
>emb|AL589696.10| Mouse DNA sequence from clone RP23-454M13 on chromosome 15, complete
            sequence
          Length = 207431

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 312  tgacttgactaataagataa 331
            ||||||||||||||||||||
Sbjct: 6203 tgacttgactaataagataa 6222


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,627,329
Number of Sequences: 3902068
Number of extensions: 5627329
Number of successful extensions: 135359
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134951
Number of HSP's gapped (non-prelim): 408
length of query: 566
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 543
effective length of database: 17,143,297,704
effective search space: 9308810653272
effective search space used: 9308810653272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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