ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags6d22 |
|---|---|
| Clone Library Name | barley_pub |
>VATH_ARATH (Q9LX65) Probable vacuolar ATP synthase subunit H (EC 3.6.3.14)| (V-ATPase H subunit) (Vacuolar proton pump H subunit) (Vacuolar proton pump subunit SFD) Length = 441 Score = 177 bits (449), Expect = 9e-45 Identities = 87/138 (63%), Positives = 105/138 (76%) Frame = +2 Query: 8 LLDEDGPSYVHVFLNILRSISKEETXEYVLALIDEMLAANPKRAALFYDKSLSGEDIYDP 187 LLDEDGP+YVH+F++ILR I KEET EYVLALI EML+ANP RA LF+D+SL+ ED Y+P Sbjct: 49 LLDEDGPAYVHLFVSILRDIFKEETVEYVLALIYEMLSANPTRARLFHDESLANEDTYEP 108 Query: 188 FLRLLLKGXWFVQEKSCKILTHLISARPKLXNGMVPNGEASNSKSKLTSIHDVLKGLVDW 367 FLRLL KG WF+QEKSCKIL +ISARPK N ++ NG I DVLKGLV+W Sbjct: 109 FLRLLWKGNWFIQEKSCKILAWIISARPKAGNAVIGNG-----------IDDVLKGLVEW 157 Query: 368 LCSQLRNPTHPNXSIPTA 421 LC+QL+ P+HP +P A Sbjct: 158 LCAQLKQPSHPTRGVPIA 175
>VATH_MANSE (Q9U5N0) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (Vacuolar proton pump subunit SFD) Length = 475 Score = 62.4 bits (150), Expect = 4e-10 Identities = 34/90 (37%), Positives = 54/90 (60%) Frame = +2 Query: 8 LLDEDGPSYVHVFLNILRSISKEETXEYVLALIDEMLAANPKRAALFYDKSLSGEDIYDP 187 L D++ + VFLN+L ISK+ T +Y+L LID++L+ + R +F + SG +I+ P Sbjct: 72 LPDKNPDACADVFLNLLTHISKDHTIQYILVLIDDILSEDKSRVKIFRETKYSG-NIWQP 130 Query: 188 FLRLLLKGXWFVQEKSCKILTHLISARPKL 277 FL LL + FVQ + +I+ L P+L Sbjct: 131 FLNLLNRQDEFVQHMTARIIAKLACWHPQL 160
>VATH_MOUSE (Q8BVE3) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) Length = 483 Score = 53.1 bits (126), Expect = 3e-07 Identities = 31/110 (28%), Positives = 59/110 (53%), Gaps = 1/110 (0%) Frame = +2 Query: 8 LLDEDGPSYVHVFLNILRSISKEETXEYVLALIDEMLAANPKRAALFYDKSLSGEDIYDP 187 +L +G F+N++ ISKE+T +Y+L ++D+ML N +R ++F+D + + P Sbjct: 65 MLQTEGSQCAKTFINLMTHISKEQTVQYILTMVDDMLQENHQRVSIFFDYAKRSKSTAWP 124 Query: 188 -FLRLLLKGXWFVQEKSCKILTHLISARPKLXNGMVPNGEASNSKSKLTS 334 FL +L + F + +I+ L + +L G N + K++L+S Sbjct: 125 YFLPMLNRQDPFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWIKTQLSS 174
>VATH_BOVIN (O46563) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 50/57 kDa subunits) (Vacuolar proton pump subunit SFD) Length = 483 Score = 52.0 bits (123), Expect = 6e-07 Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 1/110 (0%) Frame = +2 Query: 8 LLDEDGPSYVHVFLNILRSISKEETXEYVLALIDEMLAANPKRAALFYD-KSLSGEDIYD 184 +L +G F+N++ ISKE+T +Y+L L+D+ L N +R ++F+D S + Sbjct: 65 MLQTEGSQRAKTFINLMTHISKEQTVQYILTLVDDTLQENHQRVSIFFDYAKRSKNTAWS 124 Query: 185 PFLRLLLKGXWFVQEKSCKILTHLISARPKLXNGMVPNGEASNSKSKLTS 334 FL +L + F + +I+ L + +L G N + K++L+S Sbjct: 125 YFLPMLNRQDLFTVHMTARIIAKLAAWGKELMEGSDLNYYFNWIKTQLSS 174
>VATH_HUMAN (Q9UI12) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 50/57 kDa subunits) (Vacuolar proton pump subunit SFD) (VMA13) (Nef-binding protein 1) (NBP1) Length = 483 Score = 51.6 bits (122), Expect = 8e-07 Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 1/110 (0%) Frame = +2 Query: 8 LLDEDGPSYVHVFLNILRSISKEETXEYVLALIDEMLAANPKRAALFYDKSLSGEDIYDP 187 +L +G F+N++ I KE+T +Y+L ++D+ML N +R ++F+D + ++ P Sbjct: 65 MLQTEGSQCAKTFINLMTHICKEQTVQYILTMVDDMLQENHQRVSIFFDYARCSKNTAWP 124 Query: 188 -FLRLLLKGXWFVQEKSCKILTHLISARPKLXNGMVPNGEASNSKSKLTS 334 FL +L + F + +I+ L + +L G N + K++L+S Sbjct: 125 YFLPMLNRQDPFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWIKTQLSS 174
>VATH_PIG (Q9TVC1) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (V-ATPase 50/57 kDa subunits) (Vacuolar proton pump subunit SFD) Length = 483 Score = 50.8 bits (120), Expect = 1e-06 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 1/110 (0%) Frame = +2 Query: 8 LLDEDGPSYVHVFLNILRSISKEETXEYVLALIDEMLAANPKRAALFYD-KSLSGEDIYD 184 +L +G F+N++ ISKE+T +Y+L ++D+ L N +R ++F+D S + Sbjct: 65 MLQTEGSQCAKTFINLMTHISKEQTVQYILTMVDDTLQENHQRVSIFFDYAKRSKNTAWS 124 Query: 185 PFLRLLLKGXWFVQEKSCKILTHLISARPKLXNGMVPNGEASNSKSKLTS 334 FL +L + F + +I+ L + +L G N + K++L S Sbjct: 125 YFLPMLNRQDLFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWIKTQLAS 174
>VATH_DROME (Q9V3J1) Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H| subunit) (Vacuolar proton pump H subunit) (Vacuolar proton pump subunit SFD) Length = 468 Score = 47.8 bits (112), Expect = 1e-05 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Frame = +2 Query: 11 LDEDGPSYVHVFLNILRSISKEETXEYVLALIDEMLAANPKRAALFYDKS-LSGEDIYDP 187 L ++ V LN++ +SK+ T +Y+L L+D++L + R LF+D + + I+ P Sbjct: 63 LAQNSSQVVKTLLNLVSHLSKDSTIQYILVLLDDLLQEDRSRVDLFHDTAGKLKQCIWGP 122 Query: 188 FLRLLLKGXWFVQEKSCKIL 247 FL LL + F+ S +IL Sbjct: 123 FLNLLNRQDGFIVNMSSRIL 142
>VATH1_CAEEL (Q20666) Probable vacuolar ATP synthase subunit H 1 (EC 3.6.3.14)| (V-ATPase H subunit 1) (Vacuolar proton pump H subunit 1) (Vacuolar proton pump subunit SFD 1) Length = 451 Score = 37.0 bits (84), Expect = 0.020 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Frame = +2 Query: 35 VHVFLNILRSISKEETXEYVLALIDEMLAANPKRAALFYDKS-LSGEDIYDPFLRLLLKG 211 V+ F++++ ISK++ Y L LID+ML + R +F D + L + F+ LL + Sbjct: 69 VYAFVHLMSQISKDDYVRYTLTLIDDMLREDVTRTIIFEDVAVLLKRSPFSFFMGLLHRQ 128 Query: 212 XWFVQEKSCKILTHL 256 ++ + ILT + Sbjct: 129 DQYIVHITFSILTKM 143
>VATH2_CAEEL (Q22494) Probable vacuolar ATP synthase subunit H 2 (EC 3.6.3.14)| (V-ATPase H subunit 2) (Vacuolar proton pump H subunit 2) (Vacuolar proton pump subunit SFD 2) Length = 470 Score = 34.7 bits (78), Expect = 0.098 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Frame = +2 Query: 50 NILRSISKEETXEYVLALIDEMLAANPKRAALFYDKSL-SGEDIYDPFLRLLLKGXWFVQ 226 N++ ++K++ YVL L D+ML + R LF+ + ++ +L +L + F+ Sbjct: 83 NLITQVAKDQNVRYVLTLFDDMLQEDKSRVELFHSAAARQKRTVWSQYLGILQRQDNFIV 142 Query: 227 EKSCKILTHL 256 + I+ L Sbjct: 143 NQMSSIIAKL 152
>RBM10_RAT (P70501) RNA-binding protein 10 (RNA-binding motif protein 10)| (S1-1 protein) Length = 852 Score = 30.8 bits (68), Expect = 1.4 Identities = 18/47 (38%), Positives = 26/47 (55%) Frame = +2 Query: 284 GMVPNGEASNSKSKLTSIHDVLKGLVDWLCSQLRNPTHPNXSIPTAT 424 G G A+NS+S VLK S+L++PTHP+ ++P AT Sbjct: 436 GSSGQGTATNSQSYTIMSPAVLK-------SELQSPTHPSSALPPAT 475
>RBM10_HUMAN (P98175) RNA-binding protein 10 (RNA-binding motif protein 10)| (DXS8237E) Length = 929 Score = 30.4 bits (67), Expect = 1.9 Identities = 17/42 (40%), Positives = 25/42 (59%) Frame = +2 Query: 299 GEASNSKSKLTSIHDVLKGLVDWLCSQLRNPTHPNXSIPTAT 424 G A+NS+S VLK S+L++PTHP+ ++P AT Sbjct: 518 GTAANSQSYTIMSPAVLK-------SELQSPTHPSSALPPAT 552
>XPO4_MOUSE (Q9ESJ0) Exportin-4 (Exp4)| Length = 1151 Score = 29.6 bits (65), Expect = 3.2 Identities = 25/85 (29%), Positives = 41/85 (48%) Frame = +2 Query: 8 LLDEDGPSYVHVFLNILRSISKEETXEYVLALIDEMLAANPKRAALFYDKSLSGEDIYDP 187 LL++ + FL + + + +YV I +A KR +L DKS+ + I+ Sbjct: 84 LLEKGSIESLRTFL-LTYVLQRPNLQKYVREQILLAVAVIVKRGSL--DKSIDCKSIFHE 140 Query: 188 FLRLLLKGXWFVQEKSCKILTHLIS 262 +L+ G VQ +C ILT L+S Sbjct: 141 VSQLISSGNPTVQTLACSILTALLS 165
>XPO4_HUMAN (Q9C0E2) Exportin-4 (Exp4)| Length = 1151 Score = 29.6 bits (65), Expect = 3.2 Identities = 25/85 (29%), Positives = 41/85 (48%) Frame = +2 Query: 8 LLDEDGPSYVHVFLNILRSISKEETXEYVLALIDEMLAANPKRAALFYDKSLSGEDIYDP 187 LL++ + FL + + + +YV I +A KR +L DKS+ + I+ Sbjct: 84 LLEKGSIESLRTFL-LTYVLQRPNLQKYVREQILLAVAVIVKRGSL--DKSIDCKSIFHE 140 Query: 188 FLRLLLKGXWFVQEKSCKILTHLIS 262 +L+ G VQ +C ILT L+S Sbjct: 141 VSQLISSGNPTVQTLACSILTALLS 165
>MREBH_BACSU (P39763) Protein mreBH| Length = 335 Score = 29.6 bits (65), Expect = 3.2 Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 2/134 (1%) Frame = +2 Query: 2 GPLLDEDGPSYVHVFLNILRSISKEETXEYVLALIDEMLAANPKRAALFYDKSLSGEDIY 181 G LDED S+V N+L E T E V I L + A + G D+ Sbjct: 182 GDQLDEDIVSFVRKKYNLLIG---ERTAEQVKMEIGHALIEHIPEAM-----EIRGRDLV 233 Query: 182 DPFLRLLLKGXWFVQEKSCKILTHLISARPKLXNGMVP--NGEASNSKSKLTSIHDVLKG 355 + ++ +Q+ + L H++ A P +G+ + LT +L G Sbjct: 234 TGLPKTIMLQSNEIQDAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNG 293 Query: 356 LVDWLCSQLRNPTH 397 + +WL ++ P H Sbjct: 294 IKEWLTEEIVVPVH 307
>NBEA_CAEEL (Q19317) Putative neurobeachin homolog| Length = 2507 Score = 29.3 bits (64), Expect = 4.1 Identities = 12/32 (37%), Positives = 21/32 (65%) Frame = +2 Query: 35 VHVFLNILRSISKEETXEYVLALIDEMLAANP 130 VH LN+L ++ +++ VLAL+ +LA +P Sbjct: 780 VHTLLNLLATVREDDNLYDVLALVTRLLAEHP 811
>ALF_NEUCR (P53444) Fructose-bisphosphate aldolase (EC 4.1.2.13)| Length = 362 Score = 28.9 bits (63), Expect = 5.4 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Frame = +2 Query: 266 RPKLXNGMVP-NGEASNSKSKLTSIHDVLKGLVDWLCSQLRNPTHPN 403 R + NG+V N + S L I D + +D+L SQ+ NP PN Sbjct: 279 REAISNGVVKVNVDTDLQWSYLVGIRDYILNNIDYLRSQVGNPEGPN 325
>BIG2_HUMAN (Q9Y6D5) Brefeldin A-inhibited guanine nucleotide-exchange protein| 2 (Brefeldin A-inhibited GEP 2) Length = 1785 Score = 28.5 bits (62), Expect = 7.1 Identities = 31/125 (24%), Positives = 48/125 (38%), Gaps = 3/125 (2%) Frame = +2 Query: 32 YVHVFLNILR-SISKEETXEYVLALIDEMLAANPKRAALF--YDKSLSGEDIYDPFLRLL 202 + +FLNIL S S E V+ + + A ++ YD L+ +I+ Sbjct: 478 FKEIFLNILETSTSSFEHRWMVIQTLTRICADAQCVVDIYVNYDCDLNAANIF------- 530 Query: 203 LKGXWFVQEKSCKILTHLISARPKLXNGMVPNGEASNSKSKLTSIHDVLKGLVDWLCSQL 382 E+ L+ + R GM P E S K L + +LK +V+W Sbjct: 531 --------ERLVNDLSKIAQGRSGHELGMTPLQELSLRKKGLECLVSILKCMVEWSKDLY 582 Query: 383 RNPTH 397 NP H Sbjct: 583 VNPNH 587
>ECM29_MOUSE (Q6PDI5) Proteasome-associated protein ECM29 homolog (Ecm29)| Length = 1840 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%) Frame = +2 Query: 140 ALFYDKSLSGE---DIYDPFLRLLLKGXWFVQEKSCKILTHLISARP 271 AL DKS+ + +I ++ L W V+E SC L L+ RP Sbjct: 1143 ALVTDKSMVDKYLKEILQDLIKNLTSNMWRVRESSCLALNDLLRGRP 1189
>SPG2_STRSG (P19909) Immunoglobulin G binding protein G precursor (IgG binding| protein G) Length = 593 Score = 28.1 bits (61), Expect = 9.2 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 3/39 (7%) Frame = +2 Query: 65 ISKEETXEYVLALIDEMLAANPKR---AALFYDKSLSGE 172 I+ +T E V ALIDE+LAA PK + K+L GE Sbjct: 278 INNAKTVEGVKALIDEILAALPKTDTYKLILNGKTLKGE 316
>RNA12_YEAST (P32843) Protein RNA12| Length = 850 Score = 28.1 bits (61), Expect = 9.2 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = +2 Query: 41 VFLN-ILRSISKEETXEYVLALIDEMLAANPKRAALFYDKSLSGEDIYDP 187 VF N IL SKE + YVL+ +++ L+Y+K GE++ +P Sbjct: 574 VFKNLILSDASKENSRNYVLSQLEDY---------LYYNKKSKGENVKEP 614
>ECM29_PONPY (Q5R6J0) Proteasome-associated protein ECM29 homolog (Ecm29)| (Fragment) Length = 1810 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%) Frame = +2 Query: 140 ALFYDKSLSGE---DIYDPFLRLLLKGXWFVQEKSCKILTHLISARP 271 AL DKS+ + +I ++ L W V+E SC L L+ RP Sbjct: 1113 ALVTDKSMVDKYLKEILQDLVKNLTSNTWRVRESSCLALNDLLRGRP 1159
>UL79_HHV7J (P52470) Protein U52| Length = 254 Score = 28.1 bits (61), Expect = 9.2 Identities = 9/24 (37%), Positives = 15/24 (62%) Frame = +2 Query: 149 YDKSLSGEDIYDPFLRLLLKGXWF 220 Y G+++Y+PF+R + K WF Sbjct: 167 YFNKFWGQEVYEPFIRKICKHLWF 190 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,863,353 Number of Sequences: 219361 Number of extensions: 956309 Number of successful extensions: 2137 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2096 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2135 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
