>HPRK_LACDE (Q93FD2) HPr kinase/phosphorylase (EC 2.7.11.-) (EC 2.7.4.-)|
           (HPrK/P) (HPr(Ser) kinase/phosphorylase)
          Length = 316

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 141 VFQQAG*KQCQCLLSIRCLSLPVNKKEISRHGGTPKL 251
           VF++   K+  CLL  R L +PV  KE +   GTP L
Sbjct: 77  VFEKICQKETPCLLVSRNLPVPVELKEAAEAAGTPIL 113

>TAP1_HUMAN (Q03518) Antigen peptide transporter 1 (APT1) (Peptide transporter|
           TAP1) (ATP-binding cassette sub-family B member 2)
           (Peptide transporter PSF1) (Peptide supply factor 1)
           (PSF-1) (Peptide transporter involved in antigen
           processing 1)
          Length = 748

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 18/56 (32%), Positives = 21/56 (37%)
 Frame = -2

Query: 381 SHPPYLTLIVPKKMAADRLWHPVDGAWVAGEHDKRSNSVRPNYGAWVSLHAVRSLF 214
           SHP    +     + A  LWH +   WV G      N VR   G   S     SLF
Sbjct: 135 SHPTAFVVSYAAALPAAALWHKLGSLWVPGGQGGSGNPVRRLLGCLGSETRRLSLF 190

>TAP1_GORGO (Q28433) Antigen peptide transporter 1 (APT1) (Peptide transporter|
           TAP1) (ATP-binding cassette sub-family B member 2)
          Length = 748

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 18/56 (32%), Positives = 21/56 (37%)
 Frame = -2

Query: 381 SHPPYLTLIVPKKMAADRLWHPVDGAWVAGEHDKRSNSVRPNYGAWVSLHAVRSLF 214
           SHP    +     + A  LWH +   WV G      N VR   G   S     SLF
Sbjct: 135 SHPSAFVVSYAAALPAAALWHKLGSLWVPGGQGGSGNPVRRLLGCLGSETRRLSLF 190

>BET4_YEAST (Q00618) Geranylgeranyl transferase type-2 alpha subunit (EC|
           2.5.1.60) (Geranylgeranyl transferase type II alpha
           subunit) (Type II protein geranyl-geranyltransferase
           alpha subunit) (GGTase-II-alpha) (PGGT) (YPT1/SEC4
           proteins geranylgeranyltra
          Length = 327

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 167 LFLACLLEDTSKPYMTWSLAWPVWVVRLLPTSLASIWR 54
           +F+  LL+D  K Y  W+    +WV++  PTS   +W+
Sbjct: 90  VFVMMLLKDYPKVYWIWNHR--LWVLKHYPTSSPKVWQ 125

>RYK2_DROME (Q9V422) Tyrosine-protein kinase Dnt precursor (EC 2.7.10.1)|
           (Protein doughnut)
          Length = 584

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 19/73 (26%), Positives = 32/73 (43%)
 Frame = +3

Query: 168 CQCLLSIRCLSLPVNKKEISRHGGTPKLHNSVARSCSVCHARRPPKLHLLGAIAGLLPSS 347
           C  L+   C+    NK++  +HGG P   +S  R  +      PP    +G+ A + PS 
Sbjct: 224 CLLLMIAYCVKGAANKRQHHQHGGQPMRTSSFQRLNT-----HPPCQSSMGSAAYMTPSI 278

Query: 348 *VQLMSSKVGEKI 386
              +  S +  K+
Sbjct: 279 IAPIHGSSLPRKV 291


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,337,872
Number of Sequences: 219361
Number of extensions: 1576001
Number of successful extensions: 3807
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3806
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)