ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6d17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC104889.10| Mus musculus chromosome 5, clone RP23-201D22, co... 42 0.17
2gb|AC102620.11| Mus musculus chromosome 5, clone RP23-429E19, co... 42 0.17
3gb|AC079354.4| Homo sapiens BAC clone RP11-1145F21 from 2, compl... 38 2.7
4gb|AC069148.6| Homo sapiens BAC clone RP11-107N15 from 2, comple... 38 2.7

>gb|AC104889.10| Mus musculus chromosome 5, clone RP23-201D22, complete sequence
          Length = 196086

 Score = 42.1 bits (21), Expect = 0.17
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 10    gaggagcattggagttatctaagct 34
             |||||||| ||||||||||||||||
Sbjct: 42020 gaggagcagtggagttatctaagct 41996



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>gb|AC102620.11| Mus musculus chromosome 5, clone RP23-429E19, complete sequence
          Length = 208435

 Score = 42.1 bits (21), Expect = 0.17
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 10     gaggagcattggagttatctaagct 34
              |||||||| ||||||||||||||||
Sbjct: 204673 gaggagcagtggagttatctaagct 204649



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>gb|AC079354.4| Homo sapiens BAC clone RP11-1145F21 from 2, complete sequence
          Length = 162554

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 50   gtatgagagattcactggg 68
            |||||||||||||||||||
Sbjct: 1457 gtatgagagattcactggg 1439



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>gb|AC069148.6| Homo sapiens BAC clone RP11-107N15 from 2, complete sequence
          Length = 71173

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 50    gtatgagagattcactggg 68
             |||||||||||||||||||
Sbjct: 70630 gtatgagagattcactggg 70612


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 491,907
Number of Sequences: 3902068
Number of extensions: 491907
Number of successful extensions: 23577
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23573
Number of HSP's gapped (non-prelim): 4
length of query: 69
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 48
effective length of database: 17,151,101,840
effective search space: 823252888320
effective search space used: 823252888320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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