ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags5o24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC130604.4| Oryza sativa (japonica cultivar-group) chromosome... 42 0.054
2gb|AC132485.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.054
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.054
4dbj|AK100825.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.054
5dbj|AK058234.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.054

>gb|AC130604.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1155G07,
              complete sequence
          Length = 146712

 Score = 42.1 bits (21), Expect = 0.054
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                                 
Query: 1      gcttacagcnaaaggctaacttcttntgatgctga 35
              ||||| ||| ||||||||||||| | |||||||||
Sbjct: 145304 gcttatagcaaaaggctaacttcctctgatgctga 145270



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>gb|AC132485.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0022D06,
             complete sequence
          Length = 142068

 Score = 42.1 bits (21), Expect = 0.054
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                                
Query: 1     gcttacagcnaaaggctaacttcttntgatgctga 35
             ||||| ||| ||||||||||||| | |||||||||
Sbjct: 17067 gcttatagcaaaaggctaacttcctctgatgctga 17033



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 0.054
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                                   
Query: 1        gcttacagcnaaaggctaacttcttntgatgctga 35
                ||||| ||| ||||||||||||| | |||||||||
Sbjct: 25282463 gcttatagcaaaaggctaacttcctctgatgctga 25282429



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>dbj|AK100825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023122K10, full
           insert sequence
          Length = 937

 Score = 42.1 bits (21), Expect = 0.054
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 1   gcttacagcnaaaggctaacttcttntgatgctga 35
           ||||| ||| ||||||||||||| | |||||||||
Sbjct: 320 gcttatagcaaaaggctaacttcctctgatgctga 354



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>dbj|AK058234.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-C09, full
           insert sequence
          Length = 912

 Score = 42.1 bits (21), Expect = 0.054
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 1   gcttacagcnaaaggctaacttcttntgatgctga 35
           ||||| ||| ||||||||||||| | |||||||||
Sbjct: 295 gcttatagcaaaaggctaacttcctctgatgctga 329


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,898
Number of Sequences: 3902068
Number of extensions: 26898
Number of successful extensions: 6789
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6781
Number of HSP's gapped (non-prelim): 8
length of query: 35
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 15
effective length of database: 17,155,003,908
effective search space: 257325058620
effective search space used: 257325058620
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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