>DHX9_CAEEL (Q22307) Probable ATP-dependent RNA helicase A (EC 3.6.1.-) (Nuclear|
            DNA helicase II) (NDH II)
          Length = 1301

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 19/48 (39%), Positives = 20/48 (41%)
 Frame = +2

Query: 77   PSGTELLTDTAKLYKAALGNCFEIDDWGPIEFSIMAKHFDRQGKPPYA 220
            P    LLTD A + K    N  E  DWGP   S     F  Q  PP A
Sbjct: 1165 PIKDSLLTDNALIQKGPAPNRLEYADWGP---SNNNSSFQNQDFPPAA 1209

>OCTN3_MOUSE (Q9WTN6) Organic cation/carnitine transporter 3 (Solute carrier|
           family 22 member 21) (Solute carrier family 22 member 9)
          Length = 564

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 17  YTSNTTRAGISRADQYYAXYPSGTELLTDTAKLYKAALGNC 139
           +T   T  G+     Y A +  GTE+L+ + ++  A LG C
Sbjct: 196 FTLLYTLVGMGHISNYVAAFVLGTEMLSKSVRIIFATLGVC 236

>ZCH14_MOUSE (Q8VIG0) Zinc finger CCHC domain-containing protein 14 (BDG-29)|
          Length = 956

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 19/45 (42%), Positives = 23/45 (51%)
 Frame = -1

Query: 213 GGLPCRSKCFAMMENSIGPQSSISKQLPNAAL*SFAVSVSNSVPE 79
           G LP  S C  M   +  P SSIS  L N AL + A S   S+P+
Sbjct: 49  GALPTCSACHKMAPRTETPVSSISNSLEN-ALHTSAHSTEESLPK 92

>Y2118_AQUAE (O67882) Hypothetical protein aq_2118|
          Length = 173

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 62  YYAXYPSGTELLTDTAKLYKAALGNCFEIDDWGPIEFSIMAKHFDRQGKPPY 217
           Y   YPSG+    +  KL K A     ++DD+       + KH + +G PP+
Sbjct: 112 YEFPYPSGSIDFYEEEKLVKLA-----KLDDFKVFALDSLGKHENYEGLPPF 158


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,380,236
Number of Sequences: 219361
Number of extensions: 630412
Number of successful extensions: 1438
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1438
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)