ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags6c20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ234627.1|HVU234627 Hordeum vulgare genomic DNA fragment; c... 62 2e-06
2gb|AC121301.8| Mus musculus chromosome 7, clone RP23-432H1, comp... 46 0.13
3gb|AC171404.5| Mus musculus chromosome 7, clone RP24-235N21, com... 46 0.13
4emb|AL671501.8| Mouse DNA sequence from clone RP23-313P3 on chro... 44 0.51
5emb|AL831765.3| Mouse DNA sequence from clone RP23-148O12 on chr... 44 0.51
6gb|AC103745.2| Homo sapiens chromosome 15, clone RP11-249A12, co... 42 2.0
7gb|AC087485.6| Homo sapiens chromosome 15, clone RP11-570N16, co... 42 2.0
8gb|DP000062.1| Sus scrofa target 117 genomic scaffold 42 2.0
9gb|AC136896.6| Homo sapiens chromosome 15, clone RP11-860O1, com... 42 2.0
10gb|AC135350.6| Homo sapiens chromosome 15, clone RP13-946E15, co... 42 2.0
11emb|CT573092.3| CH250-12B7, complete sequence 42 2.0
12emb|AL731554.13| Mouse DNA sequence from clone RP23-337H1 on chr... 42 2.0
13ref|NM_028527.1| Mus musculus RIKEN cDNA 1700047I17 gene (170004... 40 8.0
14gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 40 8.0
15ref|XM_586057.2| PREDICTED: Bos taurus similar to olfactory rece... 40 8.0
16gb|AF016413.2| Caenorhabditis elegans cosmid F27E11, complete se... 40 8.0
17gb|AC091807.4| Homo sapiens chromosome X clone RP6-186E3 map p11... 40 8.0
18ref|XM_976355.1| PREDICTED: Mus musculus similar to signal recog... 40 8.0
19ref|XM_976391.1| PREDICTED: Mus musculus similar to signal recog... 40 8.0
20gb|BC049669.1| Mus musculus RIKEN cDNA 1700047I17 gene, mRNA (cD... 40 8.0
21gb|BC005543.1| Mus musculus signal recognition particle 54, mRNA... 40 8.0
22gb|BC037231.1| Homo sapiens chromosome 17 open reading frame 56,... 40 8.0
23gb|BC042155.1| Homo sapiens chromosome 17 open reading frame 56,... 40 8.0
24emb|AL117381.32|HSJ857M17 Human DNA sequence from clone RP5-857M... 40 8.0
25emb|AL133546.4| Human DNA sequence from clone RP1-29A6 on chromo... 40 8.0
26gb|AC171497.3| Pan troglodytes chromosome X clone PTB-121G07 map... 40 8.0
27dbj|AK128728.1| Homo sapiens cDNA FLJ46895 fis, clone UTERU3020090 40 8.0
28dbj|AK127221.1| Homo sapiens cDNA FLJ45288 fis, clone BRHIP3002141 40 8.0
29dbj|AK056090.1| Homo sapiens cDNA FLJ31528 fis, clone NT2RI2000412 40 8.0
30emb|CR594729.1| full-length cDNA clone CS0DH004YJ08 of T cells (... 40 8.0
31gb|AC104376.6| Homo sapiens chromosome 8, clone CTD-2242O8, comp... 40 8.0
32gb|AC087312.8| Homo sapiens 12p BAC RP11-615I16 (Roswell Park Ca... 40 8.0
33gb|AC092621.2| Homo sapiens BAC clone RP11-240A2 from 4, complet... 40 8.0
34gb|AC069362.12| Homo sapiens, clone RP11-745J24, complete sequence 40 8.0
35dbj|AK159923.1| Mus musculus osteoclast-like cell cDNA, RIKEN fu... 40 8.0
36gb|AF179497.1|AF179496S2 Prunus mume 5.8S ribosomal RNA, partial... 40 8.0
37dbj|AB169196.1| Macaca fascicularis testis cDNA, clone: QtsA-179... 40 8.0
38dbj|AK006713.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 8.0
39gb|AC157515.2| Mus musculus BAC clone RP24-226N22 from chromosom... 40 8.0
40dbj|AK045530.1| Mus musculus adult male corpora quadrigemina cDN... 40 8.0
41dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
42gb|AC023842.5|AC023842 Homo sapiens chromosome 8, clone RP11-374... 40 8.0
43gb|AC027601.25| Homo sapiens chromosome 17, clone RP11-455O6, co... 40 8.0
44ref|XM_576030.1| PREDICTED: Rattus norvegicus similar to RIKEN c... 40 8.0
45dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 8.0
46dbj|AP003685.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
47ref|XM_306600.2| Anopheles gambiae str. PEST ENSANGP00000001341 ... 40 8.0
48gb|BC048158.1| Mus musculus RIKEN cDNA 1700047I17 gene, mRNA (cD... 40 8.0
49emb|CT573438.2| Pan troglodytes chromosome X clone RP43-057M01 m... 40 8.0
50gb|BC064483.1| Homo sapiens chromosome 17 open reading frame 56,... 40 8.0
51gb|AC174776.3| Mus musculus BAC clone RP23-349J24 from chromosom... 40 8.0
52gb|AC166323.5| Mus musculus BAC clone RP24-491I24 from chromosom... 40 8.0
53ref|NM_144679.1| Homo sapiens chromosome 17 open reading frame 5... 40 8.0
54gb|AC159636.3| Mus musculus BAC clone RP24-93H15 from chromosome... 40 8.0
55emb|BX072536.4| Mouse DNA sequence from clone RP23-5A21 on chrom... 40 8.0
56gb|AC153524.3| Mus musculus 10 BAC RP23-349H12 (Roswell Park Can... 40 8.0
57gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 40 8.0
58emb|AL832593.1|HSM803902 Homo sapiens mRNA; cDNA DKFZp451M1616 (... 40 8.0 
>emb|AJ234627.1|HVU234627 Hordeum vulgare genomic DNA fragment; clone MWG0892.rev
          Length = 512

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 62/71 (87%), Gaps = 1/71 (1%)
 Strand = Plus / Minus

                                                                       
Query: 335 acgaggtccagatccacatggataacatctacagagaggtgacgaatttgctgcagatga 394
           ||||||||||||||||||| |||||||| ||||| ||||||| || |||||| || | ||
Sbjct: 512 acgaggtccagatccacat-gataacatgtacagcgaggtgaagagtttgctccaaagga 454

                      
Query: 395 tggagaaagtg 405
           |||| ||||||
Sbjct: 453 tggataaagtg 443



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                  
Query: 533 gattgaatgcaatcttcaacgggttgaatcagctttgcacccagttggatcagat 587
           ||||||||| ||||||||  ||| || || |||| ||||||||||||||||||||
Sbjct: 417 gattgaatggaatcttcagtgggctggatgagctctgcacccagttggatcagat 363
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>gb|AC121301.8| Mus musculus chromosome 7, clone RP23-432H1, complete sequence
          Length = 205639

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 346    atccacatggataacatctacag 368
              |||||||||||||||||||||||
Sbjct: 152827 atccacatggataacatctacag 152805
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>gb|AC171404.5| Mus musculus chromosome 7, clone RP24-235N21, complete sequence
          Length = 146054

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 346    atccacatggataacatctacag 368
              |||||||||||||||||||||||
Sbjct: 135969 atccacatggataacatctacag 135991
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>emb|AL671501.8| Mouse DNA sequence from clone RP23-313P3 on chromosome X, complete
              sequence
          Length = 142525

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 529    tacagattgaatgcaatcttca 550
              ||||||||||||||||||||||
Sbjct: 139553 tacagattgaatgcaatcttca 139532
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>emb|AL831765.3| Mouse DNA sequence from clone RP23-148O12 on chromosome 4, complete
              sequence
          Length = 194457

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 529    tacagattgaatgcaatcttca 550
              ||||||||||||||||||||||
Sbjct: 191485 tacagattgaatgcaatcttca 191464
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>gb|AC103745.2| Homo sapiens chromosome 15, clone RP11-249A12, complete sequence
          Length = 82642

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 134   ctgacacaaaattggagatggggga 158
             |||||| ||||||||||||||||||
Sbjct: 59845 ctgacagaaaattggagatggggga 59821
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>gb|AC087485.6| Homo sapiens chromosome 15, clone RP11-570N16, complete sequence
          Length = 169771

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 134  ctgacacaaaattggagatggggga 158
            |||||| ||||||||||||||||||
Sbjct: 2009 ctgacagaaaattggagatggggga 1985
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>gb|DP000062.1| Sus scrofa target 117 genomic scaffold
          Length = 605739

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 211    gaggggacaacatcggagact 231
              |||||||||||||||||||||
Sbjct: 426787 gaggggacaacatcggagact 426807
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>gb|AC136896.6| Homo sapiens chromosome 15, clone RP11-860O1, complete sequence
          Length = 214946

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 134   ctgacacaaaattggagatggggga 158
             |||||| ||||||||||||||||||
Sbjct: 21386 ctgacagaaaattggagatggggga 21362
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>gb|AC135350.6| Homo sapiens chromosome 15, clone RP13-946E15, complete sequence
          Length = 158316

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 134    ctgacacaaaattggagatggggga 158
              |||||| ||||||||||||||||||
Sbjct: 109563 ctgacagaaaattggagatggggga 109587
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>emb|CT573092.3| CH250-12B7, complete sequence
          Length = 144364

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 528    atacagattgaatgcaatctt 548
              |||||||||||||||||||||
Sbjct: 110968 atacagattgaatgcaatctt 110948
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>emb|AL731554.13| Mouse DNA sequence from clone RP23-337H1 on chromosome 5, complete
              sequence
          Length = 159200

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 45     ccagcagcaggaagcaacagg 65
              |||||||||||||||||||||
Sbjct: 152107 ccagcagcaggaagcaacagg 152127
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>ref|NM_028527.1| Mus musculus RIKEN cDNA 1700047I17 gene (1700047I17Rik), mRNA
          Length = 3863

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 276 caatcttatctccaagaaagtcac 299
           ||||||| ||||||||||||||||
Sbjct: 463 caatcttctctccaagaaagtcac 440
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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 538    aatgcaatcttcaacgggtt 557
              ||||||||||||||||||||
Sbjct: 964823 aatgcaatcttcaacgggtt 964842
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>ref|XM_586057.2| PREDICTED: Bos taurus similar to olfactory receptor Olr1684
            (LOC509155), partial mRNA
          Length = 1773

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 276  caatcttatctccaagaaagtcac 299
            ||||||| ||||||||||||||||
Sbjct: 1017 caatcttctctccaagaaagtcac 994
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>gb|AF016413.2| Caenorhabditis elegans cosmid F27E11, complete sequence
          Length = 25750

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 386   tgcagatgatggagaaagtg 405
             ||||||||||||||||||||
Sbjct: 22631 tgcagatgatggagaaagtg 22650
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>gb|AC091807.4| Homo sapiens chromosome X clone RP6-186E3 map p11.4, complete
            sequence
          Length = 172150

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 387  gcagatgatggagaaagtgcagaacagc 414
            |||||| ||||||||| |||||||||||
Sbjct: 6629 gcagataatggagaaactgcagaacagc 6602
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>ref|XM_976355.1| PREDICTED: Mus musculus similar to signal recognition particle 54,
           transcript variant 2 (LOC665155), mRNA
          Length = 5301

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 276 caatcttatctccaagaaagtcac 299
           ||||||| ||||||||||||||||
Sbjct: 522 caatcttctctccaagaaagtcac 499
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>ref|XM_976391.1| PREDICTED: Mus musculus similar to signal recognition particle 54,
            transcript variant 3 (LOC665155), mRNA
          Length = 6782

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 276  caatcttatctccaagaaagtcac 299
            ||||||| ||||||||||||||||
Sbjct: 2003 caatcttctctccaagaaagtcac 1980
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>gb|BC049669.1| Mus musculus RIKEN cDNA 1700047I17 gene, mRNA (cDNA clone MGC:58495
           IMAGE:6535412), complete cds
          Length = 861

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 276 caatcttatctccaagaaagtcac 299
           ||||||| ||||||||||||||||
Sbjct: 522 caatcttctctccaagaaagtcac 499
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>gb|BC005543.1| Mus musculus signal recognition particle 54, mRNA (cDNA clone
            MGC:6231 IMAGE:3585216), complete cds
          Length = 1986

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 276  caatcttatctccaagaaagtcac 299
            ||||||| ||||||||||||||||
Sbjct: 1666 caatcttctctccaagaaagtcac 1643
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>gb|BC037231.1| Homo sapiens chromosome 17 open reading frame 56, mRNA (cDNA clone
           IMAGE:5197074), with apparent retained intron
          Length = 1465

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 147 ggagatgggggaaactgagg 166
           ||||||||||||||||||||
Sbjct: 930 ggagatgggggaaactgagg 911
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>gb|BC042155.1| Homo sapiens chromosome 17 open reading frame 56, mRNA (cDNA clone
            IMAGE:4541965), with apparent retained intron
          Length = 2568

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 147  ggagatgggggaaactgagg 166
            ||||||||||||||||||||
Sbjct: 2050 ggagatgggggaaactgagg 2031
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>emb|AL117381.32|HSJ857M17 Human DNA sequence from clone RP5-857M17 on chromosome 20 Contains the
             3' end of the ID1 gene for inhibitor of DNA binding 1
             (dominant negative helix-loop-helix protein), the COX4I2
             gene for cytochrome c oxidase subunit IV variant 2, the 5'
             end of a novel gene, the 3' end of the BCL2L1 gene for
             BCL2-like 1 and two CpG islands, complete sequence
          Length = 99593

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 147   ggagatgggggaaactgagg 166
             ||||||||||||||||||||
Sbjct: 27912 ggagatgggggaaactgagg 27931
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>emb|AL133546.4| Human DNA sequence from clone RP1-29A6 on chromosome Xq26.2-27.3,
             complete sequence
          Length = 113988

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 528   atacagattgaatgcaatct 547
             ||||||||||||||||||||
Sbjct: 27237 atacagattgaatgcaatct 27256
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>gb|AC171497.3| Pan troglodytes chromosome X clone PTB-121G07 map human ortholog p11.4,
             complete sequence
          Length = 227065

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 387   gcagatgatggagaaagtgcagaacagc 414
             |||||| ||||||||| |||||||||||
Sbjct: 49709 gcagataatggagaaactgcagaacagc 49682
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>dbj|AK128728.1| Homo sapiens cDNA FLJ46895 fis, clone UTERU3020090
          Length = 3802

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 147  ggagatgggggaaactgagg 166
            ||||||||||||||||||||
Sbjct: 3302 ggagatgggggaaactgagg 3283
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>dbj|AK127221.1| Homo sapiens cDNA FLJ45288 fis, clone BRHIP3002141
          Length = 3642

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 147  ggagatgggggaaactgagg 166
            ||||||||||||||||||||
Sbjct: 3142 ggagatgggggaaactgagg 3123
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>dbj|AK056090.1| Homo sapiens cDNA FLJ31528 fis, clone NT2RI2000412
          Length = 2249

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 147  ggagatgggggaaactgagg 166
            ||||||||||||||||||||
Sbjct: 1749 ggagatgggggaaactgagg 1730
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>emb|CR594729.1| full-length cDNA clone CS0DH004YJ08 of T cells (Jurkat cell line)
           of Homo sapiens (human)
          Length = 1072

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 147 ggagatgggggaaactgagg 166
           ||||||||||||||||||||
Sbjct: 624 ggagatgggggaaactgagg 605
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>gb|AC104376.6| Homo sapiens chromosome 8, clone CTD-2242O8, complete sequence
          Length = 203348

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 528   atacagattgaatgcaatct 547
             ||||||||||||||||||||
Sbjct: 37998 atacagattgaatgcaatct 37979
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>gb|AC087312.8| Homo sapiens 12p BAC RP11-615I16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 148543

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 529   tacagattgaatgcaatctt 548
             ||||||||||||||||||||
Sbjct: 49363 tacagattgaatgcaatctt 49344
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>gb|AC092621.2| Homo sapiens BAC clone RP11-240A2 from 4, complete sequence
          Length = 141742

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 358    aacatctacagagaggtgac 377
              ||||||||||||||||||||
Sbjct: 127486 aacatctacagagaggtgac 127505
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>gb|AC069362.12| Homo sapiens, clone RP11-745J24, complete sequence
          Length = 176295

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 387    gcagatgatggagaaagtgcagaacagc 414
              |||||| ||||||||| |||||||||||
Sbjct: 158084 gcagataatggagaaactgcagaacagc 158111
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>dbj|AK159923.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched
           library, clone:I420037O17 product:hypothetical
           Acylphosphatase containing protein, full insert sequence
          Length = 1389

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 276 caatcttatctccaagaaagtcac 299
           ||||||| ||||||||||||||||
Sbjct: 501 caatcttctctccaagaaagtcac 478
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>gb|AF179497.1|AF179496S2 Prunus mume 5.8S ribosomal RNA, partial sequence and internal
           transcribed spacer 2, complete sequence
          Length = 306

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 305 tgaaagccgagccgaagccg 324
           ||||||||||||||||||||
Sbjct: 255 tgaaagccgagccgaagccg 236
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>dbj|AB169196.1| Macaca fascicularis testis cDNA, clone: QtsA-17929, similar to human
            hypothetical protein FLJ31528 (FLJ31528), mRNA, RefSeq:
            NM_144679.1
          Length = 2236

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 147  ggagatgggggaaactgagg 166
            ||||||||||||||||||||
Sbjct: 1720 ggagatgggggaaactgagg 1701
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>dbj|AK006713.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:1700047I17 product:hypothetical protein,
           full insert sequence
          Length = 1183

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 276 caatcttatctccaagaaagtcac 299
           ||||||| ||||||||||||||||
Sbjct: 296 caatcttctctccaagaaagtcac 273
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>gb|AC157515.2| Mus musculus BAC clone RP24-226N22 from chromosome 12, complete sequence
          Length = 143190

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 276    caatcttatctccaagaaagtcac 299
              ||||||| ||||||||||||||||
Sbjct: 127801 caatcttctctccaagaaagtcac 127778
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>dbj|AK045530.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN
           full-length enriched library, clone:B230209B06
           product:hypothetical protein, full insert sequence
          Length = 2962

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 276 caatcttatctccaagaaagtcac 299
           ||||||| ||||||||||||||||
Sbjct: 523 caatcttctctccaagaaagtcac 500
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 309      agccgagccgaagccgagga 328
                ||||||||||||||||||||
Sbjct: 30332427 agccgagccgaagccgagga 30332446
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>gb|AC023842.5|AC023842 Homo sapiens chromosome 8, clone RP11-374M4, complete sequence
          Length = 187351

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 528   atacagattgaatgcaatct 547
             ||||||||||||||||||||
Sbjct: 46056 atacagattgaatgcaatct 46075
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>gb|AC027601.25| Homo sapiens chromosome 17, clone RP11-455O6, complete sequence
          Length = 192732

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 147   ggagatgggggaaactgagg 166
             ||||||||||||||||||||
Sbjct: 76149 ggagatgggggaaactgagg 76168
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>ref|XM_576030.1| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700047I17
           (LOC500652), mRNA
          Length = 799

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 276 caatcttatctccaagaaagtcac 299
           ||||||| ||||||||||||||||
Sbjct: 487 caatcttctctccaagaaagtcac 464
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 332     gcgacgaggtccagatccac 351
               ||||||||||||||||||||
Sbjct: 2372555 gcgacgaggtccagatccac 2372536
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>dbj|AP003685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0548E04
          Length = 138037

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 309   agccgagccgaagccgagga 328
             ||||||||||||||||||||
Sbjct: 79022 agccgagccgaagccgagga 79041
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>ref|XM_306600.2| Anopheles gambiae str. PEST ENSANGP00000001341
           (ENSANGG00000001147), partial mRNA
          Length = 1089

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 387 gcagatgatggagaaagtgc 406
           ||||||||||||||||||||
Sbjct: 819 gcagatgatggagaaagtgc 838
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>gb|BC048158.1| Mus musculus RIKEN cDNA 1700047I17 gene, mRNA (cDNA clone MGC:61221
           IMAGE:5698044), complete cds
          Length = 3863

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 276 caatcttatctccaagaaagtcac 299
           ||||||| ||||||||||||||||
Sbjct: 463 caatcttctctccaagaaagtcac 440
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>emb|CT573438.2| Pan troglodytes chromosome X clone RP43-057M01 map Xq28, complete
             sequence
          Length = 162109

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 528   atacagattgaatgcaatct 547
             ||||||||||||||||||||
Sbjct: 92051 atacagattgaatgcaatct 92032
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>gb|BC064483.1| Homo sapiens chromosome 17 open reading frame 56, mRNA (cDNA clone
            MGC:71154 IMAGE:5430837), complete cds
          Length = 2264

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 147  ggagatgggggaaactgagg 166
            ||||||||||||||||||||
Sbjct: 1746 ggagatgggggaaactgagg 1727
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>gb|AC174776.3| Mus musculus BAC clone RP23-349J24 from chromosome 12, complete sequence
          Length = 195214

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 276    caatcttatctccaagaaagtcac 299
              ||||||| ||||||||||||||||
Sbjct: 140447 caatcttctctccaagaaagtcac 140424



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 276   caatcttatctccaagaaagtcac 299
             ||||||| ||||||||||||||||
Sbjct: 65383 caatcttctctccaagaaagtcac 65360
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>gb|AC166323.5| Mus musculus BAC clone RP24-491I24 from chromosome 12, complete sequence
          Length = 143321

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 276    caatcttatctccaagaaagtcac 299
              ||||||| ||||||||||||||||
Sbjct: 115409 caatcttctctccaagaaagtcac 115386



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 276   caatcttatctccaagaaagtcac 299
             ||||||| ||||||||||||||||
Sbjct: 50741 caatcttctctccaagaaagtcac 50718
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>ref|NM_144679.1| Homo sapiens chromosome 17 open reading frame 56 (C17orf56), mRNA
          Length = 2249

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 147  ggagatgggggaaactgagg 166
            ||||||||||||||||||||
Sbjct: 1749 ggagatgggggaaactgagg 1730
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>gb|AC159636.3| Mus musculus BAC clone RP24-93H15 from chromosome 12, complete sequence
          Length = 184821

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 276    caatcttatctccaagaaagtcac 299
              ||||||| ||||||||||||||||
Sbjct: 175644 caatcttctctccaagaaagtcac 175667
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>emb|BX072536.4| Mouse DNA sequence from clone RP23-5A21 on chromosome X, complete
              sequence
          Length = 246587

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 527    aatacagattgaatgcaatc 546
              ||||||||||||||||||||
Sbjct: 137396 aatacagattgaatgcaatc 137377
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>gb|AC153524.3| Mus musculus 10 BAC RP23-349H12 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 167574

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   actgaggggatgaaggagaa 179
             ||||||||||||||||||||
Sbjct: 38032 actgaggggatgaaggagaa 38051
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>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 407     agaacagcgagattccgggc 426
               ||||||||||||||||||||
Sbjct: 2237513 agaacagcgagattccgggc 2237532
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>emb|AL832593.1|HSM803902 Homo sapiens mRNA; cDNA DKFZp451M1616 (from clone DKFZp451M1616)
          Length = 4505

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 147 ggagatgggggaaactgagg 166
           ||||||||||||||||||||
Sbjct: 73  ggagatgggggaaactgagg 92


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,502,461
Number of Sequences: 3902068
Number of extensions: 4502461
Number of successful extensions: 87808
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87656
Number of HSP's gapped (non-prelim): 152
length of query: 587
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 564
effective length of database: 17,143,297,704
effective search space: 9668819905056
effective search space used: 9668819905056
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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