ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6d24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK104938.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 7e-22
2dbj|AK067218.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 7e-22
3gb|AC157500.1| Oryza sativa (japonica cultivar-group) BAC clone ... 113 7e-22
4gb|AY107639.1| Zea mays PCO092697 mRNA sequence 101 3e-18
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
6dbj|AP005883.3| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
7gb|AC151529.20| Medicago truncatula clone mth2-7n23, complete se... 60 9e-06
8ref|XM_790484.1| PREDICTED: Strongylocentrotus purpuratus simila... 46 0.14
9emb|AL121612.5|CNS01DS1 Human chromosome 14 DNA sequence BAC R-1... 46 0.14
10dbj|AP004782.3| Homo sapiens genomic DNA, chromosome 11 clone:CM... 46 0.14
11gb|AC119857.10| Mus musculus chromosome 3, clone RP23-257A18, co... 44 0.54
12gb|AC164002.4| Mus musculus chromosome 3, clone RP24-114A9, comp... 44 0.54
13gb|AC153384.4| Mus musculus 6 BAC RP23-388D3 (Roswell Park Cance... 44 0.54
14emb|AL590991.14| Mouse DNA sequence from clone RP23-255N16 on ch... 44 0.54
15ref|XM_656258.1| Aspergillus nidulans FGSC A4 hypothetical prote... 42 2.1
16gb|AC164306.3| Mus musculus BAC clone RP23-190A21 from chromosom... 42 2.1
17ref|XM_754347.1| Ustilago maydis 521 hypothetical protein (UM032... 42 2.1
18emb|AL161622.12| Human DNA sequence from clone RP3-402H5 on chro... 42 2.1
19emb|AL031287.3|HS703H14 Human DNA sequence from clone RP4-703H14... 42 2.1
20gb|AC008608.7| Homo sapiens chromosome 5 clone CTB-113I20, compl... 42 2.1
21emb|AL840635.6| Mouse DNA sequence from clone RP23-418D21 on chr... 42 2.1
22gb|AC131921.9| Mus musculus chromosome 12, clone RP24-231P11, co... 40 8.5
23ref|XM_455356.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F06094g ... 40 8.5
24gb|AC144401.2| Didelphis virginiana clone LBNL3-270H19, complete... 40 8.5
25gb|AC099863.14| Mus musculus chromosome 3, clone RP23-6F2, compl... 40 8.5
26gb|AC083948.3| Mus musculus strain C57BL6/J chromosome 5 clone R... 40 8.5
27gb|AC123957.4| Mus musculus BAC clone RP23-302N2 from 12, comple... 40 8.5
28gb|AC112270.3| Mus musculus BAC clone RP24-117A22 from 5, comple... 40 8.5
29gb|AC110784.3| Homo sapiens BAC clone RP11-417D8 from 7, complet... 40 8.5
30gb|AC138171.17| Medicago truncatula clone mth2-7f10, complete se... 40 8.5
31gb|AC107638.17| Mus musculus, clone RP23-44D14, complete sequence 40 8.5
32emb|AL450428.6| Human DNA sequence from clone RP11-264J11 on chr... 40 8.5
33gb|DQ450514.1| Brevipalpus phoenicis haplotype P13 cytochrome ox... 40 8.5
34emb|AL133269.17| Human DNA sequence from clone RP3-468K3 on chro... 40 8.5
35emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 8.5
36gb|AC118273.4| Homo sapiens chromosome 11, clone RP11-107P7, com... 40 8.5
37gb|AC162794.4| Mus musculus chromosome 3, clone RP24-120B22, com... 40 8.5
38emb|BX571868.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 40 8.5
39emb|BX640496.10| Mouse DNA sequence from clone RP23-379O23 on ch... 40 8.5
40emb|AL844589.3| Mouse DNA sequence from clone RP23-139C9 on chro... 40 8.5
41emb|CR857271.1| Pongo pygmaeus mRNA; cDNA DKFZp469P1321 (from cl... 40 8.5
42gb|AC117746.6| Homo sapiens chromosome 11, clone RP11-159C12, co... 40 8.5
43gb|AC182841.2| Pan troglodytes BAC clone CH251-667I24 from chrom... 40 8.5
44gb|AC005885.1| Homo sapiens 12q24.2 PAC RPCI5-1135M4 (Roswell Pa... 40 8.5
45gb|AY320019.1| Brevipalpus phoenicis isolate Brevph17 cytochrome... 40 8.5
46gb|AC150313.7| Mus musculus BAC clone RP23-436A18 from chromosom... 40 8.5
47dbj|AK029225.1| Mus musculus 0 day neonate head cDNA, RIKEN full... 40 8.5
48gb|AC155839.4| Mus musculus 6 BAC RP24-96J4 (Roswell Park Cancer... 40 8.5
49gb|AC138744.4| Homo sapiens chromosome 17, clone RP11-859E19, co... 40 8.5
50gb|AC016489.18| Homo sapiens chromosome 17, clone RP11-329L6, co... 40 8.5
51dbj|AP000366.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
52gb|AC129531.8| Homo sapiens chromosome 17, clone RP11-188B1, com... 40 8.5
53emb|AL136297.3|CNS01DW1 Human chromosome 14 DNA sequence BAC R-6... 40 8.5
54gb|AF007544.1|AF007544 Homo sapiens prostate-specific membrane a... 40 8.5
55dbj|AP003122.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 8.5
56gb|AC116720.16| Mus musculus chromosome 3, clone RP23-223N19, co... 40 8.5
57gb|AC174598.2| Mus musculus BAC clone RP24-234D9 from chromosome... 40 8.5
58emb|AL356802.5|CNS05TDK Human chromosome 14 DNA sequence BAC C-2... 40 8.5
59gb|M90639.1|CRECPCABPA Chlamydomonas eugametos chlorophyll a-bin... 40 8.5 
>dbj|AK104938.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-C05, full
           insert sequence
          Length = 575

 Score =  113 bits (57), Expect = 7e-22
 Identities = 90/101 (89%)
 Strand = Plus / Plus

                                                                       
Query: 22  aaagctgtgaagagaaaggcaaactttgaagagagcaagaaatttaaagaaaggttgcag 81
           |||||| |||||||||||||||||||||||||||||||||| || ||||||  ||||| |
Sbjct: 304 aaagctttgaagagaaaggcaaactttgaagagagcaagaagttcaaagaacagttgctg 363

                                                    
Query: 82  gcttataaaaaggaaatggctgagaaagaaaatgaatcata 122
           || ||||||||||||||||||||  |||| || ||||||||
Sbjct: 364 gcctataaaaaggaaatggctgaacaagacaaggaatcata 404
to top
>dbj|AK067218.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098J23, full
           insert sequence
          Length = 2420

 Score =  113 bits (57), Expect = 7e-22
 Identities = 90/101 (89%)
 Strand = Plus / Plus

                                                                       
Query: 22  aaagctgtgaagagaaaggcaaactttgaagagagcaagaaatttaaagaaaggttgcag 81
           |||||| |||||||||||||||||||||||||||||||||| || ||||||  ||||| |
Sbjct: 281 aaagctttgaagagaaaggcaaactttgaagagagcaagaagttcaaagaacagttgctg 340

                                                    
Query: 82  gcttataaaaaggaaatggctgagaaagaaaatgaatcata 122
           || ||||||||||||||||||||  |||| || ||||||||
Sbjct: 341 gcctataaaaaggaaatggctgaacaagacaaggaatcata 381
to top
>gb|AC157500.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0056O04, from
            chromosome 4, complete sequence
          Length = 90825

 Score =  113 bits (57), Expect = 7e-22
 Identities = 90/101 (89%)
 Strand = Plus / Minus

                                                                        
Query: 22   aaagctgtgaagagaaaggcaaactttgaagagagcaagaaatttaaagaaaggttgcag 81
            |||||| |||||||||||||||||||||||||||||||||| || ||||||  ||||| |
Sbjct: 7730 aaagctttgaagagaaaggcaaactttgaagagagcaagaagttcaaagaacagttgctg 7671

                                                     
Query: 82   gcttataaaaaggaaatggctgagaaagaaaatgaatcata 122
            || ||||||||||||||||||||  |||| || ||||||||
Sbjct: 7670 gcctataaaaaggaaatggctgaacaagacaaggaatcata 7630
to top
>gb|AY107639.1| Zea mays PCO092697 mRNA sequence
          Length = 656

 Score =  101 bits (51), Expect = 3e-18
 Identities = 78/87 (89%)
 Strand = Plus / Plus

                                                                       
Query: 22  aaagctgtgaagagaaaggcaaactttgaagagagcaagaaatttaaagaaaggttgcag 81
           |||||| ||||||||||||||||||||||||||||||||| ||||||||||  |||| ||
Sbjct: 419 aaagctttgaagagaaaggcaaactttgaagagagcaagagatttaaagaacagttgaag 478

                                      
Query: 82  gcttataaaaaggaaatggctgagaaa 108
           ||||| |||| |||||| || ||||||
Sbjct: 479 gcttacaaaagggaaattgcagagaaa 505
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                   
Query: 22       aaagctgtgaagagaaaggcaaactttgaagagagcaagaaatttaaagaa 72
                |||||| ||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct: 21254401 aaagctttgaagaggaaggctaacttcgaagagagcaagaaattcaaagaa 21254351



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 373     actgtaaaaacttatgtatgaaat 396
               ||||||||||||||||||| ||||
Sbjct: 5271888 actgtaaaaacttatgtatcaaat 5271865
to top
>dbj|AP005883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0435E12
          Length = 143188

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                
Query: 22    aaagctgtgaagagaaaggcaaactttgaagagagcaagaaatttaaagaa 72
             |||||| ||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct: 36936 aaagctttgaagaggaaggctaacttcgaagagagcaagaaattcaaagaa 36886
to top
>gb|AC151529.20| Medicago truncatula clone mth2-7n23, complete sequence
          Length = 134908

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                    
Query: 22     aaagctgtgaagagaaaggcaaactttgaagagagcaa 59
              |||||||||||||||||||| ||||||||| |||||||
Sbjct: 128914 aaagctgtgaagagaaaggccaactttgaaaagagcaa 128951
to top
>ref|XM_790484.1| PREDICTED: Strongylocentrotus purpuratus similar to exportin 1,
           CRM1 homolog (LOC590897), partial mRNA
          Length = 609

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 91  aaggaaatggctgagaaagaaaa 113
           |||||||||||||||||||||||
Sbjct: 232 aaggaaatggctgagaaagaaaa 254
to top
>emb|AL121612.5|CNS01DS1 Human chromosome 14 DNA sequence BAC R-179A9 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 180914

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 326    atttccatcatatatagacaataagtc 352
              |||||||||||||| ||||||||||||
Sbjct: 136131 atttccatcatatagagacaataagtc 136157
to top
>dbj|AP004782.3| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-103B16, complete
             sequence
          Length = 119191

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 515   taaattacattgctatgacctag 537
             |||||||||||||||||||||||
Sbjct: 39866 taaattacattgctatgacctag 39888
to top
>gb|AC119857.10| Mus musculus chromosome 3, clone RP23-257A18, complete sequence
          Length = 152106

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 94     gaaatggctgagaaagaaaatg 115
              ||||||||||||||||||||||
Sbjct: 126267 gaaatggctgagaaagaaaatg 126288
to top
>gb|AC164002.4| Mus musculus chromosome 3, clone RP24-114A9, complete sequence
          Length = 198340

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 94     gaaatggctgagaaagaaaatg 115
              ||||||||||||||||||||||
Sbjct: 138795 gaaatggctgagaaagaaaatg 138774
to top
>gb|AC153384.4| Mus musculus 6 BAC RP23-388D3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 203979

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 317    ggttagtccatttccatcatat 338
              ||||||||||||||||||||||
Sbjct: 180518 ggttagtccatttccatcatat 180497
to top
>emb|AL590991.14| Mouse DNA sequence from clone RP23-255N16 on chromosome 11, complete
             sequence
          Length = 194872

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 460   attaacttattatatgtatatg 481
             ||||||||||||||||||||||
Sbjct: 97169 attaacttattatatgtatatg 97190
to top
>ref|XM_656258.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3746.2), mRNA
          Length = 1878

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 89   aaaaggaaatggctgagaaagaaaa 113
            |||||||||||| ||||||||||||
Sbjct: 1643 aaaaggaaatggatgagaaagaaaa 1667
to top
>gb|AC164306.3| Mus musculus BAC clone RP23-190A21 from chromosome 17, complete
            sequence
          Length = 206180

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 24   agctgtgaagagaaaggcaaa 44
            |||||||||||||||||||||
Sbjct: 7136 agctgtgaagagaaaggcaaa 7116
to top
>ref|XM_754347.1| Ustilago maydis 521 hypothetical protein (UM03293.1) partial mRNA
          Length = 4521

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 89  aaaaggaaatggctgagaaag 109
           |||||||||||||||||||||
Sbjct: 617 aaaaggaaatggctgagaaag 637
to top
>emb|AL161622.12| Human DNA sequence from clone RP3-402H5 on chromosome 6p12.3-21.1
             Contains the 3' end of a gene for a  novel protein similar
             to seven transmembrane receptor (Rhodopsin family),
             complete sequence
          Length = 131967

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 93    ggaaatggctgagaaagaaaa 113
             |||||||||||||||||||||
Sbjct: 55520 ggaaatggctgagaaagaaaa 55540
to top
>emb|AL031287.3|HS703H14 Human DNA sequence from clone RP4-703H14 on chromosome 1q23.2-24.3
             Contains part of a novel gene, complete sequence
          Length = 74729

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 501   aaattactggtcattaaatta 521
             |||||||||||||||||||||
Sbjct: 67442 aaattactggtcattaaatta 67422
to top
>gb|AC008608.7| Homo sapiens chromosome 5 clone CTB-113I20, complete sequence
          Length = 160672

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 27    tgtgaagagaaaggcaaactt 47
             |||||||||||||||||||||
Sbjct: 90379 tgtgaagagaaaggcaaactt 90359
to top
>emb|AL840635.6| Mouse DNA sequence from clone RP23-418D21 on chromosome 2, complete
             sequence
          Length = 201328

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 486   atcttgtaaggtaggaaattactgg 510
             |||| ||||||||||||||||||||
Sbjct: 66040 atctagtaaggtaggaaattactgg 66064
to top
>gb|AC131921.9| Mus musculus chromosome 12, clone RP24-231P11, complete sequence
          Length = 163117

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 317   ggttagtccatttccatcat 336
             ||||||||||||||||||||
Sbjct: 12567 ggttagtccatttccatcat 12586
to top
>ref|XM_455356.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F06094g predicted mRNA
          Length = 1080

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 89   aaaaggaaatggctgagaaa 108
            ||||||||||||||||||||
Sbjct: 1019 aaaaggaaatggctgagaaa 1038
to top
>gb|AC144401.2| Didelphis virginiana clone LBNL3-270H19, complete sequence
          Length = 180378

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    gagaaagaaaatgaatcata 122
              ||||||||||||||||||||
Sbjct: 124739 gagaaagaaaatgaatcata 124720
to top
>gb|AC099863.14| Mus musculus chromosome 3, clone RP23-6F2, complete sequence
          Length = 245784

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    tgaagagagcaagaaattta 67
             ||||||||||||||||||||
Sbjct: 21830 tgaagagagcaagaaattta 21811
to top
>gb|AC083948.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-67P7, complete
             sequence
          Length = 214125

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 286   catatttccttctgtggctg 305
             ||||||||||||||||||||
Sbjct: 94910 catatttccttctgtggctg 94929
to top
>gb|AC123957.4| Mus musculus BAC clone RP23-302N2 from 12, complete sequence
          Length = 206661

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 513   attaaattacattgctatga 532
             ||||||||||||||||||||
Sbjct: 39267 attaaattacattgctatga 39248
to top
>gb|AC112270.3| Mus musculus BAC clone RP24-117A22 from 5, complete sequence
          Length = 180594

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 169    aatcctgcggcttcaacttt 188
              ||||||||||||||||||||
Sbjct: 117013 aatcctgcggcttcaacttt 116994
to top
>gb|AC110784.3| Homo sapiens BAC clone RP11-417D8 from 7, complete sequence
          Length = 38891

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    gaagagaaaggcaaactttg 49
             ||||||||||||||||||||
Sbjct: 20979 gaagagaaaggcaaactttg 20960
to top
>gb|AC138171.17| Medicago truncatula clone mth2-7f10, complete sequence
          Length = 104336

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 40    gcaaactttgaagagagcaagaaa 63
             |||||||||||||| |||||||||
Sbjct: 16133 gcaaactttgaagacagcaagaaa 16110
to top
>gb|AC107638.17| Mus musculus, clone RP23-44D14, complete sequence
          Length = 231286

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 377    taaaaacttatgtatgaaat 396
              ||||||||||||||||||||
Sbjct: 181036 taaaaacttatgtatgaaat 181017
to top
>emb|AL450428.6| Human DNA sequence from clone RP11-264J11 on chromosome 9, complete
             sequence
          Length = 84808

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   cttttctttacttcatgttt 226
             ||||||||||||||||||||
Sbjct: 78104 cttttctttacttcatgttt 78123
to top
>gb|DQ450514.1| Brevipalpus phoenicis haplotype P13 cytochrome oxidase subunit 1
           gene, partial cds; mitochondrial
          Length = 410

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 269 taatctatttagaagttcatattt 292
           |||| |||||||||||||||||||
Sbjct: 266 taatttatttagaagttcatattt 289
to top
>emb|AL133269.17| Human DNA sequence from clone RP3-468K3 on chromosome 6q25-26 Contains
             a beta tubulin pseudogene, complete sequence
          Length = 90687

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 459   aattaacttattatatgtatatgc 482
             ||||||||||||| ||||||||||
Sbjct: 20194 aattaacttattagatgtatatgc 20171
to top
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 2602197

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 89     aaaaggaaatggctgagaaa 108
              ||||||||||||||||||||
Sbjct: 590359 aaaaggaaatggctgagaaa 590340
to top
>gb|AC118273.4| Homo sapiens chromosome 11, clone RP11-107P7, complete sequence
          Length = 187529

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 99     ggctgagaaagaaaatgaat 118
              ||||||||||||||||||||
Sbjct: 122556 ggctgagaaagaaaatgaat 122575
to top
>gb|AC162794.4| Mus musculus chromosome 3, clone RP24-120B22, complete sequence
          Length = 139773

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    tgaagagagcaagaaattta 67
             ||||||||||||||||||||
Sbjct: 56541 tgaagagagcaagaaattta 56560
to top
>emb|BX571868.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              10/17
          Length = 345829

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 159    tttttgctgcaatcctgcgg 178
              ||||||||||||||||||||
Sbjct: 279717 tttttgctgcaatcctgcgg 279698
to top
>emb|BX640496.10| Mouse DNA sequence from clone RP23-379O23 on chromosome 4, complete
              sequence
          Length = 172320

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 540    atggccagttggaaactttc 559
              ||||||||||||||||||||
Sbjct: 129053 atggccagttggaaactttc 129072
to top
>emb|AL844589.3| Mouse DNA sequence from clone RP23-139C9 on chromosome 4, complete
             sequence
          Length = 162642

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 363   ctggtgttgtactgtaaaaa 382
             ||||||||||||||||||||
Sbjct: 71390 ctggtgttgtactgtaaaaa 71371
to top
>emb|CR857271.1| Pongo pygmaeus mRNA; cDNA DKFZp469P1321 (from clone DKFZp469P1321)
          Length = 3269

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 206  acttttctttacttcatgtt 225
            ||||||||||||||||||||
Sbjct: 3020 acttttctttacttcatgtt 3039
to top
>gb|AC117746.6| Homo sapiens chromosome 11, clone RP11-159C12, complete sequence
          Length = 157527

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    ggctgagaaagaaaatgaat 118
             ||||||||||||||||||||
Sbjct: 44359 ggctgagaaagaaaatgaat 44340
to top
>gb|AC182841.2| Pan troglodytes BAC clone CH251-667I24 from chromosome 11, complete
              sequence
          Length = 189657

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 99     ggctgagaaagaaaatgaat 118
              ||||||||||||||||||||
Sbjct: 115646 ggctgagaaagaaaatgaat 115627
to top
>gb|AC005885.1| Homo sapiens 12q24.2 PAC RPCI5-1135M4 (Roswell Park Cancer Institute
             Human PAC Library) complete sequence
          Length = 84780

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    agagagcaagaaatttaaag 70
             ||||||||||||||||||||
Sbjct: 44605 agagagcaagaaatttaaag 44624
to top
>gb|AY320019.1| Brevipalpus phoenicis isolate Brevph17 cytochrome oxidase subunit I
           (COI) gene, partial cds; mitochondrial gene for
           mitochondrial product
          Length = 374

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 269 taatctatttagaagttcatattt 292
           |||| |||||||||||||||||||
Sbjct: 282 taatttatttagaagttcatattt 305
to top
>gb|AC150313.7| Mus musculus BAC clone RP23-436A18 from chromosome 7, complete sequence
          Length = 204095

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 377   taaaaacttatgtatgaaat 396
             ||||||||||||||||||||
Sbjct: 32534 taaaaacttatgtatgaaat 32515
to top
>dbj|AK029225.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched
           library, clone:4831430G22 product:unclassifiable, full
           insert sequence
          Length = 3465

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 286 catatttccttctgtggctg 305
           ||||||||||||||||||||
Sbjct: 123 catatttccttctgtggctg 142
to top
>gb|AC155839.4| Mus musculus 6 BAC RP24-96J4 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 173368

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 390   atgaaatcttcacaactatgaaac 413
             ||||||| ||||||||||||||||
Sbjct: 76978 atgaaattttcacaactatgaaac 77001
to top
>gb|AC138744.4| Homo sapiens chromosome 17, clone RP11-859E19, complete sequence
          Length = 177325

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 92   aggaaatggctgagaaagaa 111
            ||||||||||||||||||||
Sbjct: 3134 aggaaatggctgagaaagaa 3115
to top
>gb|AC016489.18| Homo sapiens chromosome 17, clone RP11-329L6, complete sequence
          Length = 179219

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 92     aggaaatggctgagaaagaa 111
              ||||||||||||||||||||
Sbjct: 178558 aggaaatggctgagaaagaa 178539
to top
>dbj|AP000366.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0437H03
          Length = 170173

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 373    actgtaaaaacttatgtatgaaat 396
              ||||||||||||||||||| ||||
Sbjct: 165341 actgtaaaaacttatgtatcaaat 165318
to top
>gb|AC129531.8| Homo sapiens chromosome 17, clone RP11-188B1, complete sequence
          Length = 164068

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 92     aggaaatggctgagaaagaa 111
              ||||||||||||||||||||
Sbjct: 129076 aggaaatggctgagaaagaa 129057
to top
>emb|AL136297.3|CNS01DW1 Human chromosome 14 DNA sequence BAC R-60K23 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 163918

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    aggaaatggctgagaaagaa 111
             ||||||||||||||||||||
Sbjct: 46342 aggaaatggctgagaaagaa 46323
to top
>gb|AF007544.1|AF007544 Homo sapiens prostate-specific membrane antigen (PSM) gene, complete
             cds
          Length = 93525

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    ggctgagaaagaaaatgaat 118
             ||||||||||||||||||||
Sbjct: 62424 ggctgagaaagaaaatgaat 62405
to top
>dbj|AP003122.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-313I2, complete
             sequence
          Length = 137888

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    ggctgagaaagaaaatgaat 118
             ||||||||||||||||||||
Sbjct: 48466 ggctgagaaagaaaatgaat 48447
to top
>gb|AC116720.16| Mus musculus chromosome 3, clone RP23-223N19, complete sequence
          Length = 203748

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    aaatggctgagaaagaaaat 114
             ||||||||||||||||||||
Sbjct: 54875 aaatggctgagaaagaaaat 54894
to top
>gb|AC174598.2| Mus musculus BAC clone RP24-234D9 from chromosome 12, complete sequence
          Length = 199237

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 317    ggttagtccatttccatcat 336
              ||||||||||||||||||||
Sbjct: 154286 ggttagtccatttccatcat 154305
to top
>emb|AL356802.5|CNS05TDK Human chromosome 14 DNA sequence BAC C-2137E9 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 137883

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    aggaaatggctgagaaagaa 111
             ||||||||||||||||||||
Sbjct: 36063 aggaaatggctgagaaagaa 36082
to top
>gb|M90639.1|CRECPCABPA Chlamydomonas eugametos chlorophyll a-binding protein (psbC) gene,
           complete cds
          Length = 3230

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 gttataagattacagctgag 262
           ||||||||||||||||||||
Sbjct: 813 gttataagattacagctgag 794


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8,267,437
Number of Sequences: 3902068
Number of extensions: 8267437
Number of successful extensions: 220823
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 220533
Number of HSP's gapped (non-prelim): 290
length of query: 621
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 598
effective length of database: 17,143,297,704
effective search space: 10251692026992
effective search space used: 10251692026992
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top