| Clone Name | bags6d22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_185755.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1694 Score = 391 bits (197), Expect = e-105 Identities = 363/422 (86%) Strand = Plus / Plus Query: 1 aggtccgttgcttgatgaggatggaccatcgtatgttcatgnnnnnnngaatatcttgcg 60 |||||| ||||||||||||||||| ||||| ||||||| | |||||||||||| Sbjct: 251 aggtcctttgcttgatgaggatgggccatcctatgttcgagtgttcctgaatatcttgcg 310 Query: 61 aagcatctctaaggaagagaccgnggaatatgtgcttgccctcattgatgagatgcttgc 120 | |||||| |||||||| || | ||||||||||||||||| ||||||||||||||||| Sbjct: 311 gaacatctccaaggaagatactgttgaatatgtgcttgccctgattgatgagatgcttgc 370 Query: 121 agcgaatcctaaacgagcagcactgttttacgacaaatctctctctggtgaagacattta 180 || ||||||||||||||||||||||| || || || |||||||||||||||||||| || Sbjct: 371 agtaaatcctaaacgagcagcactgttctatgataactctctctctggtgaagacatcta 430 Query: 181 cgatcctttcctaagactgctcttgaaaggtnactggttcgtacaggaaaagagctgtaa 240 ||| |||||||||||| |||||||||||||| ||||||| || || ||||| || ||||| Sbjct: 431 cgaccctttcctaagattgctcttgaaaggtaactggtttgtgcaagaaaaaagttgtaa 490 Query: 241 gatattgactcacttaataagtgcgagacctaagcttcanaacggcatggttccaaatgg 300 ||||||||| || |||||||||| |||| ||| | || || ||||| ||||||||||| Sbjct: 491 gatattgacccaaataataagtgcacgacccaagatgcagaatggcatagttccaaatgg 550 Query: 301 agaggcttcaaattcaaagagcaagcttacatcaattcatgatgtgttaaagggcttggt 360 ||||||||||||||||||||||||||| ||||| | ||| |||||||||| || ||||| Sbjct: 551 agaggcttcaaattcaaagagcaagctaacatctactcaagatgtgttaagaggtttggt 610 Query: 361 tgattggctctgttctcagctcaggaaccccacccacccgaactgntctattcctactgc 420 ||||||||||||||||||||| ||||| || |||||||| ||||| ||| |||||||||| Sbjct: 611 tgattggctctgttctcagctgaggaatcctacccacccaaactgttctgttcctactgc 670 Query: 421 ta 422 || Sbjct: 671 ta 672
>dbj|AK104331.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-D11, full insert sequence Length = 1694 Score = 391 bits (197), Expect = e-105 Identities = 363/422 (86%) Strand = Plus / Plus Query: 1 aggtccgttgcttgatgaggatggaccatcgtatgttcatgnnnnnnngaatatcttgcg 60 |||||| ||||||||||||||||| ||||| ||||||| | |||||||||||| Sbjct: 251 aggtcctttgcttgatgaggatgggccatcctatgttcgagtgttcctgaatatcttgcg 310 Query: 61 aagcatctctaaggaagagaccgnggaatatgtgcttgccctcattgatgagatgcttgc 120 | |||||| |||||||| || | ||||||||||||||||| ||||||||||||||||| Sbjct: 311 gaacatctccaaggaagatactgttgaatatgtgcttgccctgattgatgagatgcttgc 370 Query: 121 agcgaatcctaaacgagcagcactgttttacgacaaatctctctctggtgaagacattta 180 || ||||||||||||||||||||||| || || || |||||||||||||||||||| || Sbjct: 371 agtaaatcctaaacgagcagcactgttctatgataactctctctctggtgaagacatcta 430 Query: 181 cgatcctttcctaagactgctcttgaaaggtnactggttcgtacaggaaaagagctgtaa 240 ||| |||||||||||| |||||||||||||| ||||||| || || ||||| || ||||| Sbjct: 431 cgaccctttcctaagattgctcttgaaaggtaactggtttgtgcaagaaaaaagttgtaa 490 Query: 241 gatattgactcacttaataagtgcgagacctaagcttcanaacggcatggttccaaatgg 300 ||||||||| || |||||||||| |||| ||| | || || ||||| ||||||||||| Sbjct: 491 gatattgacccaaataataagtgcacgacccaagatgcagaatggcatagttccaaatgg 550 Query: 301 agaggcttcaaattcaaagagcaagcttacatcaattcatgatgtgttaaagggcttggt 360 ||||||||||||||||||||||||||| ||||| | ||| |||||||||| || ||||| Sbjct: 551 agaggcttcaaattcaaagagcaagctaacatctactcaagatgtgttaagaggtttggt 610 Query: 361 tgattggctctgttctcagctcaggaaccccacccacccgaactgntctattcctactgc 420 ||||||||||||||||||||| ||||| || |||||||| ||||| ||| |||||||||| Sbjct: 611 tgattggctctgttctcagctgaggaatcctacccacccaaactgttctgttcctactgc 670 Query: 421 ta 422 || Sbjct: 671 ta 672
>dbj|AK067714.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120K21, full insert sequence Length = 1764 Score = 391 bits (197), Expect = e-105 Identities = 363/422 (86%) Strand = Plus / Plus Query: 1 aggtccgttgcttgatgaggatggaccatcgtatgttcatgnnnnnnngaatatcttgcg 60 |||||| ||||||||||||||||| ||||| ||||||| | |||||||||||| Sbjct: 252 aggtcctttgcttgatgaggatgggccatcctatgttcgagtgttcctgaatatcttgcg 311 Query: 61 aagcatctctaaggaagagaccgnggaatatgtgcttgccctcattgatgagatgcttgc 120 | |||||| |||||||| || | ||||||||||||||||| ||||||||||||||||| Sbjct: 312 gaacatctccaaggaagatactgttgaatatgtgcttgccctgattgatgagatgcttgc 371 Query: 121 agcgaatcctaaacgagcagcactgttttacgacaaatctctctctggtgaagacattta 180 || ||||||||||||||||||||||| || || || |||||||||||||||||||| || Sbjct: 372 agtaaatcctaaacgagcagcactgttctatgataactctctctctggtgaagacatcta 431 Query: 181 cgatcctttcctaagactgctcttgaaaggtnactggttcgtacaggaaaagagctgtaa 240 ||| |||||||||||| |||||||||||||| ||||||| || || ||||| || ||||| Sbjct: 432 cgaccctttcctaagattgctcttgaaaggtaactggtttgtgcaagaaaaaagttgtaa 491 Query: 241 gatattgactcacttaataagtgcgagacctaagcttcanaacggcatggttccaaatgg 300 ||||||||| || |||||||||| |||| ||| | || || ||||| ||||||||||| Sbjct: 492 gatattgacccaaataataagtgcacgacccaagatgcagaatggcatagttccaaatgg 551 Query: 301 agaggcttcaaattcaaagagcaagcttacatcaattcatgatgtgttaaagggcttggt 360 ||||||||||||||||||||||||||| ||||| | ||| |||||||||| || ||||| Sbjct: 552 agaggcttcaaattcaaagagcaagctaacatctactcaagatgtgttaagaggtttggt 611 Query: 361 tgattggctctgttctcagctcaggaaccccacccacccgaactgntctattcctactgc 420 ||||||||||||||||||||| ||||| || |||||||| ||||| ||| |||||||||| Sbjct: 612 tgattggctctgttctcagctgaggaatcctacccacccaaactgttctgttcctactgc 671 Query: 421 ta 422 || Sbjct: 672 ta 673
>gb|AY108648.1| Zea mays PCO090155 mRNA sequence Length = 1795 Score = 246 bits (124), Expect = 5e-62 Identities = 315/380 (82%) Strand = Plus / Plus Query: 49 gaatatcttgcgaagcatctctaaggaagagaccgnggaatatgtgcttgccctcattga 108 ||||||| || | |||||||| ||||||||||| | ||||| ||||||||||||||||| Sbjct: 331 gaatatcctgtggagcatctccaaggaagagactgttgaatacgtgcttgccctcattga 390 Query: 109 tgagatgcttgcagcgaatcctaaacgagcagcactgttttacgacaaatctctctctgg 168 ||| |||||||| | ||||||||||| ||||||||||||||||| ||||||| ||||| Sbjct: 391 tgaaatgcttgcgacaaatcctaaacgtgcagcactgttttacgatcaatctctgtctgg 450 Query: 169 tgaagacatttacgatcctttcctaagactgctcttgaaaggtnactggttcgtacagga 228 |||||| ||||| || |||||| |||| || | | |||||| ||||||| ||||| || Sbjct: 451 tgaagatatttatgagcctttcttaaggttgttatggaaaggcaactggtttgtacaaga 510 Query: 229 aaagagctgtaagatattgactcacttaataagtgcgagacctaagcttcanaacggcat 288 ||| || ||||||||||||||| |||| ||||| |||| |||||||| || |||| Sbjct: 511 aaaaagttgtaagatattgactgttataattagtgcacgaccaaagcttcagaatggcac 570 Query: 289 ggttccaaatggagaggcttcaaattcaaagagcaagcttacatcaattcatgatgtgtt 348 ||||||||||||| ||||| ||||| |||||||||||||| |||| || ||||| || Sbjct: 571 acttccaaatggagatgcttcgaattcgaagagcaagcttacttcaacacacgatgtatt 630 Query: 349 aaagggcttggttgattggctctgttctcagctcaggaaccccacccacccgaactgntc 408 | || |||||||||||||||||||| ||||| ||||| || || ||||||| ||| || Sbjct: 631 gagaggtttggttgattggctctgttcacagctgaggaatcctacacacccgagctgctc 690 Query: 409 tattcctactgctacccatt 428 |||||||||| ||| ||||| Sbjct: 691 tattcctacttctatccatt 710
>gb|BT018553.1| Zea mays clone EL01N0439D12.d mRNA sequence Length = 1360 Score = 141 bits (71), Expect = 2e-30 Identities = 236/292 (80%) Strand = Plus / Plus Query: 137 gcagcactgttttacgacaaatctctctctggtgaagacatttacgatcctttcctaaga 196 |||||||||||||| || ||||| | || |||||||| ||||| || || ||| |||| Sbjct: 8 gcagcactgttttatgatcaatctttgtcgggtgaagatatttatgaaccgttcttaagg 67 Query: 197 ctgctcttgaaaggtnactggttcgtacaggaaaagagctgtaagatattgactcactta 256 || | | |||||| ||||||| ||||| ||||| || ||||||||||||||| || Sbjct: 68 ttgttatggaaaggcaactggtttgtacaagaaaaaagttgtaagatattgactgttata 127 Query: 257 ataagtgcgagacctaagcttcanaacggcatggttccaaatggagaggcttcaaattca 316 || ||||| |||| |||||||| || |||| ||||||||||||| ||||| ||||| Sbjct: 128 attagtgcacgaccgaagcttcagaatggcacacttccaaatggagatgcttcgaattcg 187 Query: 317 aagagcaagcttacatcaattcatgatgtgttaaagggcttggttgattggctctgttct 376 |||||||||||||| |||| || ||||| || | || |||||||||||||||||||| Sbjct: 188 aagagcaagcttacttcaacacacgatgtattgagaggtttggttgattggctctgttca 247 Query: 377 cagctcaggaaccccacccacccgaactgntctattcctactgctacccatt 428 ||||| ||||| || || ||||||| ||| |||||||||||| ||| ||||| Sbjct: 248 cagctgaggaatcctacacacccgagctgctctattcctacttctatccatt 299
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 127 bits (64), Expect = 3e-26 Identities = 88/96 (91%) Strand = Plus / Plus Query: 284 ggcatggttccaaatggagaggcttcaaattcaaagagcaagcttacatcaattcatgat 343 ||||| |||||||||||||||||||||||||||||||||||||| ||||| | ||| ||| Sbjct: 21765969 ggcatagttccaaatggagaggcttcaaattcaaagagcaagctaacatctactcaagat 21766028 Query: 344 gtgttaaagggcttggttgattggctctgttctcag 379 ||||||| || |||||||||||||||||||||||| Sbjct: 21766029 gtgttaagaggtttggttgattggctctgttctcag 21766064 Score = 93.7 bits (47), Expect = 4e-16 Identities = 65/71 (91%) Strand = Plus / Plus Query: 125 aatcctaaacgagcagcactgttttacgacaaatctctctctggtgaagacatttacgat 184 ||||||||||||||||||||||| || || || |||||||||||||||||||| ||||| Sbjct: 21765148 aatcctaaacgagcagcactgttctatgataactctctctctggtgaagacatctacgac 21765207 Query: 185 cctttcctaag 195 ||||||||||| Sbjct: 21765208 cctttcctaag 21765218 Score = 85.7 bits (43), Expect = 1e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 49 gaatatcttgcgaagcatctctaaggaagagaccgnggaatatgtgcttgccctcattga 108 |||||||||||| | |||||| |||||||| || | ||||||||||||||||| ||||| Sbjct: 21764989 gaatatcttgcggaacatctccaaggaagatactgttgaatatgtgcttgccctgattga 21765048 Query: 109 tgagatgcttgcag 122 |||||||||||||| Sbjct: 21765049 tgagatgcttgcag 21765062 Score = 58.0 bits (29), Expect = 2e-05 Identities = 46/52 (88%) Strand = Plus / Plus Query: 198 tgctcttgaaaggtnactggttcgtacaggaaaagagctgtaagatattgac 249 |||||||||||||| ||||||| || || ||||| || |||||||||||||| Sbjct: 21765815 tgctcttgaaaggtaactggtttgtgcaagaaaaaagttgtaagatattgac 21765866 Score = 46.1 bits (23), Expect = 0.093 Identities = 40/46 (86%) Strand = Plus / Plus Query: 377 cagctcaggaaccccacccacccgaactgntctattcctactgcta 422 ||||| ||||| || |||||||| ||||| ||| |||||||||||| Sbjct: 21766163 cagctgaggaatcctacccacccaaactgttctgttcctactgcta 21766208
>dbj|AP004401.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0534A03 Length = 153170 Score = 127 bits (64), Expect = 3e-26 Identities = 88/96 (91%) Strand = Plus / Plus Query: 284 ggcatggttccaaatggagaggcttcaaattcaaagagcaagcttacatcaattcatgat 343 ||||| |||||||||||||||||||||||||||||||||||||| ||||| | ||| ||| Sbjct: 83152 ggcatagttccaaatggagaggcttcaaattcaaagagcaagctaacatctactcaagat 83211 Query: 344 gtgttaaagggcttggttgattggctctgttctcag 379 ||||||| || |||||||||||||||||||||||| Sbjct: 83212 gtgttaagaggtttggttgattggctctgttctcag 83247 Score = 93.7 bits (47), Expect = 4e-16 Identities = 65/71 (91%) Strand = Plus / Plus Query: 125 aatcctaaacgagcagcactgttttacgacaaatctctctctggtgaagacatttacgat 184 ||||||||||||||||||||||| || || || |||||||||||||||||||| ||||| Sbjct: 82331 aatcctaaacgagcagcactgttctatgataactctctctctggtgaagacatctacgac 82390 Query: 185 cctttcctaag 195 ||||||||||| Sbjct: 82391 cctttcctaag 82401 Score = 85.7 bits (43), Expect = 1e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 49 gaatatcttgcgaagcatctctaaggaagagaccgnggaatatgtgcttgccctcattga 108 |||||||||||| | |||||| |||||||| || | ||||||||||||||||| ||||| Sbjct: 82172 gaatatcttgcggaacatctccaaggaagatactgttgaatatgtgcttgccctgattga 82231 Query: 109 tgagatgcttgcag 122 |||||||||||||| Sbjct: 82232 tgagatgcttgcag 82245 Score = 58.0 bits (29), Expect = 2e-05 Identities = 46/52 (88%) Strand = Plus / Plus Query: 198 tgctcttgaaaggtnactggttcgtacaggaaaagagctgtaagatattgac 249 |||||||||||||| ||||||| || || ||||| || |||||||||||||| Sbjct: 82998 tgctcttgaaaggtaactggtttgtgcaagaaaaaagttgtaagatattgac 83049 Score = 46.1 bits (23), Expect = 0.093 Identities = 40/46 (86%) Strand = Plus / Plus Query: 377 cagctcaggaaccccacccacccgaactgntctattcctactgcta 422 ||||| ||||| || |||||||| ||||| ||| |||||||||||| Sbjct: 83346 cagctgaggaatcctacccacccaaactgttctgttcctactgcta 83391
>emb|AJ438592.1|MCR438592 Mesembryanthemum crystallinum mRNA for putative vacuolar ATPase subunit H (vha-H gene) Length = 1735 Score = 54.0 bits (27), Expect = 4e-04 Identities = 56/66 (84%) Strand = Plus / Plus Query: 179 tacgatcctttcctaagactgctcttgaaaggtnactggttcgtacaggaaaagagctgt 238 ||||| ||||| ||||| |||||| |||||| |||||||| |||| || ||||||||| Sbjct: 447 tacgaaccttttataagattgctctggaaaggcaactggttcatacaagagaagagctgt 506 Query: 239 aagata 244 |||||| Sbjct: 507 aagata 512
>gb|AC125180.6| Mus musculus BAC clone RP23-322K1 from chromosome 14, complete sequence Length = 200560 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 301 agaggcttcaaattcaaagagcaag 325 |||||||| |||||||||||||||| Sbjct: 89313 agaggctttaaattcaaagagcaag 89337
>gb|AC154563.2| Mus musculus BAC clone RP23-401E22 from chromosome 14, complete sequence Length = 206798 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 301 agaggcttcaaattcaaagagcaag 325 |||||||| |||||||||||||||| Sbjct: 2195 agaggctttaaattcaaagagcaag 2171
>gb|AC125076.4| Mus musculus BAC clone RP23-472F9 from chromosome 2, complete sequence Length = 165496 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 256 aataagtgcgagacctaagcttca 279 |||||||| ||||||||||||||| Sbjct: 58995 aataagtgtgagacctaagcttca 58972
>ref|XM_665604.1| Plasmodium berghei strain ANKA hypothetical protein (PB301350.00.0) partial mRNA Length = 561 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 222 tacaggaaaagagctgtaagatat 245 ||||||||||||||||||| |||| Sbjct: 58 tacaggaaaagagctgtaaaatat 81
>gb|AC134858.6| Mus musculus BAC clone RP23-361A18 from chromosome 7, complete sequence Length = 214282 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 368 ctctgttctcagctcaggaaccccaccc 395 |||||||| || |||||||||||||||| Sbjct: 16112 ctctgttcacatctcaggaaccccaccc 16085
>emb|AL732587.8| Mouse DNA sequence from clone RP23-268K22 on chromosome 11 Contains the 3' end of the Galnt9 gene for UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 9, a novel gene, a novel gene (2310079P12Rik), the Hand1 gene for heart and neural crest derivatives expressed transcript 1 (eHAND, Thing1), a mitochondrial ribosomal protein S16 pseudogene (Mrps16) and two CpG islands, complete sequence Length = 132671 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 ctcaggaaccccacccaccc 399 |||||||||||||||||||| Sbjct: 100549 ctcaggaaccccacccaccc 100568
>emb|AJ328099.1|HSA328099 Homo sapiens genomic sequence surrounding NotI site, clone NL4-DB23RS Length = 752 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 actggttcgtacaggaaaag 232 |||||||||||||||||||| Sbjct: 333 actggttcgtacaggaaaag 352
>emb|AL845453.6| Mouse DNA sequence from clone RP23-296G5 on chromosome 2, complete sequence Length = 159565 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 256 aataagtgcgagacctaagcttca 279 |||||||| ||||||||||||||| Sbjct: 32338 aataagtgtgagacctaagcttca 32361
>emb|AL671916.5| Mouse DNA sequence from clone RP23-294O1 on chromosome X, complete sequence Length = 205436 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 tcctttcctaagactgctct 203 |||||||||||||||||||| Sbjct: 142637 tcctttcctaagactgctct 142618
>dbj|AB032402.1| Mus musculus BSP gene for brain serine protease, complete cds Length = 9182 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 368 ctctgttctcagctcaggaaccccaccc 395 |||||||| || |||||||||||||||| Sbjct: 3219 ctctgttcacatctcaggaaccccaccc 3192 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,245,901 Number of Sequences: 3902068 Number of extensions: 3245901 Number of successful extensions: 50217 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50157 Number of HSP's gapped (non-prelim): 55 length of query: 428 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 406 effective length of database: 17,147,199,772 effective search space: 6961763107432 effective search space used: 6961763107432 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)