ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags6c24 |
|---|---|
| Clone Library Name | barley_pub |
>NOMO2_HUMAN (Q5JPE7) Nodal modulator 2 precursor (pM5 protein 2)| Length = 1267 Score = 111 bits (277), Expect = 1e-24 Identities = 60/153 (39%), Positives = 94/153 (61%), Gaps = 2/153 (1%) Frame = +1 Query: 4 LPTVLLSLSGEGGYRKNSVSGSGGTFSFDNLFPRSYYLRALLKEFKFTPSTVAIDLNSGE 183 LP VLLSLSG G +R N ++ G +F NL P YY + ++KEF+F PS+ I++ G+ Sbjct: 890 LPGVLLSLSG-GLFRSNLLTQDNGILTFSNLSPGQYYFKPMMKEFRFEPSSQMIEVQEGQ 948 Query: 184 SRAVEFRATRVAFSAMGSVTLLTGQPKEGVFVEA--RSESRGYYEEATTDSLGRFRLRGL 357 + + R A+S G+V+ L G+P++GV +EA +++ Y E+ TD G+FRLRGL Sbjct: 949 NLKITITGYRTAYSCYGTVSSLNGEPEQGVAMEAVGQNDCSIYGEDTVTDEEGKFRLRGL 1008 Query: 358 IPGSSYSIRVVAKDNPRLAAVERASPESVSVDV 456 +PG Y +++ A+ N +ERA P ++V Sbjct: 1009 LPGCVYHVQLKAEGNDH---IERALPHHRVIEV 1038 Score = 37.0 bits (84), Expect = 0.024 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Frame = +1 Query: 4 LPTVLLSLSGEGGYRKNSVSG--SGGTFSFDNLFPRSYYLRALLKEFKFTPSTVAIDLNS 177 L L SLS +G R +SG + TF+FDN+ P Y + + +++ + ++ +++ Sbjct: 518 LLVTLQSLSRQGEKRSLQLSGKVNAMTFTFDNVLPGKYKISIMHEDWCWKNKSLEVEVLE 577 Query: 178 GESRAVEFRAT 210 + AVEFR T Sbjct: 578 DDVSAVEFRQT 588
>NOMO3_HUMAN (P69849) Nodal modulator 3 precursor (pM5 protein 3)| Length = 1222 Score = 111 bits (277), Expect = 1e-24 Identities = 60/153 (39%), Positives = 94/153 (61%), Gaps = 2/153 (1%) Frame = +1 Query: 4 LPTVLLSLSGEGGYRKNSVSGSGGTFSFDNLFPRSYYLRALLKEFKFTPSTVAIDLNSGE 183 LP VLLSLSG G +R N ++ G +F NL P YY + ++KEF+F PS+ I++ G+ Sbjct: 890 LPGVLLSLSG-GLFRSNLLTQDNGILTFSNLSPGQYYFKPMMKEFRFEPSSQMIEVQEGQ 948 Query: 184 SRAVEFRATRVAFSAMGSVTLLTGQPKEGVFVEA--RSESRGYYEEATTDSLGRFRLRGL 357 + + R A+S G+V+ L G+P++GV +EA +++ Y E+ TD G+FRLRGL Sbjct: 949 NLKITITGYRTAYSCYGTVSSLNGEPEQGVAMEAVGQNDCSIYGEDTVTDEEGKFRLRGL 1008 Query: 358 IPGSSYSIRVVAKDNPRLAAVERASPESVSVDV 456 +PG Y +++ A+ N +ERA P ++V Sbjct: 1009 LPGCVYHVQLKAEGNDH---IERALPHHRVIEV 1038 Score = 37.0 bits (84), Expect = 0.024 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Frame = +1 Query: 4 LPTVLLSLSGEGGYRKNSVSG--SGGTFSFDNLFPRSYYLRALLKEFKFTPSTVAIDLNS 177 L L SLS +G R +SG + TF+FDN+ P Y + + +++ + ++ +++ Sbjct: 518 LLVTLQSLSRQGEKRSLQLSGKVNAMTFTFDNVLPGKYKISIMHEDWCWKNKSLEVEVLE 577 Query: 178 GESRAVEFRAT 210 + AVEFR T Sbjct: 578 DDVSAVEFRQT 588
>NOMO1_HUMAN (Q15155) Nodal modulator 1 precursor (pM5)| Length = 1222 Score = 111 bits (277), Expect = 1e-24 Identities = 60/153 (39%), Positives = 94/153 (61%), Gaps = 2/153 (1%) Frame = +1 Query: 4 LPTVLLSLSGEGGYRKNSVSGSGGTFSFDNLFPRSYYLRALLKEFKFTPSTVAIDLNSGE 183 LP VLLSLSG G +R N ++ G +F NL P YY + ++KEF+F PS+ I++ G+ Sbjct: 890 LPGVLLSLSG-GLFRSNLLTQDNGILTFSNLSPGQYYFKPMMKEFRFEPSSQMIEVQEGQ 948 Query: 184 SRAVEFRATRVAFSAMGSVTLLTGQPKEGVFVEA--RSESRGYYEEATTDSLGRFRLRGL 357 + + R A+S G+V+ L G+P++GV +EA +++ Y E+ TD G+FRLRGL Sbjct: 949 NLKITITGYRTAYSCYGTVSSLNGEPEQGVAMEAVGQNDCSIYGEDTVTDEEGKFRLRGL 1008 Query: 358 IPGSSYSIRVVAKDNPRLAAVERASPESVSVDV 456 +PG Y +++ A+ N +ERA P ++V Sbjct: 1009 LPGCVYHVQLKAEGNDH---IERALPHHRVIEV 1038 Score = 37.4 bits (85), Expect = 0.018 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Frame = +1 Query: 4 LPTVLLSLSGEGGYRKNSVSG--SGGTFSFDNLFPRSYYLRALLKEFKFTPSTVAIDLNS 177 L L SLS +G R +SG + TF+FDN+ P Y + + +++ + ++ +++ Sbjct: 518 LLVTLQSLSRQGEKRSLQLSGKVNAMTFTFDNVLPGKYKISIMHEDWCWKNKSLEVEVLE 577 Query: 178 GESRAVEFRAT 210 + AVEFR T Sbjct: 578 DDMSAVEFRQT 588
>CHSA_EMENI (P30584) Chitin synthase A (EC 2.4.1.16) (Chitin-UDP| acetyl-glucosaminyl transferase A) (Class-II chitin synthase A) Length = 1013 Score = 32.3 bits (72), Expect = 0.59 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 2/25 (8%) Frame = +3 Query: 198 VPCNPCCLQCHGFCNT--VNWPTKG 266 +P C LQC+ FCNT V W TKG Sbjct: 798 LPSYICTLQCYAFCNTHDVTWGTKG 822
>CILP1_MOUSE (Q66K08) Cartilage intermediate layer protein 1 precursor (CILP-1)| [Contains: Cartilage intermediate layer protein 1 C1; Cartilage intermediate layer protein 1 C2] Length = 1184 Score = 30.4 bits (67), Expect = 2.3 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%) Frame = +1 Query: 220 FSAMGSVTLLTGQPKEGVFVEARSESRGYYEEATTDSLGRFRLRGLIPGSSYSIRVV-AK 396 F G+++L G P G V +++ TDS GRFR+ GL P +++ K Sbjct: 224 FMLHGAISLPGGGPAPGAAVYLLAKAPKMLTR--TDSSGRFRVPGLCPDGKTILKITKTK 281 Query: 397 DNPRLAAVERASPESVSVDVD 459 P + + + S +S +++ + Sbjct: 282 FAPIMITMPKTSLKSATINAE 302
>RAB7_PEA (P31022) Ras-related protein Rab7| Length = 206 Score = 30.4 bits (67), Expect = 2.3 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%) Frame = +1 Query: 82 SFDNL--FPRSYYLRALLKE---FKFTPSTVAIDLNSGESRAVEFRATRVAFSAMGSVTL 246 SFDNL + + ++A + F F ID++ G SR V + R +A G++ Sbjct: 95 SFDNLNNWREEFLIQANPSDPENFPFVVIGNKIDIDGGNSRVVSEKKARAWCAAKGNIPY 154 Query: 247 LTGQPKEGVFVE 282 KEG+ VE Sbjct: 155 FETSAKEGINVE 166
>NRCAM_HUMAN (Q92823) Neuronal cell adhesion molecule precursor (Nr-CAM)| (NgCAM-related cell adhesion molecule) (Ng-CAM-related) (hBravo) Length = 1304 Score = 30.4 bits (67), Expect = 2.3 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 9/107 (8%) Frame = +1 Query: 166 DLNSGESRAVEFRATRVAFSAMGSVTLLT----GQPKEGVFVE--ARSESRGYYEEATTD 327 D+ +G+ +AV R + + +A + ++ G +VE + +E Sbjct: 1057 DVGAGKVQAVNTRISNLTAAAAETYANISWEYEGPEHVNFYVEYGVAGSKEEWRKEIVNG 1116 Query: 328 SLGRFRLRGLIPGSSYSIRVVAKDNPRLAAVE---RASPESVSVDVD 459 S F L+GL+PG++Y +RV A + + E P S VD Sbjct: 1117 SRSFFGLKGLMPGTAYKVRVGAVGDSGFVSSEDVFETGPAMASRQVD 1163
>DNAJ1_STRCO (P40170) Chaperone protein dnaJ 1| Length = 399 Score = 30.4 bits (67), Expect = 2.3 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = +1 Query: 22 SLSGEGGYRKNSVSGSGGTFSFD 90 +L G GG+R +G GGTF+FD Sbjct: 76 ALFGNGGFRPGPGAGGGGTFNFD 98
>CILP1_HUMAN (O75339) Cartilage intermediate layer protein 1 precursor (CILP-1)| (Cartilage intermediate-layer protein) [Contains: Cartilage intermediate layer protein 1 C1; Cartilage intermediate layer protein 1 C2] Length = 1184 Score = 29.3 bits (64), Expect = 5.0 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 1/81 (1%) Frame = +1 Query: 220 FSAMGSVTLLTGQPKEGVFVEARSESRGYYEEATTDSLGRFRLRGLIPGSSYSIRVV-AK 396 F G+V+L G P G + +++ + TDS GRFR+ GL P +++ K Sbjct: 224 FMLHGAVSLPGGAPASGAAIYLLTKTPKLLTQ--TDSDGRFRIPGLCPDGKSILKITKVK 281 Query: 397 DNPRLAAVERASPESVSVDVD 459 P + + + S ++ ++ + Sbjct: 282 FAPIVLTMPKTSLKAATIKAE 302
>A2MG_HUMAN (P01023) Alpha-2-macroglobulin precursor (Alpha-2-M)| Length = 1474 Score = 29.3 bits (64), Expect = 5.0 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 18/117 (15%) Frame = +1 Query: 103 RSYYLRALLKEFKFTPSTVAIDLNSGESRAVEFRATRVAFSAM-----------GSVTLL 249 R Y L E + ++L +S + T+++F + G V L+ Sbjct: 313 RKEYEMKLHTEAQIQEEGTVVELTGRQSSEITRTITKLSFVKVDSHFRQGIPFFGQVRLV 372 Query: 250 TGQ----PKEGVFVEARSESRGYYEEATTDSLG--RFRLRGL-IPGSSYSIRVVAKD 399 G+ P + +F+ R YY ATTD G +F + + G+S ++RV KD Sbjct: 373 DGKGVPIPNKVIFI--RGNEANYYSNATTDEHGLVQFSINTTNVMGTSLTVRVNYKD 427
>7LESS_DROME (P13368) Protein sevenless (EC 2.7.10.1)| Length = 2554 Score = 29.3 bits (64), Expect = 5.0 Identities = 20/55 (36%), Positives = 27/55 (49%) Frame = +1 Query: 241 TLLTGQPKEGVFVEARSESRGYYEEATTDSLGRFRLRGLIPGSSYSIRVVAKDNP 405 TL Q +G V+ R E + E ++ G RL G+ PGS YS+ V A P Sbjct: 1833 TLHWQQELDGENVQDRREWEAH--ERRLETAGTHRLTGIKPGSGYSLWVQAHATP 1885
>CHS1_CANAL (P23316) Chitin synthase 1 (EC 2.4.1.16) (Chitin-UDP| acetyl-glucosaminyl transferase 1) Length = 776 Score = 29.3 bits (64), Expect = 5.0 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%) Frame = +3 Query: 198 VPCNPCCLQCHGFCNT--VNWPTKG 266 +P C LQ FCNT V+W TKG Sbjct: 597 IPSYTCTLQIFAFCNTHDVSWGTKG 621
>URE2_DEBHA (Q6BM74) Protein URE2| Length = 308 Score = 29.3 bits (64), Expect = 5.0 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = +1 Query: 100 PRSYYLRALLKEFKFTPSTVAIDLNSGESRAVEF 201 P + + +L E +T+ +D N+GE RA EF Sbjct: 77 PNGFKVAIILSELNLPFNTIFLDFNNGEQRAPEF 110
>URE2_CANMA (Q8NJR0) Protein URE2| Length = 328 Score = 29.3 bits (64), Expect = 5.0 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = +1 Query: 100 PRSYYLRALLKEFKFTPSTVAIDLNSGESRAVEF 201 P + + +L E +T+ +D N+GE RA EF Sbjct: 97 PNGFKVAIILSELNLPFNTIFLDFNNGEQRAPEF 130
>NRCAM_MOUSE (Q810U4) Neuronal cell adhesion molecule precursor (Nr-CAM)| (NgCAM-related cell adhesion molecule) (Ng-CAM-related) (mBravo) Length = 1256 Score = 28.9 bits (63), Expect = 6.6 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%) Frame = +1 Query: 310 EEATTDSLGRFRLRGLIPGSSYSIRVVAKDNPRLAAVE---RASPESVSVDVD 459 +E S F L+GL+PG++Y +RV A+ + + E P S VD Sbjct: 1063 KEIVNGSRSFFGLKGLMPGTAYKVRVGAEGDSGFVSSEDVFETGPAMASRQVD 1115
>CILP2_HUMAN (Q8IUL8) Cartilage intermediate layer protein 2 precursor (CILP-2)| [Contains: Cartilage intermediate layer protein 2 C1; Cartilage intermediate layer protein 2 C2] Length = 1156 Score = 28.9 bits (63), Expect = 6.6 Identities = 19/52 (36%), Positives = 27/52 (51%) Frame = +1 Query: 229 MGSVTLLTGQPKEGVFVEARSESRGYYEEATTDSLGRFRLRGLIPGSSYSIR 384 +GSV +GQP G V R + AT+D+ G FR+ G+ S +IR Sbjct: 212 LGSVVTPSGQPLLGARVSLRDQPGTV---ATSDAHGTFRVPGVCADSRANIR 260
>PTPRD_HUMAN (P23468) Receptor-type tyrosine-protein phosphatase delta precursor| (EC 3.1.3.48) (Protein-tyrosine phosphatase delta) (R-PTP-delta) Length = 1912 Score = 28.5 bits (62), Expect = 8.6 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 8/62 (12%) Frame = +1 Query: 295 SRGYYEEATTDSLGRFRLRGLIPGSSYSIRVVAKDN--------PRLAAVERASPESVSV 450 S Y+E + R+ + GL P S Y RVVA +N P L +P S Sbjct: 363 SEELYKEIDGVATTRYSVAGLSPYSDYEFRVVAVNNIGRGPPSEPVLTQTSEQAPSSAPR 422 Query: 451 DV 456 DV Sbjct: 423 DV 424
>CHS2_YEAST (P14180) Chitin synthase 2 (EC 2.4.1.16) (Chitin-UDP| acetyl-glucosaminyl transferase 2) Length = 963 Score = 28.5 bits (62), Expect = 8.6 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%) Frame = +3 Query: 198 VPCNPCCLQCHGFCNT--VNWPTKG 266 +P C LQ FCNT V+W TKG Sbjct: 783 LPAFTCTLQIFAFCNTHDVSWGTKG 807
>CHS2_NEUCR (P30589) Chitin synthase 2 (EC 2.4.1.16) (Chitin-UDP| acetyl-glucosaminyl transferase 2) Length = 944 Score = 28.5 bits (62), Expect = 8.6 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%) Frame = +3 Query: 198 VPCNPCCLQCHGFCNT--VNWPTKG 266 +P C LQ + FCNT V W TKG Sbjct: 749 LPSYICTLQIYAFCNTHDVTWGTKG 773
>CHS1_EXODE (P30600) Chitin synthase 1 (EC 2.4.1.16) (Chitin-UDP| acetyl-glucosaminyl transferase 1) (Class-II chitin synthase 1) Length = 988 Score = 28.5 bits (62), Expect = 8.6 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%) Frame = +3 Query: 198 VPCNPCCLQCHGFCNT--VNWPTKG 266 +P C LQ + FCNT V W TKG Sbjct: 771 LPSYICTLQVYAFCNTHDVTWGTKG 795 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.134 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,361,811 Number of Sequences: 219361 Number of extensions: 861456 Number of successful extensions: 2515 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2398 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2508 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
