ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6d17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1XYLB_BOVIN (Q3SYZ6) Xylulose kinase (EC 2.7.1.17) (Xylulokinase) 39 0.004
2XYLB_HUMAN (O75191) Xylulose kinase (EC 2.7.1.17) (Xylulokinase) 39 0.006
3XYLB_RAT (Q3MIF4) Xylulose kinase (EC 2.7.1.17) (Xylulokinase) 39 0.006
4XYLB_MOUSE (Q3TNA1) Xylulose kinase (EC 2.7.1.17) (Xylulokinase) 39 0.006
5XYLB_PONPY (Q5R830) Xylulose kinase (EC 2.7.1.17) (Xylulokinase) 37 0.012
6YNE7_CAEEL (P30646) Hypothetical protein R08D7.7 in chromosome III 30 1.5
7XKS1_YEAST (P42826) Xylulose kinase (EC 2.7.1.17) (Xylulokinase) 30 2.6

>XYLB_BOVIN (Q3SYZ6) Xylulose kinase (EC 2.7.1.17) (Xylulokinase)|
          Length = 490

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 19/22 (86%), Positives = 19/22 (86%)
 Frame = +3

Query: 3   AVGGALELSKLTGSRAYERFTG 68
           AVGGA  LS LTGSRAYERFTG
Sbjct: 152 AVGGAQALSLLTGSRAYERFTG 173



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>XYLB_HUMAN (O75191) Xylulose kinase (EC 2.7.1.17) (Xylulokinase)|
          Length = 527

 Score = 38.5 bits (88), Expect = 0.006
 Identities = 19/22 (86%), Positives = 19/22 (86%)
 Frame = +3

Query: 3   AVGGALELSKLTGSRAYERFTG 68
           AVGGA  LS LTGSRAYERFTG
Sbjct: 155 AVGGAQALSCLTGSRAYERFTG 176



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>XYLB_RAT (Q3MIF4) Xylulose kinase (EC 2.7.1.17) (Xylulokinase)|
          Length = 536

 Score = 38.5 bits (88), Expect = 0.006
 Identities = 19/22 (86%), Positives = 19/22 (86%)
 Frame = +3

Query: 3   AVGGALELSKLTGSRAYERFTG 68
           AVGGA  LS LTGSRAYERFTG
Sbjct: 152 AVGGAQALSCLTGSRAYERFTG 173



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>XYLB_MOUSE (Q3TNA1) Xylulose kinase (EC 2.7.1.17) (Xylulokinase)|
          Length = 551

 Score = 38.5 bits (88), Expect = 0.006
 Identities = 19/22 (86%), Positives = 19/22 (86%)
 Frame = +3

Query: 3   AVGGALELSKLTGSRAYERFTG 68
           AVGGA  LS LTGSRAYERFTG
Sbjct: 167 AVGGAQALSCLTGSRAYERFTG 188



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>XYLB_PONPY (Q5R830) Xylulose kinase (EC 2.7.1.17) (Xylulokinase)|
          Length = 580

 Score = 37.4 bits (85), Expect = 0.012
 Identities = 18/22 (81%), Positives = 19/22 (86%)
 Frame = +3

Query: 3   AVGGALELSKLTGSRAYERFTG 68
           A+GGA  LS LTGSRAYERFTG
Sbjct: 152 AMGGAQALSCLTGSRAYERFTG 173



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>YNE7_CAEEL (P30646) Hypothetical protein R08D7.7 in chromosome III|
          Length = 537

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = +3

Query: 6   VGGALELSKLTGSRAYERFT 65
           VGG  E++KLTGSRA+ RF+
Sbjct: 147 VGGDQEMAKLTGSRAHHRFS 166



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>XKS1_YEAST (P42826) Xylulose kinase (EC 2.7.1.17) (Xylulokinase)|
          Length = 600

 Score = 29.6 bits (65), Expect = 2.6
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = +3

Query: 6   VGGALELSKLTGSRAYERFTG 68
           +GG  ++++LTGSRA+ RFTG
Sbjct: 167 IGGPEKMAQLTGSRAHFRFTG 187


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,820,556
Number of Sequences: 219361
Number of extensions: 44942
Number of successful extensions: 72
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 80,573,946
effective HSP length: 0
effective length of database: 80,573,946
effective search space used: 1933774704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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