ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT023967.1| Zea mays clone EL01N0406A06 mRNA sequence 262 8e-67
2gb|AY103959.1| Zea mays PCO068678 mRNA sequence 262 8e-67
3dbj|AK102897.1| Oryza sativa (japonica cultivar-group) cDNA clon... 236 5e-59
4dbj|AK061712.1| Oryza sativa (japonica cultivar-group) cDNA clon... 236 5e-59
5gb|AF020787.1|AF020787 Oryza sativa DNA-binding protein GBP16 (R... 214 2e-52
6gb|AC136221.2| Oryza sativa (japonica cultivar-group) chromosome... 123 5e-25
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 123 5e-25
8gb|AF281652.1|AF281652 Atriplex hortensis putative DNA binding p... 82 2e-12
9gb|BT013897.1| Lycopersicon esculentum clone 132894F, mRNA sequence 74 4e-10
10ref|XM_452380.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C04103g ... 42 1.4
11emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 42 1.4
12ref|XM_612665.2| PREDICTED: Bos taurus similar to Coagulation fa... 40 5.4
13ref|XM_750968.1| Aspergillus fumigatus Af293 MFS transporter (Af... 40 5.4
14gb|AC092814.2| Homo sapiens chromosome 1 clone RP11-565J7, compl... 40 5.4
15gb|AC154473.2| Mus musculus BAC clone RP24-120O11 from chromosom... 40 5.4
16dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
17dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
18dbj|AP002538.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
19gb|AC154212.2| Mus musculus BAC clone RP24-120A9 from 16, comple... 40 5.4
20gb|AC161238.7| Mus musculus chromosome 19, clone RP24-288C19, co... 40 5.4
21emb|AL713920.14| Mouse DNA sequence from clone RP23-330B20 on ch... 40 5.4

>gb|BT023967.1| Zea mays clone EL01N0406A06 mRNA sequence
          Length = 1422

 Score =  262 bits (132), Expect = 8e-67
 Identities = 300/355 (84%), Gaps = 4/355 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgttgacatttgtgagaagggtgacaatttcataacagagcaaactgggaatgtctaca 60
           |||||||| |||||||||||||||||  |||||||| |||||||||||||||||||||||
Sbjct: 381 ttgttgacctttgtgagaagggtgactctttcataagagagcaaactgggaatgtctaca 440

                                                                       
Query: 61  agtaacgtgtaagtaggaagtattgaaaggggcattgctttcccgacatgcgtatccgtg 120
           || |   || ||  |||||| ||||||||||||||||||||||| || || || || |||
Sbjct: 441 agaa---tgcaaagaggaag-attgaaaggggcattgctttcccaacctgtgtttcggtg 496

                                                                       
Query: 121 aacaacacggtctgtcatttctccccactggcaactgatgattctgtactcgaagaaaat 180
           |||||||| ||||| || |||||||| ||  | || |||||| | || || |||||||||
Sbjct: 497 aacaacacagtctgccacttctccccgcttaccacagatgatgcagttctggaagaaaat 556

                                                                       
Query: 181 gacatggtgaagattgatatggcttgccatattgatggatttattgctgtggtagctcat 240
           |||||||| || ||||| ||||  || ||||||||||| | |||||||||||| || |||
Sbjct: 557 gacatggttaaaattgacatggggtgtcatattgatggctntattgctgtggtggcacat 616

                                                                       
Query: 241 acacatgtcatcaaagctggtccggttactggaagagcagctgatgttctggctgctgcc 300
           |||||||| ||   |  ||| || || || |||||||||||||||||||| |||||||||
Sbjct: 617 acacatgtaattgcaaatgggcctgtcacaggaagagcagctgatgttcttgctgctgcc 676

                                                                  
Query: 301 aacacagctgcanaagttgcaatgaggcttgttagacctggaaagaanaataagg 355
           |||||||| ||| ||||||||||||||||||| |||||||| ||||| |||||||
Sbjct: 677 aacacagcagcagaagttgcaatgaggcttgtcagacctgggaagaagaataagg 731



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>gb|AY103959.1| Zea mays PCO068678 mRNA sequence
          Length = 1621

 Score =  262 bits (132), Expect = 8e-67
 Identities = 334/399 (83%), Gaps = 4/399 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgttgacatttgtgagaagggtgacaatttcataacagagcaaactgggaatgtctaca 60
           |||||||| |||| |||||||| |||  |||||||| |||||||||||||||||| ||||
Sbjct: 361 ttgttgacctttgcgagaagggcgactctttcataagagagcaaactgggaatgtttaca 420

                                                                       
Query: 61  agtaacgtgtaagtaggaagtattgaaaggggcattgctttcccgacatgcgtatccgtg 120
           || ||||   ||  |||||| ||||||||||| ||||||||||| || || |||||||| 
Sbjct: 421 ag-aacgc--aaagaggaag-attgaaaggggtattgctttcccaacctgtgtatccgtc 476

                                                                       
Query: 121 aacaacacggtctgtcatttctccccactggcaactgatgattctgtactcgaagaaaat 180
           ||  |||| || || || ||||| || || ||||| |||||| | || || |||||||||
Sbjct: 477 aatgacacagtttgccacttctcaccgcttgcaaccgatgatgccgttctggaagaaaat 536

                                                                       
Query: 181 gacatggtgaagattgatatggcttgccatattgatggatttattgctgtggtagctcat 240
           |||||||| || ||||||||||  || ||||||||||| |||||||||||||| || |||
Sbjct: 537 gacatggttaaaattgatatgggctgtcatattgatggctttattgctgtggtggcacat 596

                                                                       
Query: 241 acacatgtcatcaaagctggtccggttactggaagagcagctgatgttctggctgctgcc 300
           |||||||| || | |  ||| || || || ||||| || | |||||| || |||||||||
Sbjct: 597 acacatgtaattacaaatgggcctgtcacaggaagggctggtgatgtgcttgctgctgcc 656

                                                                       
Query: 301 aacacagctgcanaagttgcaatgaggcttgttagacctggaaagaanaataaggatgtc 360
           |||||||| ||| |||| |||||| ||||||| |||||||| ||||| ||||||||||| 
Sbjct: 657 aacacagcagcagaagtcgcaatgcggcttgtgagacctgggaagaaaaataaggatgtt 716

                                                  
Query: 361 actgangcaattcanaaagttgctgctgcttatgattgc 399
           ||||| |||||||| ||||||||||||||||||||||||
Sbjct: 717 actgaagcaattcagaaagttgctgctgcttatgattgc 755



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>dbj|AK102897.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112P14, full
           insert sequence
          Length = 1530

 Score =  236 bits (119), Expect = 5e-59
 Identities = 329/395 (83%), Gaps = 4/395 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgttgacatttgtgagaagggtgacaatttcataacagagcaaactgggaatgtctaca 60
           |||||||||| ||||||||||| ||   || ||||| |||||||||||| ||  ||||||
Sbjct: 286 ttgttgacatctgtgagaagggcgattcttacataagagagcaaactggcaacatctaca 345

                                                                       
Query: 61  agtaacgtgtaagtaggaagtattgaaaggggcattgctttcccgacatgcgtatccgtg 120
           || || ||| ||| |||||| |||||||| ||  ||||||| || ||||| ||||| |||
Sbjct: 346 ag-aatgtg-aag-aggaag-attgaaagaggtgttgcttttccaacatgtgtatctgtg 401

                                                                       
Query: 121 aacaacacggtctgtcatttctccccactggcaactgatgattctgtactcgaagaaaat 180
           |||||||| ||||| |||||||| || || || ||||||||  | || || || ||||||
Sbjct: 402 aacaacacagtctgccatttctctccgctagccactgatgaggcagtcctggaggaaaat 461

                                                                       
Query: 181 gacatggtgaagattgatatggcttgccatattgatggatttattgctgtggtagctcat 240
           || ||||| || ||||||||||  || ||||||||||| |||||||| ||||| ||||||
Sbjct: 462 gatatggtcaaaattgatatgggatgtcatattgatggttttattgccgtggtggctcat 521

                                                                       
Query: 241 acacatgtcatcaaagctggtccggttactggaagagcagctgatgttctggctgctgcc 300
           |||||||| ||| | | |||  | || ||||| | |||||| |||||||| |||||||||
Sbjct: 522 acacatgttatccatgatggagcagtcactgggaaagcagcagatgttcttgctgctgcc 581

                                                                       
Query: 301 aacacagctgcanaagttgcaatgaggcttgttagacctggaaagaanaataaggatgtc 360
           |||||||| ||| |||||||  ||||||||||||||||||| ||||| || |||||||||
Sbjct: 582 aacacagcggcagaagttgctctgaggcttgttagacctgggaagaagaacaaggatgtc 641

                                              
Query: 361 actgangcaattcanaaagttgctgctgcttatga 395
           || || || ||||| ||||||||||||||||||||
Sbjct: 642 accgaagcgattcagaaagttgctgctgcttatga 676



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>dbj|AK061712.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-G08, full
           insert sequence
          Length = 1427

 Score =  236 bits (119), Expect = 5e-59
 Identities = 329/395 (83%), Gaps = 4/395 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgttgacatttgtgagaagggtgacaatttcataacagagcaaactgggaatgtctaca 60
           |||||||||| ||||||||||| ||   || ||||| |||||||||||| ||  ||||||
Sbjct: 288 ttgttgacatctgtgagaagggcgattcttacataagagagcaaactggcaacatctaca 347

                                                                       
Query: 61  agtaacgtgtaagtaggaagtattgaaaggggcattgctttcccgacatgcgtatccgtg 120
           || || ||| ||| |||||| |||||||| ||  ||||||| || ||||| ||||| |||
Sbjct: 348 ag-aatgtg-aag-aggaag-attgaaagaggtgttgcttttccaacatgtgtatctgtg 403

                                                                       
Query: 121 aacaacacggtctgtcatttctccccactggcaactgatgattctgtactcgaagaaaat 180
           |||||||| ||||| |||||||| || || || ||||||||  | || || || ||||||
Sbjct: 404 aacaacacagtctgccatttctctccgctagccactgatgaggcagtcctggaggaaaat 463

                                                                       
Query: 181 gacatggtgaagattgatatggcttgccatattgatggatttattgctgtggtagctcat 240
           || ||||| || ||||||||||  || ||||||||||| |||||||| ||||| ||||||
Sbjct: 464 gatatggtcaaaattgatatgggatgtcatattgatggttttattgccgtggtggctcat 523

                                                                       
Query: 241 acacatgtcatcaaagctggtccggttactggaagagcagctgatgttctggctgctgcc 300
           |||||||| ||| | | |||  | || ||||| | |||||| |||||||| |||||||||
Sbjct: 524 acacatgttatccatgatggagcagtcactgggaaagcagcagatgttcttgctgctgcc 583

                                                                       
Query: 301 aacacagctgcanaagttgcaatgaggcttgttagacctggaaagaanaataaggatgtc 360
           |||||||| ||| |||||||  ||||||||||||||||||| ||||| || |||||||||
Sbjct: 584 aacacagcggcagaagttgctctgaggcttgttagacctgggaagaagaacaaggatgtc 643

                                              
Query: 361 actgangcaattcanaaagttgctgctgcttatga 395
           || || || ||||| ||||||||||||||||||||
Sbjct: 644 accgaagcgattcagaaagttgctgctgcttatga 678



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>gb|AF020787.1|AF020787 Oryza sativa DNA-binding protein GBP16 (Rgbp16) mRNA, complete cds
          Length = 1422

 Score =  214 bits (108), Expect = 2e-52
 Identities = 326/395 (82%), Gaps = 4/395 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgttgacatttgtgagaagggtgacaatttcataacagagcaaactgggaatgtctaca 60
           |||||||||| ||||||||||| ||   || ||||| |||||||||||| ||  ||||||
Sbjct: 233 ttgttgacatctgtgagaagggcgattcttacataagagagcaaactggcaacatctaca 292

                                                                       
Query: 61  agtaacgtgtaagtaggaagtattgaaaggggcattgctttcccgacatgcgtatccgtg 120
           || || ||| ||| |||||| |||||||| ||  ||||||| || ||||| || || |||
Sbjct: 293 ag-aatgtg-aag-aggaag-attgaaagaggtgttgcttttccaacatgtgtntctgtg 348

                                                                       
Query: 121 aacaacacggtctgtcatttctccccactggcaactgatgattctgtactcgaagaaaat 180
           |||||||| ||||| |||||||| || || || ||||||||  | || || || ||||||
Sbjct: 349 aacaacacagtctgccatttctctccgctagccactgatgaggcagtcctggaggaaaat 408

                                                                       
Query: 181 gacatggtgaagattgatatggcttgccatattgatggatttattgctgtggtagctcat 240
           || ||||| || ||||||||||  || ||||||||||| |||||||| ||||| ||||||
Sbjct: 409 gatatggtcaaaattgatatgggatgtcatattgatggttttattgccgtggtggctcat 468

                                                                       
Query: 241 acacatgtcatcaaagctggtccggttactggaagagcagctgatgttctggctgctgcc 300
           |||||||| ||| | | |||  | || ||||| | |||||| |||||||| |||||||||
Sbjct: 469 acacatgttatccatgatggagcagtcactgggaaagcagcagatgttcttgctgctgcc 528

                                                                       
Query: 301 aacacagctgcanaagttgcaatgaggcttgttagacctggaaagaanaataaggatgtc 360
           |||||||| ||| |||||||  ||||| ||||||||||||| ||||| || |||||||||
Sbjct: 529 aacacagcggcagaagttgctctgaggtttgttagacctgggaagaagaacaaggatgtc 588

                                              
Query: 361 actgangcaattcanaaagttgctgctgcttatga 395
           || || || ||||| |||||||||||||| |||||
Sbjct: 589 accgaagcgattcagaaagttgctgctgcctatga 623



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>gb|AC136221.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0077J17, complete sequence
          Length = 141598

 Score =  123 bits (62), Expect = 5e-25
 Identities = 130/153 (84%)
 Strand = Plus / Plus

                                                                         
Query: 195   tgatatggcttgccatattgatggatttattgctgtggtagctcatacacatgtcatcaa 254
             ||||||||  || ||||||||||| |||||||| ||||| |||||||||||||| ||| |
Sbjct: 58835 tgatatgggatgtcatattgatggttttattgccgtggtggctcatacacatgttatcca 58894

                                                                         
Query: 255   agctggtccggttactggaagagcagctgatgttctggctgctgccaacacagctgcana 314
              | |||  | || ||||| | |||||| |||||||| ||||||||||||||||| ||| |
Sbjct: 58895 tgatggagcagtcactgggaaagcagcagatgttcttgctgctgccaacacagcggcaga 58954

                                              
Query: 315   agttgcaatgaggcttgttagacctggaaagaa 347
             ||||||  ||||||||||||||||||| |||||
Sbjct: 58955 agttgctctgaggcttgttagacctgggaagaa 58987



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                         
Query: 352   aaggatgtcactgangcaattcanaaagttgctgctgcttatga 395
             ||||||||||| || || ||||| ||||||||||||||||||||
Sbjct: 59248 aaggatgtcaccgaagcgattcagaaagttgctgctgcttatga 59291



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                         
Query: 82    attgaaaggggcattgctttcccgacatgcgtatccgtgaacaacacggtctgtcatttc 141
             |||||||| ||  ||||||| || ||||| ||||| ||||||||||| ||||| ||||||
Sbjct: 58646 attgaaagaggtgttgcttttccaacatgtgtatctgtgaacaacacagtctgccatttc 58705

                                 
Query: 142   tccccactggcaactgatga 161
             || || || || ||||||||
Sbjct: 58706 tctccgctagccactgatga 58725



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  123 bits (62), Expect = 5e-25
 Identities = 130/153 (84%)
 Strand = Plus / Plus

                                                                            
Query: 195      tgatatggcttgccatattgatggatttattgctgtggtagctcatacacatgtcatcaa 254
                ||||||||  || ||||||||||| |||||||| ||||| |||||||||||||| ||| |
Sbjct: 16418398 tgatatgggatgtcatattgatggttttattgccgtggtggctcatacacatgttatcca 16418457

                                                                            
Query: 255      agctggtccggttactggaagagcagctgatgttctggctgctgccaacacagctgcana 314
                 | |||  | || ||||| | |||||| |||||||| ||||||||||||||||| ||| |
Sbjct: 16418458 tgatggagcagtcactgggaaagcagcagatgttcttgctgctgccaacacagcggcaga 16418517

                                                 
Query: 315      agttgcaatgaggcttgttagacctggaaagaa 347
                ||||||  ||||||||||||||||||| |||||
Sbjct: 16418518 agttgctctgaggcttgttagacctgggaagaa 16418550



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                            
Query: 352      aaggatgtcactgangcaattcanaaagttgctgctgcttatga 395
                ||||||||||| || || ||||| ||||||||||||||||||||
Sbjct: 16418811 aaggatgtcaccgaagcgattcagaaagttgctgctgcttatga 16418854



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                            
Query: 82       attgaaaggggcattgctttcccgacatgcgtatccgtgaacaacacggtctgtcatttc 141
                |||||||| ||  ||||||| || ||||| ||||| ||||||||||| ||||| ||||||
Sbjct: 16418209 attgaaagaggtgttgcttttccaacatgtgtatctgtgaacaacacagtctgccatttc 16418268

                                    
Query: 142      tccccactggcaactgatga 161
                || || || || ||||||||
Sbjct: 16418269 tctccgctagccactgatga 16418288



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>gb|AF281652.1|AF281652 Atriplex hortensis putative DNA binding protein mRNA, complete cds
          Length = 1460

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 169/212 (79%)
 Strand = Plus / Plus

                                                                       
Query: 133 tgtcatttctccccactggcaactgatgattctgtactcgaagaaaatgacatggtgaag 192
           ||||||||||| ||||| || | |||||| || || || ||||||  |||  | ||||| 
Sbjct: 347 tgtcatttctcaccacttgccagtgatgactcagtgcttgaagaaggtgatttagtgaaa 406

                                                                       
Query: 193 attgatatggcttgccatattgatggatttattgctgtggtagctcatacacatgtcatc 252
           |||||||||| ||| ||||||||||| ||||||||||| || || || || |||||||| 
Sbjct: 407 attgatatgggttgtcatattgatggctttattgctgttgttgcacacactcatgtcatt 466

                                                                       
Query: 253 aaagctggtccggttactggaagagcagctgatgttctggctgctgccaacacagctgca 312
            |||  |||||||| || || |||  |||||||||||| || ||  ||||||| ||||| 
Sbjct: 467 caagaaggtccggtaaccggtagaaaagctgatgttcttgcagcaaccaacactgctgct 526

                                           
Query: 313 naagttgcaatgaggcttgttagacctggaaa 344
            | |||||  |||||||||| || ||||||||
Sbjct: 527 gaggttgctttgaggcttgtgaggcctggaaa 558



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>gb|BT013897.1| Lycopersicon esculentum clone 132894F, mRNA sequence
          Length = 1587

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 167/209 (79%), Gaps = 2/209 (0%)
 Strand = Plus / Plus

                                                                       
Query: 188 tgaagattgatatggcttgccatattgatggatttattgctgtggtagctcatacacatg 247
           |||||||||||||||  || || ||||||||||||||||| || || |  ||||||||||
Sbjct: 520 tgaagattgatatgggatgtcacattgatggatttattgcagtagttggacatacacatg 579

                                                                       
Query: 248 t-catcaaagctggtccggttactggaagagcagctgatgttctggctgctgccaacaca 306
           | | ||| |  ||| || |||||||| ||||| ||||||||  | || ||||| || |||
Sbjct: 580 ttcttcacaa-tggaccagttactggtagagctgctgatgtcattgcagctgctaataca 638

                                                                       
Query: 307 gctgcanaagttgcaatgaggcttgttagacctggaaagaanaataaggatgtcactgan 366
           |||||  |||||||  |||| ||||| ||||| |||||||| ||   |||||| || || 
Sbjct: 639 gctgctgaagttgctttgagacttgtgagaccaggaaagaagaactcggatgtaacagaa 698

                                        
Query: 367 gcaattcanaaagttgctgctgcttatga 395
           || ||||| || ||||||||||| |||||
Sbjct: 699 gctattcagaaggttgctgctgcctatga 727



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>ref|XM_452380.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C04103g predicted mRNA
          Length = 1695

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 162  ttctgtactcgaagaaaatga 182
            |||||||||||||||||||||
Sbjct: 1023 ttctgtactcgaagaaaatga 1043



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>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 1753957

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 162    ttctgtactcgaagaaaatga 182
              |||||||||||||||||||||
Sbjct: 373425 ttctgtactcgaagaaaatga 373405



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>ref|XM_612665.2| PREDICTED: Bos taurus similar to Coagulation factor VIII precursor
           (Procoagulant component) (Antihemophilic factor) (AHF)
           (LOC533300), partial mRNA
          Length = 3747

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 174 agaaaatgacatggtgaagattga 197
           |||||||||||||| |||||||||
Sbjct: 888 agaaaatgacatggagaagattga 911



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>ref|XM_750968.1| Aspergillus fumigatus Af293 MFS transporter (Afu2g17270) partial
           mRNA
          Length = 1092

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 277 gcagctgatgttctggctgctgcc 300
           ||||||||||||||||||| ||||
Sbjct: 912 gcagctgatgttctggctggtgcc 935



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>gb|AC092814.2| Homo sapiens chromosome 1 clone RP11-565J7, complete sequence
          Length = 170245

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   ccatattgatggatttattg 226
             ||||||||||||||||||||
Sbjct: 26384 ccatattgatggatttattg 26403



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>gb|AC154473.2| Mus musculus BAC clone RP24-120O11 from chromosome 16, complete
            sequence
          Length = 190965

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 33   ataacagagcaaactgggaa 52
            ||||||||||||||||||||
Sbjct: 4051 ataacagagcaaactgggaa 4070



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 167     tactcgaagaaaatgacatg 186
               ||||||||||||||||||||
Sbjct: 1683057 tactcgaagaaaatgacatg 1683038



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>dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0504H10
          Length = 143515

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   tactcgaagaaaatgacatg 186
             ||||||||||||||||||||
Sbjct: 25400 tactcgaagaaaatgacatg 25381



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>dbj|AP002538.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0408F06
          Length = 137462

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    tactcgaagaaaatgacatg 186
              ||||||||||||||||||||
Sbjct: 120288 tactcgaagaaaatgacatg 120269



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>gb|AC154212.2| Mus musculus BAC clone RP24-120A9 from 16, complete sequence
          Length = 148858

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    ataacagagcaaactgggaa 52
             ||||||||||||||||||||
Sbjct: 32620 ataacagagcaaactgggaa 32601



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>gb|AC161238.7| Mus musculus chromosome 19, clone RP24-288C19, complete sequence
          Length = 193445

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 267    tactggaagagcagctgatgttct 290
              ||||| ||||||||||||||||||
Sbjct: 126078 tactgtaagagcagctgatgttct 126055



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>emb|AL713920.14| Mouse DNA sequence from clone RP23-330B20 on chromosome X, complete
             sequence
          Length = 156186

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 269   ctggaagagcagctgatgtt 288
             ||||||||||||||||||||
Sbjct: 42856 ctggaagagcagctgatgtt 42875


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,450,971
Number of Sequences: 3902068
Number of extensions: 3450971
Number of successful extensions: 63175
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63101
Number of HSP's gapped (non-prelim): 68
length of query: 405
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 383
effective length of database: 17,147,199,772
effective search space: 6567377512676
effective search space used: 6567377512676
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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